Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001482

Physical Location & Seq

Genomic Coordinates Forward (+)

38965836 .. 38970045

Gene Structure 4210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00358850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGATTGTTCCCATTGGCCACAGAAGTAGCACTACTCTTGGTTCTGCTCCCACAGTTCAGCTTCTTCACATTTGTTCATGGAGAAATTCCAACCACACTTGATGGGCCCTTCAATCCTGTCACCGTCCCAGTTGACACAAGCTTTCGAGGCAATGCCGTTGACTTGCCAGACTCTGATCCTCGACTTCGAAGAATCGTCAAAGGGTTCGAGCCTGAACAAATCTCTGTCTCCCTCTCTGCAACCCATGACTCTGTTTGGATATCTTGGATCACAGGGGAATTTCAAATTGGGGATGACATAACGCCATTGGATCCGGACTCTGTTGCAAGTGTTGTTGTATATGGAAGGTATGAATATCCCATGACTAATCAATCGACGGGGTATTCTCTGGTTTACAATCAGCTTTATGAGCTTGAAGGCCTTCAAAACTACACTTCTGGAATTATACATCATGTTTGTCTCACAGGTCTGATGCCCAACACCCTGTATCAGTATCAATGTGGAGATCCTTCTATTCCAGCAATGAGCGATGTTTCTTATTTCCAGACTATGCCAGTATCTGGGCCCGAGAGTTATCCTAGTAGAATAGGTGTGGTGGGGGACCTAGGTCTTACATATAACACCACCTCAACAGTTGATCATTTGTTGATCAACCATCCTGATCTTCTTTTATTGGTGGGGGATGTAAGTGATGCTAACCTGTATTTTACAAATGGAACTGCAGATCATTGCTTTCATGAGCAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTACATGCAGCCTCTAGTGTCCAAAGTTCCAGTAATGGTAGTAGAAGGGGACCATGAGATTGAGAAACAGGCTGGAAATCAAATGTTTGCTGCTTACAGTTCCCGATTTGCATTCCCCTCGGAAGAGAGTGGATCATCATCTTCGTTATTCTATTCTTTCAATGCAGGGGGATACACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009846 GO:0009856 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0044237 GO:0044706 GO:0048856 GO:0051704 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

320

Amino Acids

35.51

Weight (kDa)

