Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001482

Physical Location & Seq

Genomic Coordinates Forward (+)

32957711 .. 32962556

Gene Structure 4846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG189600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGATTGTTCCCATTGGCCACAGAAGTAGCAGTTCTCTTAGTTCTGCTCCCACAGTTCAGCTTCTTCACATTTGTTCATGGAGAAATTCCAACCACACTTGAGGGGCCCTTCAAGCCTGTCACCGTCCCAGTTGACACAAGCCTTCGAGGCAACGCCGTTGACTTGCCAGACTCTGATCCTCGAGTTAGAAGAATCGTCAAAGGGTTCGAGCCTGAACAAATCTCTGTCTCCCTCTCTGCAACCCATGACTCTGTTTGGATATCTTGGATCACAGGGGAATTTCATATTGGGGATGACATAACGCCATTGGATCCGGACACTGTTGCAAGTGTTGTTGTATATGGAAGGTATGGATATCCCATGACTAATCAATCGACGGGGTATTCTCTGGTTTACAATCAGCTTTATGAGCTTGAAGGCCTTCAAAACTACACTTCTGGAATTATACATCATGTTCGTCTCACAGGTCTGATGCCCAACACCCTGTATCAGTATCAATGTGGAGATCCTTCTATTCCAGCAATGAGTGATGTTTCTTATTTCCAGACTATGCCAGTATCTGGGCCCGAGAGTTATCCTAGCAGAATAGCTGTGGTGGGGGACCTAGGTCTTACATATAACACCACCTCAACAGTTGATCATTTGTTGATCAACCATCCTGATCTTCTTTTATTGGTGGGGGATGTTAGTGATGCTAACCTGTATTTTACAAATGGAACTGCGGATCATTTCTTTCATGAGCAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTACATGCAGCCTCTAGTGTCCAAAGTTCCAGTAATGGTAGTAGAAGGGGACCATGAGATTGAGAAACAGGCTGGAAATCAAATGTTTGCTGCTTACAGTTCCCGATTTGCATTCCCCTCGGAAGAGAGTGGATCATCATCTTCGTTATTCTATTCTTTCAATGCAGGGGGGATACACTTTGTAATGCTTGGTGCCTACACATCTTATGAGAAATCAGGGGACCAGTATAACTGGTTGGAGCTAGATCTGGCTTATGTTGACAGAAATTTGACTCCATGGTTGGTAGCTGCATGGCACCCACCATGGTACAGCACCTACACGGCACATTACAGAGAAGCAGAGTGCATGAGAGTTGAGCTGGAAGACATACTTTATGAGTATGGTGTTGATATCGTCTTCAATGGCCATGTGAGTGTAGTCTATATGGCAATATCATTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009846 GO:0009856 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0044237 GO:0044706 GO:0048856 GO:0051704 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

407

Amino Acids

45.79

Weight (kDa)

