Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005033

Physical Location & Seq

Genomic Coordinates Forward (+)

1118496 .. 1120084

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGAACGCAGGCTATATAGAGACATTAGGAATGGTGGTGACAGAACTAGAAGGTGGGATTCAGATAGATCACATCGATCATCATTTTTCTACGTCAAGGAGAAATAGGAGTAGGAGTGTTAGTCCTAGAACAAGAAAAACACGAGTTGATTCGGTGTCACCCAAACATCGACGAGAAAGTTCTCCACGTAGAACTCGAGCTGCGTCTAGATCACCTGGTCATCATACAGGAAGTAAGTCTTCTCCAAGAAAACGCTCAAGGTCAAAGTCTTCAGAAGGAAAACATCACTTAAGCGACAAAAAAGATGACACCCACTATGAAAAAGAAAAACATGGAGAAAGAAGGCGATCAAGGTCAGTGTCTGCAGAAGGTAAGGGACATAGAAGACAGTTATCACCAAGAAGTCCGGATGAAAAAAAATCCAGACAGAGAAGGCGGTCTAGGTCAAAATCTGTGGAAGTCAAGTACCGCTCTAATGAGAAACCAGACGAAACAAGAGATGAAAAATTAAAACGTCGTAGTAGAAGGCGGTCCAGGTCAAAATCTTTAGAAGATAAGCGCCACTCTGATGAGAAAACAAATGAAATAGAAGAAAAATCAAAGTATCGTGATAGAAGACGTTCTAGGTCAAAATCTGTGGAAGGGAAGCATCACTTGAAGGAGTTGGGCGAAGGTAGAGATAAAAGATCAAAGCATTGTGATAGAAGGCGGTCCCGGTCAGTATCTGTGGAGCCTAAGCACGACAGAAGACGTGGGTCATCCCCAAGAAGCTTGGATGACAATAAAGTGAAACACAGAAGGCTGTCAAGGTCAAAGTCTGCTGAAGGGAAGCATCGCTCCAATGATAGGGCATATAAAAGTAGAGACGAGAAAGAAAAGAGTCATAGGAGAAGACGGTCCAGGTCTACATCTGTAGAACCTAAGCGGCGTAGAGGAAGTATGTTATCCCCAAGAAGTACGGATGGAAAGAAACCAAAACACAGAAGAAGGCGCTCTAGGTCAGAATCTTCTGAAGGCAAGCATCCAGCTAGTTGTGGAAGGGATGAGAATGGTGGTGACAAATCAGAGTATCATGAAGATGGCAATGAGAAACCAAGTTCTGTGGTGAAACATTCAACAAAGAAAATTGATGATGGGGTGGTTATTTCAGCGGAAGAGGACTTGGACTCGAAGGAATCAATGCTAAATATGGGAACTGAAGATATTCCTCATACGAAAAAACATGGTTTTGTGCAAGATCTTGACAGTGAACGAACTTCTAGAGTCTCGTTAAATGTGGTGGAAAGCAAAGTGGAAGTGTCTTTCACTGAGAATCTAGCTCTTGGAACATCTGGACTGGAAAATCAAAATGGTTGTGAAAAGTTAACTGATGCGGATGATGTTTGCAGAACTGACTCCGGAAAGGATTACATCACAGTGAAGGCTCAGAAGAGAAGCTCCCTGATACCTAATGCAGATAACGCAGATATGTTTTCTGATGACACCATTGCCAAAGAGGAGAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Filamin RRM_1

Protein Analysis

503

Amino Acids

57.85

Weight (kDa)

10.31

Isoelectric Point (pI)