4.4

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	72 - 184	4e-14	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	196 - 293	8.4e-08	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07130 AT3G07130
fragaria_vesca	FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520
malus_domestica	MD04G1009700.v1.1 MD04G1009800.v1.1 MD05G1174000.v1.1 MD10G1161900.v1.1
prunus_persica	Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.8G201400_v2.0.a1
pyrus_communis	pycom04g00750 pycom04g00760 pycom05g16070 pycom10g13990
rosa_chinensis	RchiOBHm_Chr4g0415071 RchiOBHm_Chr6g0284551
rosa_laevigata	RLG00000008098 RLG00000012739
rosa_multiflora	Rmu_co8519847.1_g000001 Rmu_sc0001246.1_g000001 Rmu_sc0005257.1_g000004 Rmu_sc0042686.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358850
rosa_rugosa	Rorug04G0132200 Rorug04G0132300 Rorug06G0164100
rosa_samantha	Rh4AG191700 Rh4BG189600 Rh4CG202400 Rh4DG190000 Rh6AG277300 Rh6BG277200 Rh6CG279400 Rh6DG271800
rosa_wichuraiana	Rw4G016280 Rw6G023810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccIII	TCCGGA	1 cut(s)	316
AclWI	GGATC	6 cut(s)	173, 278, 308, 321, 503, 919
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	87, 281
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	115, 287, 419, 428, 940
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	4 cut(s)	63, 144, 406, 415
AluI	AGCT	4 cut(s)	63, 144, 406, 415
Alw26I	GTCTC	2 cut(s)	235, 467
AlwI	GGATC	6 cut(s)	173, 278, 308, 321, 503, 919
AlwNI	CAGNNNCTG	2 cut(s)	176, 563
Ama87I	CYCGRG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	4 cut(s)	18, 107, 421, 566
ApaI	GGGCCC	2 cut(s)	111, 570
ApeKI	GCWGC	2 cut(s)	787, 869
ApoI	RAATTY	2 cut(s)	87, 281
Asp700I	GAANNNNTTC	1 cut(s)	423
AspA2I	CCTAGG	1 cut(s)	607
AspS9I	GGNCC	6 cut(s)	107, 108, 566, 567, 604, 829
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	604, 829
AvrII	CCTAGG	1 cut(s)	607
BaeGI	GKGCMC	2 cut(s)	111, 570
BalI	TGGCCA	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	111, 570
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BbvI	GCAGC	2 cut(s)	799, 856
BccI	CCATC	2 cut(s)	98, 666
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	879, 913
BciVI	GTATCC	1 cut(s)	944
BclI	TGATCA	2 cut(s)	640, 651
BcoDI	GTCTC	2 cut(s)	235, 467
BfaI	CTAG	3 cut(s)	582, 608, 794
BfmI	CTRYAG	1 cut(s)	723
BfuI	GTATCC	1 cut(s)	944
BisI	GCNGC	2 cut(s)	788, 870
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	2 cut(s)	789, 871
Bme18I	GGWCC	2 cut(s)	604, 829
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	6 cut(s)	107, 108, 566, 567, 604, 829
BmiI	GGNNCC	5 cut(s)	109, 315, 568, 605, 830
BmrI	ACTGGG	2 cut(s)	125, 781
BmsI	GCATC	2 cut(s)	465, 685
BmuI	ACTGGG	2 cut(s)	125, 781
BoxI	GACNNNNGTC	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	916
BsaJI	CCNNGG	2 cut(s)	607, 897
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	4 cut(s)	131, 557, 776, 809
Bse3DI	GCAATG	3 cut(s)	160, 531, 730
Bse8I	GATNNNNATC	1 cut(s)	916
BseAI	TCCGGA	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	607, 897
BseGI	GGATG	3 cut(s)	301, 658, 691
BseJI	GATNNNNATC	1 cut(s)	916
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMI	GCAATG	3 cut(s)	160, 531, 730
BseNI	ACTGG	4 cut(s)	131, 557, 776, 809
BseSI	GKGCMC	2 cut(s)	111, 570
BseXI	GCAGC	2 cut(s)	799, 856
BshFI	GGCC	4 cut(s)	20, 109, 423, 568
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	3 cut(s)	113, 617, 842
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	235, 467
BsmFI	GGGAC	3 cut(s)	113, 617, 842
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	4 cut(s)	20, 109, 423, 568
BsoBI	CYCGRG	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	190
Bsp120I	GGGCCC	2 cut(s)	107, 566
Bsp1286I	GDGCHC	2 cut(s)	111, 570
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
BspANI	GGCC	4 cut(s)	20, 109, 423, 568
BspEI	TCCGGA	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	5 cut(s)	109, 315, 568, 605, 830
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	6 cut(s)	173, 278, 308, 321, 503, 919
BspT104I	TTCGAA	1 cut(s)	190
BsrDI	GCAATG	3 cut(s)	160, 531, 730
BsrI	ACTGG	4 cut(s)	131, 557, 776, 809
BssECI	CCNNGG	2 cut(s)	607, 897
BssMI	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
BssT1I	CCWWGG	1 cut(s)	607
Bst4CI	ACNGT	4 cut(s)	57, 127, 637, 878
Bst6I	CTCTTC	1 cut(s)	897
BstBI	TTCGAA	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	301, 658, 691
BstKTI	GATC	9 cut(s)	181, 273, 316, 511, 643, 654, 667, 730, 914
BstMAI	GTCTC	2 cut(s)	235, 467
BstMBI	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 412
BstNSI	RCATGY	1 cut(s)	787
BstPAI	GACNNNNGTC	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	2 cut(s)	111, 570
BstV1I	GCAGC	2 cut(s)	799, 856
BstX2I	RGATCY	2 cut(s)	313, 508