4.6

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	72 - 184	9.6e-15	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	196 - 397	9.2e-19	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07130 AT3G07130
fragaria_vesca	FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_2g18800 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520 FvH4_4g16520
malus_domestica	MD04G1009700.v1.1 MD04G1009800.v1.1 MD05G1174000.v1.1 MD10G1161900.v1.1
prunus_persica	Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.1G008900_v2.0.a1 Prupe.8G201400_v2.0.a1
pyrus_communis	pycom04g00750 pycom04g00760 pycom05g16070 pycom10g13990
rosa_chinensis	RchiOBHm_Chr4g0415071 RchiOBHm_Chr6g0284551
rosa_laevigata	RLG00000008098 RLG00000012739
rosa_multiflora	Rmu_co8519847.1_g000001 Rmu_sc0001246.1_g000001 Rmu_sc0005257.1_g000004 Rmu_sc0042686.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358850
rosa_rugosa	Rorug04G0132200 Rorug04G0132300 Rorug06G0164100
rosa_samantha	Rh4AG191700 Rh4BG189600 Rh4CG202400 Rh4DG190000 Rh6AG277300 Rh6BG277200 Rh6CG279400 Rh6DG271800
rosa_wichuraiana	Rw4G016280 Rw6G023810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	971, 1074
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	7 cut(s)	173, 278, 308, 321, 503, 735, 919
AcoI	YGGCCR	2 cut(s)	18, 1183
AcsI	RAATTY	3 cut(s)	87, 281, 1045
AfaI	GTAC	2 cut(s)	782, 1088
AfiI	CCNNNNNNNGG	1 cut(s)	563
AgsI	TTSAA	5 cut(s)	115, 419, 428, 940, 1180
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	7 cut(s)	63, 406, 415, 593, 1021, 1067, 1138
AluI	AGCT	7 cut(s)	63, 406, 415, 593, 1021, 1067, 1138
Alw26I	GTCTC	2 cut(s)	235, 467
AlwI	GGATC	7 cut(s)	173, 278, 308, 321, 503, 735, 919
AlwNI	CAGNNNCTG	2 cut(s)	176, 563
Ama87I	CYCGRG	2 cut(s)	183, 569
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	5 cut(s)	18, 107, 421, 566, 1183
ApaI	GGGCCC	2 cut(s)	111, 570
ApeKI	GCWGC	3 cut(s)	787, 869, 1067
ApoI	RAATTY	3 cut(s)	87, 281, 1045
Asp700I	GAANNNNTTC	1 cut(s)	423
AspA2I	CCTAGG	1 cut(s)	607
AspS9I	GGNCC	7 cut(s)	107, 108, 566, 567, 604, 829, 1000
AsuHPI	GGTGA	1 cut(s)	115
AvaI	CYCGRG	2 cut(s)	183, 569
AvaII	GGWCC	3 cut(s)	604, 829, 1000
AvrII	CCTAGG	1 cut(s)	607
BaeGI	GKGCMC	2 cut(s)	111, 570
BalI	TGGCCA	2 cut(s)	20, 1185
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	2 cut(s)	971, 1074
BanII	GRGCYC	2 cut(s)	111, 570
BbsI	GAAGAC	2 cut(s)	1149, 1168
BbvI	GCAGC	3 cut(s)	799, 856, 1054
BccI	CCATC	1 cut(s)	666
BceAI	ACGGC	2 cut(s)	143, 1116
BcgI	CGANNNNNNTGC	2 cut(s)	879, 913
BciVI	GTATCC	1 cut(s)	945
BclI	TGATCA	2 cut(s)	640, 651
BcoDI	GTCTC	2 cut(s)	235, 467
BfaI	CTAG	4 cut(s)	582, 608, 794, 1022
BfuI	GTATCC	1 cut(s)	945
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	3 cut(s)	788, 870, 1068
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	3 cut(s)	789, 871, 1069
Bme18I	GGWCC	3 cut(s)	604, 829, 1000
BmeT110I	CYCGRG	2 cut(s)	183, 569
BmgT120I	GGNCC	7 cut(s)	107, 108, 566, 567, 604, 829, 1000
BmiI	GGNNCC	9 cut(s)	108, 109, 315, 568, 605, 830, 973, 1001, 1076
BmrI	ACTGGG	2 cut(s)	125, 781
BmsI	GCATC	2 cut(s)	465, 685
BmuI	ACTGGG	2 cut(s)	125, 781
BoxI	GACNNNNGTC	1 cut(s)	609
BpiI	GAAGAC	2 cut(s)	1149, 1168
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	916
BsaJI	CCNNGG	4 cut(s)	607, 897, 1055, 1082
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	6 cut(s)	131, 557, 776, 809, 1003, 1016