91.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23900 AT3G23900 AT3G23900 AT3G23900
fragaria_vesca	FvH4_4g13380 FvH4_4g13380
malus_domestica	MD04G1016500.v1.1
prunus_persica	Prupe.1G163200_v2.0.a1 Prupe.1G163200_v2.0.a1 Prupe.1G163200_v2.0.a1 Prupe.1G163200_v2.0.a1
pyrus_communis	pycom04g01250 pycom04g01260
rosa_chinensis	RchiOBHm_Chr4g0413751
rosa_laevigata	RLG00000008196
rosa_multiflora	Rmu_co7987260.1_g000001 Rmu_co8411523.1_g000001 Rmu_sc0004133.1_g000004 Rmu_sc0008092.1_g000014
rosa_roxburghii	Rroxscaffold_5G00357670
rosa_rugosa	Rorug04G0122900 Rorug04G0123000 Rorug04G0123100 Rorug04G0123100 Rorug04G0123100
rosa_samantha	Rh4AG182400 Rh4BG181500 Rh4CG193600 Rh4DG178000
rosa_wichuraiana	Rw4G015260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	905
AccIII	TCCGGA	2 cut(s)	406, 1397
AciI	CCGC	7 cut(s)	436, 469, 529, 709, 925, 1151, 1373
AcuI	CTGAAG	4 cut(s)	255, 843, 1032, 1218
AfaI	GTAC	2 cut(s)	467, 958
AfiI	CCNNNNNNNGG	1 cut(s)	846
AflII	CTTAAG	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	658, 1116
AjiI	CACGTC	1 cut(s)	752
AjnI	CCWGG	3 cut(s)	214, 533, 899
AluBI	AGCT	5 cut(s)	200, 771, 1028, 1319, 1437
AluI	AGCT	5 cut(s)	200, 771, 1028, 1319, 1437
Alw26I	GTCTC	3 cut(s)	14, 858, 1270
AlwNI	CAGNNNCTG	2 cut(s)	362, 725
Ama87I	CYCGRG	1 cut(s)	195
Aor13HI	TCCGGA	2 cut(s)	406, 1397
ApeKI	GCWGC	1 cut(s)	200
Asp700I	GAANNNNTTC	2 cut(s)	619, 1203
AspLEI	GCGC	2 cut(s)	561, 993
AspS9I	GGNCC	3 cut(s)	531, 711, 897
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	6 cut(s)	49, 150, 204, 387, 1067, 1117
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	531, 711, 897
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	6 cut(s)	231, 261, 391, 622, 754, 898
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	956, 1073, 1127
BciT130I	CCWGG	3 cut(s)	216, 535, 901
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	14, 858, 1270
BfaI	CTAG	9 cut(s)	47, 126, 207, 441, 624, 996, 1029, 1260, 1316
BfmI	CTRYAG	2 cut(s)	363, 912
BfoI	RGCGCY	2 cut(s)	562, 994
BfrI	CTTAAG	1 cut(s)	289
BglII	AGATCT	1 cut(s)	1237
BisI	GCNGC	2 cut(s)	201, 926
BlsI	GCNGC	2 cut(s)	202, 927
Bme1390I	CCNGG	4 cut(s)	216, 535, 715, 901
Bme18I	GGWCC	3 cut(s)	531, 711, 897
BmeT110I	CYCGRG	1 cut(s)	195
BmgBI	CACGTC	1 cut(s)	752
BmgT120I	GGNCC	3 cut(s)	531, 711, 897
BmiI	GGNNCC	2 cut(s)	713, 732
BmrFI	CCNGG	4 cut(s)	216, 535, 715, 901
BmsI	GCATC	4 cut(s)	658, 841, 1030, 1360
BoxI	GACNNNNGTC	1 cut(s)	754
BpiI	GAAGAC	6 cut(s)	231, 261, 391, 622, 754, 898
Bpu10I	CCTNAGC	2 cut(s)	735, 921
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	715
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	188
BsaWI	WCCGGW	2 cut(s)	406, 1397
BsaXI	ACNNNNNCTCC	5 cut(s)	100, 106, 130, 136, 1490