BstYI	RGATCY	2 cut(s)	313, 508
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	4 cut(s)	20, 109, 423, 568
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	301, 658, 691
CaiI	CAGNNNCTG	2 cut(s)	176, 563
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	6 cut(s)	107, 108, 566, 567, 604, 829
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	7 cut(s)	80, 248, 364, 455, 740, 784, 833
CviQI	GTAC	1 cut(s)	781
DpnI	GATC	9 cut(s)	180, 272, 315, 510, 642, 653, 666, 729, 913
DpnII	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
Eco130I	CCWWGG	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	111, 570
Eco32I	GATATC	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	604, 829
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	2 cut(s)	108, 604
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	111, 570
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	7 cut(s)	83, 251, 367, 458, 743, 787, 836
FaqI	GGGAC	3 cut(s)	113, 617, 842
FatI	CATG	7 cut(s)	79, 247, 363, 454, 739, 783, 832
FbaI	TGATCA	2 cut(s)	640, 651
Fnu4HI	GCNGC	2 cut(s)	788, 870
FokI	GGATG	3 cut(s)	308, 645, 698
FriOI	GRGCYC	2 cut(s)	111, 570
Fsp4HI	GCNGC	2 cut(s)	788, 870
FspBI	CTAG	3 cut(s)	582, 608, 794
GluI	GCNGC	2 cut(s)	788, 870
HaeIII	GGCC	4 cut(s)	20, 109, 423, 568
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	7 cut(s)	83, 251, 367, 458, 743, 787, 836
HincII	GTYRAC	2 cut(s)	136, 163
HindII	GTYRAC	2 cut(s)	136, 163
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	4 cut(s)	173, 195, 251, 320
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	136, 163, 397
Hpy188I	TCNGA	3 cut(s)	178, 474, 901
Hpy188III	TCNNGA	6 cut(s)	317, 441, 547, 662, 740, 882
Hpy8I	GTNNAC	3 cut(s)	136, 163, 397
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	7 cut(s)	121, 342, 413, 434, 522, 771, 818
HpyCH4III	ACNGT	4 cut(s)	57, 127, 637, 878
HpyCH4V	TGCA	6 cut(s)	242, 329, 725, 787, 890, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 412
Hsp92II	CATG	7 cut(s)	83, 251, 367, 458, 743, 787, 836
Kpn2I	TCCGGA	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	640, 651
Kzo9I	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	2 cut(s)	799, 856
LweI	GCATC	2 cut(s)	465, 685
MaeI	CTAG	3 cut(s)	582, 608, 794
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	9 cut(s)	180, 272, 315, 510, 642, 653, 666, 729, 913
MboI	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
MboII	GAAGA	5 cut(s)	58, 204, 659, 912, 914
MflI	RGATCY	2 cut(s)	313, 508
MhlI	GDGCHC	2 cut(s)	111, 570
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	4 cut(s)	87, 281, 288, 444
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	3 cut(s)	167, 245, 314
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	143, 192, 245, 640, 768, 801, 907
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	890
MwoI	GCNNNNNNNGC	2 cut(s)	150, 412
NdeII	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
NlaIII	CATG	7 cut(s)	83, 251, 367, 458, 743, 787, 836
NlaIV	GGNNCC	5 cut(s)	109, 315, 568, 605, 830
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	787
NspV	TTCGAA	1 cut(s)	190
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	423
PctI	GAATGC	1 cut(s)	890
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	789, 871
PleI	GAGTC	3 cut(s)	167, 245, 314
PpsI	GAGTC	3 cut(s)	167, 245, 314
PpuMI	RGGWCCY	1 cut(s)	604
PshAI	GACNNNNGTC	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	604
PspN4I	GGNNCC	5 cut(s)	109, 315, 568, 605, 830
PspOMI	GGGCCC	2 cut(s)	107, 566
PspPI	GGNCC	6 cut(s)	107, 108, 566, 567, 604, 829
PspPPI	RGGWCCY	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	2 cut(s)	176, 563
PsuI	RGATCY	2 cut(s)	313, 508
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
SatI	GCNGC	2 cut(s)	788, 870
Sau3AI	GATC	9 cut(s)	178, 270, 313, 508, 640, 651, 664, 727, 911
Sau96I	GGNCC	6 cut(s)	107, 108, 566, 567, 604, 829
SchI	GAGTC	3 cut(s)	167, 245, 314
SduI	GDGCHC	2 cut(s)	111, 570
SfaNI	GCATC	2 cut(s)	465, 685
SfcI	CTRYAG	1 cut(s)	723
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	2 cut(s)	604, 829
Sse9I	AATT	4 cut(s)	87, 281, 288, 444
SseBI	AGGCCT	1 cut(s)	423
SspMI	CTAG	3 cut(s)	582, 608, 794
StuI	AGGCCT	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	4 cut(s)	57, 127, 637, 878
TaqI	TCGA	5 cut(s)	148, 184, 190, 210, 377
TasI	AATT	4 cut(s)	87, 281, 288, 444
TfiI	GAWTC	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	787, 869
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	68, 369, 728
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	604, 829
XapI	RAATTY	2 cut(s)	87, 281
XceI	RCATGY	1 cut(s)	787
XmaJI	CCTAGG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	3 cut(s)	582, 608, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.