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	916
BseAI	TCCGGA	1 cut(s)	316
BseDI	CCNNGG	4 cut(s)	607, 897, 1055, 1082
BseGI	GGATG	3 cut(s)	301, 658, 691
BseJI	GATNNNNATC	1 cut(s)	916
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	6 cut(s)	131, 557, 776, 809, 1003, 1016
BseSI	GKGCMC	2 cut(s)	111, 570
BseXI	GCAGC	3 cut(s)	799, 856, 1054
BshFI	GGCC	5 cut(s)	20, 109, 423, 568, 1185
BshNI	GGYRCC	2 cut(s)	971, 1074
BsiHKCI	CYCGRG	2 cut(s)	183, 569
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	4 cut(s)	113, 617, 842, 1013
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	235, 467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	4 cut(s)	113, 617, 842, 1013
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	5 cut(s)	20, 109, 423, 568, 1185
BsoBI	CYCGRG	2 cut(s)	183, 569
Bsp120I	GGGCCC	2 cut(s)	107, 566
Bsp1286I	GDGCHC	2 cut(s)	111, 570
Bsp13I	TCCGGA	1 cut(s)	316
Bsp19I	CCATGG	2 cut(s)	1055, 1082
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	5 cut(s)	20, 109, 423, 568, 1185
BspEI	TCCGGA	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	9 cut(s)	108, 109, 315, 568, 605, 830, 973, 1001, 1076
BspPI	GGATC	7 cut(s)	173, 278, 308, 321, 503, 735, 919
BspT107I	GGYRCC	2 cut(s)	971, 1074
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	6 cut(s)	131, 557, 776, 809, 1003, 1016
BssECI	CCNNGG	4 cut(s)	607, 897, 1055, 1082
BssT1I	CCWWGG	3 cut(s)	607, 1055, 1082
Bst4CI	ACNGT	5 cut(s)	57, 127, 325, 637, 878
Bst6I	CTCTTC	1 cut(s)	897
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	2 cut(s)	1055, 1082
BstF5I	GGATG	3 cut(s)	301, 658, 691
BstMAI	GTCTC	2 cut(s)	235, 467
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 150, 412
BstNSI	RCATGY	1 cut(s)	787
BstPAI	GACNNNNGTC	1 cut(s)	609
BstSLI	GKGCMC	2 cut(s)	111, 570
BstV1I	GCAGC	3 cut(s)	799, 856, 1054
BstV2I	GAAGAC	2 cut(s)	1149, 1168
BstX2I	RGATCY	3 cut(s)	313, 508, 1024
BstYI	RGATCY	3 cut(s)	313, 508, 1024
BsuI	GTATCC	1 cut(s)	945
BsuRI	GGCC	5 cut(s)	20, 109, 423, 568, 1185
BtgI	CCRYGG	2 cut(s)	1055, 1082
BtsCI	GGATG	3 cut(s)	301, 658, 691
BtsIMutI	CAGTG	1 cut(s)	321
CaiI	CAGNNNCTG	2 cut(s)	176, 563
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	7 cut(s)	107, 108, 566, 567, 604, 829, 1000
Csp6I	GTAC	2 cut(s)	781, 1087
CviQI	GTAC	2 cut(s)	781, 1087
DdeI	CTNAG	1 cut(s)	40
EaeI	YGGCCR	2 cut(s)	18, 1183
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
Eco130I	CCWWGG	3 cut(s)	607, 1055, 1082
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	111, 570
Eco32I	GATATC	3 cut(s)	264, 359, 1171
Eco47I	GGWCC	3 cut(s)	604, 829, 1000
Eco88I	CYCGRG	2 cut(s)	183, 569
EcoO109I	RGGNCCY	3 cut(s)	107, 108, 604
EcoRV	GATATC	3 cut(s)	264, 359, 1171
EcoT14I	CCWWGG	3 cut(s)	607, 1055, 1082
EcoT38I	GRGCYC	2 cut(s)	111, 570
ErhI	CCWWGG	3 cut(s)	607, 1055, 1082
Esp3I	CGTCTC	1 cut(s)	467
FalI	AAGNNNNNCTT	2 cut(s)	1134, 1166
FaqI	GGGAC	4 cut(s)	113, 617, 842, 1013
FbaI	TGATCA	2 cut(s)	640, 651
Fnu4HI	GCNGC	3 cut(s)	788, 870, 1068
FokI	GGATG	3 cut(s)	308, 645, 698
FriOI	GRGCYC	2 cut(s)	111, 570
Fsp4HI	GCNGC	3 cut(s)	788, 870, 1068
FspBI	CTAG	4 cut(s)	582, 608, 794, 1022
GluI	GCNGC	3 cut(s)	788, 870, 1068
HaeIII	GGCC	5 cut(s)	20, 109, 423, 568, 1185
HapII	CCGG	1 cut(s)	317
HincII	GTYRAC	3 cut(s)	136, 163, 1039
HindII	GTYRAC	3 cut(s)	136, 163, 1039
HinfI	GANTC	4 cut(s)	173, 195, 251, 1051