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	1 cut(s)	1341
Bse3DI	GCAATG	2 cut(s)	1090, 1485
BseAI	TCCGGA	2 cut(s)	406, 1397
BseBI	CCWGG	3 cut(s)	216, 535, 901
BseCI	ATCGAT	1 cut(s)	75
BseGI	GGATG	7 cut(s)	415, 758, 781, 967, 1021, 1048, 1381
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	2 cut(s)	1090, 1485
BseMII	CTCAG	2 cut(s)	1299, 1439
BseNI	ACTGG	1 cut(s)	1341
BseXI	GCAGC	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	407, 715, 1398
BslFI	GGGAC	2 cut(s)	390, 697
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	3 cut(s)	14, 858, 1270
BsmBI	CGTCTC	1 cut(s)	858
BsmFI	GGGAC	2 cut(s)	390, 697
BsoBI	CYCGRG	1 cut(s)	195
Bsp13I	TCCGGA	2 cut(s)	406, 1397
Bsp143I	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
BspACI	CCGC	7 cut(s)	436, 469, 529, 709, 925, 1151, 1373
BspCNI	CTCAG	2 cut(s)	1300, 1438
BspDI	ATCGAT	1 cut(s)	75
BspEI	TCCGGA	2 cut(s)	406, 1397
BspHI	TCATGA	1 cut(s)	1072
BspLI	GGNNCC	2 cut(s)	713, 732
BspMAI	CTGCAG	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	471
BsrDI	GCAATG	2 cut(s)	1090, 1485
BsrI	ACTGG	1 cut(s)	1341
BssMI	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	216, 535, 901
Bst4CI	ACNGT	4 cut(s)	390, 897, 1247, 1417
Bst6I	CTCTTC	2 cut(s)	1149, 1424
BstAFI	CTTAAG	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	10, 1019
BstDEI	CTNAG	4 cut(s)	735, 921, 1308, 1425
BstF5I	GGATG	7 cut(s)	415, 758, 781, 967, 1021, 1048, 1381
BstH2I	RGCGCY	2 cut(s)	562, 994
BstHHI	GCGC	2 cut(s)	561, 993
BstKTI	GATC	6 cut(s)	70, 79, 212, 350, 689, 1240
BstMAI	GTCTC	3 cut(s)	14, 858, 1270
BstMBI	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
BstMWI	GCNNNNNNNGC	1 cut(s)	1460
BstNI	CCWGG	3 cut(s)	216, 535, 901
BstPAI	GACNNNNGTC	1 cut(s)	754
BstSCI	CCNGG	4 cut(s)	214, 533, 713, 899
BstSFI	CTRYAG	2 cut(s)	363, 912
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	6 cut(s)	231, 261, 391, 622, 754, 898
BstX2I	RGATCY	1 cut(s)	1237
BstYI	RGATCY	1 cut(s)	1237
Bsu15I	ATCGAT	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	818
BtrI	CACGTC	1 cut(s)	752
BtsCI	GGATG	7 cut(s)	415, 758, 781, 967, 1021, 1048, 1381
BtsIMutI	CAGTG	4 cut(s)	363, 1252, 1305, 1422
Cac8I	GCNNGC	2 cut(s)	10, 1019
CaiI	CAGNNNCTG	2 cut(s)	362, 725
CciI	TCATGA	1 cut(s)	1072
CfoI	GCGC	2 cut(s)	561, 993
Cfr13I	GGNCC	3 cut(s)	531, 711, 897
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	1 cut(s)	192
CsiI	ACCWGGT	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	466, 957
CspCI	CAANNNNNGTGG	6 cut(s)	435, 470, 618, 653, 1083, 1118
CviAII	CATG	3 cut(s)	332, 1073, 1223
CviJI	RGCY	9 cut(s)	12, 200, 733, 771, 802, 1028, 1319, 1424, 1437
CviKI_1	RGCY	9 cut(s)	12, 200, 733, 771, 802, 1028, 1319, 1424, 1437
CviQI	GTAC	2 cut(s)	466, 957
DdeI	CTNAG	4 cut(s)	735, 921, 1308, 1425