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	4 cut(s)	136, 163, 397, 1039
Hpy188I	TCNGA	3 cut(s)	178, 474, 901
Hpy188III	TCNNGA	6 cut(s)	317, 441, 547, 662, 740, 882
Hpy8I	GTNNAC	4 cut(s)	136, 163, 397, 1039
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	8 cut(s)	121, 155, 342, 413, 434, 522, 771, 818
HpyCH4III	ACNGT	5 cut(s)	57, 127, 325, 637, 878
HpyCH4V	TGCA	7 cut(s)	242, 329, 787, 890, 944, 1070, 1125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 150, 412
HpyF3I	CTNAG	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	640, 651
LmnI	GCTCC	2 cut(s)	54, 1018
Lsp1109I	GCAGC	3 cut(s)	799, 856, 1054
LweI	GCATC	2 cut(s)	465, 685
MaeI	CTAG	4 cut(s)	582, 608, 794, 1022
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	7 cut(s)	58, 204, 659, 912, 914, 1154, 1168
MflI	RGATCY	3 cut(s)	313, 508, 1024
MhlI	GDGCHC	2 cut(s)	111, 570
MlsI	TGGCCA	2 cut(s)	20, 1185
MluCI	AATT	4 cut(s)	87, 281, 444, 1045
MluNI	TGGCCA	2 cut(s)	20, 1185
MlyI	GAGTC	3 cut(s)	167, 245, 1045
MmeI	TCCRAC	2 cut(s)	116, 996
MnlI	CCTC	8 cut(s)	97, 143, 192, 245, 640, 768, 801, 907
Mox20I	TGGCCA	2 cut(s)	20, 1185
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	423
MscI	TGGCCA	2 cut(s)	20, 1185
MslI	CAYNNNNRTG	1 cut(s)	1191
Msp20I	TGGCCA	2 cut(s)	20, 1185
MspI	CCGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	890
MwoI	GCNNNNNNNGC	3 cut(s)	115, 150, 412
NcoI	CCATGG	2 cut(s)	1055, 1082
NlaIV	GGNNCC	9 cut(s)	108, 109, 315, 568, 605, 830, 973, 1001, 1076
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	787
PaeR7I	CTCGAG	1 cut(s)	183
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	423
PctI	GAATGC	1 cut(s)	890
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	3 cut(s)	789, 871, 1069
PleI	GAGTC	3 cut(s)	167, 245, 1045
PpsI	GAGTC	3 cut(s)	167, 245, 1045
PpuMI	RGGWCCY	1 cut(s)	604
PshAI	GACNNNNGTC	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	604
PspN4I	GGNNCC	9 cut(s)	108, 109, 315, 568, 605, 830, 973, 1001, 1076
PspOMI	GGGCCC	2 cut(s)	107, 566
PspPI	GGNCC	7 cut(s)	107, 108, 566, 567, 604, 829, 1000
PspPPI	RGGWCCY	1 cut(s)	604
PspXI	VCTCGAGB	1 cut(s)	183
PstNI	CAGNNNCTG	2 cut(s)	176, 563
PsuI	RGATCY	3 cut(s)	313, 508, 1024
RsaI	GTAC	2 cut(s)	782, 1088
RsaNI	GTAC	2 cut(s)	781, 1087
RseI	CAYNNNNRTG	1 cut(s)	1191
SatI	GCNGC	3 cut(s)	788, 870, 1068
Sau96I	GGNCC	7 cut(s)	107, 108, 566, 567, 604, 829, 1000
SchI	GAGTC	3 cut(s)	167, 245, 1045
SduI	GDGCHC	2 cut(s)	111, 570
SfaNI	GCATC	2 cut(s)	465, 685
Sfr274I	CTCGAG	1 cut(s)	183
SinI	GGWCC	3 cut(s)	604, 829, 1000
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	1191
SmlI	CTYRAG	2 cut(s)	101, 183
SmoI	CTYRAG	2 cut(s)	101, 183
Sse9I	AATT	4 cut(s)	87, 281, 444, 1045
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	725
SspMI	CTAG	4 cut(s)	582, 608, 794, 1022
StuI	AGGCCT	1 cut(s)	423
StyI	CCWWGG	3 cut(s)	607, 1055, 1082
TaaI	ACNGT	5 cut(s)	57, 127, 325, 637, 878
TaqI	TCGA	4 cut(s)	148, 184, 210, 377
TasI	AATT	4 cut(s)	87, 281, 444, 1045
TfiI	GAWTC	1 cut(s)	195
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	787, 869, 1067
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	68, 275, 728
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	3 cut(s)	604, 829, 1000
XapI	RAATTY	3 cut(s)	87, 281, 1045
XceI	RCATGY	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	4 cut(s)	582, 608, 794, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.