DpnI	GATC	6 cut(s)	69, 78, 211, 349, 688, 1239
DpnII	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
Eam1104I	CTCTTC	2 cut(s)	1149, 1424
EarI	CTCTTC	2 cut(s)	1149, 1424
Eco47I	GGWCC	3 cut(s)	531, 711, 897
Eco57I	CTGAAG	4 cut(s)	255, 843, 1032, 1218
Eco88I	CYCGRG	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	214, 533, 899
Esp3I	CGTCTC	1 cut(s)	858
FaeI	CATG	3 cut(s)	335, 1076, 1226
FalI	AAGNNNNNCTT	4 cut(s)	223, 255, 638, 670
FaqI	GGGAC	2 cut(s)	390, 697
FatI	CATG	3 cut(s)	331, 1072, 1222
FblI	GTMKAC	1 cut(s)	905
Fnu4HI	GCNGC	2 cut(s)	201, 926
FokI	GGATG	7 cut(s)	422, 745, 788, 974, 1008, 1055, 1388
Fsp4HI	GCNGC	2 cut(s)	201, 926
FspBI	CTAG	9 cut(s)	47, 126, 207, 441, 624, 996, 1029, 1260, 1316
GlaI	GCGC	2 cut(s)	560, 992
GluI	GCNGC	2 cut(s)	201, 926
HaeII	RGCGCY	2 cut(s)	562, 994
HapII	CCGG	3 cut(s)	407, 715, 1398
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	561, 993
Hin1II	CATG	3 cut(s)	335, 1076, 1226
Hin6I	GCGC	2 cut(s)	559, 991
HinP1I	GCGC	2 cut(s)	559, 991
HincII	GTYRAC	1 cut(s)	1365
HindII	GTYRAC	1 cut(s)	1365
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	9 cut(s)	58, 149, 880, 1004, 1166, 1175, 1263, 1312, 1394
HpaI	GTTAAC	1 cut(s)	1365
HpaII	CCGG	3 cut(s)	407, 715, 1398
HphI	GGTGA	6 cut(s)	49, 150, 204, 387, 1067, 1117
Hpy166II	GTNNAC	3 cut(s)	906, 1250, 1365
Hpy188I	TCNGA	8 cut(s)	63, 274, 568, 1003, 1012, 1066, 1428, 1477
Hpy188III	TCNNGA	9 cut(s)	207, 407, 423, 608, 1073, 1241, 1260, 1332, 1398
Hpy8I	GTNNAC	3 cut(s)	906, 1250, 1365
Hpy99I	CGWCG	2 cut(s)	174, 519
HpyCH4III	ACNGT	4 cut(s)	390, 897, 1247, 1417
HpyCH4IV	ACGT	5 cut(s)	92, 187, 514, 619, 751
HpyCH4V	TGCA	4 cut(s)	365, 1234, 1386, 1454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1460
HpyF3I	CTNAG	4 cut(s)	735, 921, 1308, 1425
HpySE526I	ACGT	5 cut(s)	92, 187, 514, 619, 751
Hsp92II	CATG	3 cut(s)	335, 1076, 1226
HspAI	GCGC	2 cut(s)	559, 991
Kpn2I	TCCGGA	2 cut(s)	406, 1397
KspAI	GTTAAC	1 cut(s)	1365
Kzo9I	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
LmnI	GCTCC	3 cut(s)	730, 842, 1442
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	4 cut(s)	658, 841, 1030, 1360
MabI	ACCWGGT	1 cut(s)	214
MaeI	CTAG	9 cut(s)	47, 126, 207, 441, 624, 996, 1029, 1260, 1316
MaeII	ACGT	5 cut(s)	92, 187, 514, 619, 751
MaeIII	GTNAC	3 cut(s)	37, 156, 1055
MalI	GATC	6 cut(s)	69, 78, 211, 349, 688, 1239
MbiI	CCGCTC	1 cut(s)	471
MboI	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
MflI	RGATCY	1 cut(s)	1237
MluCI	AATT	2 cut(s)	506, 1125
MlyI	GAGTC	4 cut(s)	889, 1160, 1272, 1388
MnlI	CCTC	4 cut(s)	926, 1150, 1218, 1489
MroI	TCCGGA	2 cut(s)	406, 1397
MroXI	GAANNNNTTC	2 cut(s)	619, 1203
MseI	TTAA	4 cut(s)	290, 509, 1271, 1364
MslI	CAYNNNNRTG	3 cut(s)	567, 1077, 1415
MspA1I	CMGCKG	1 cut(s)	1151
MspCI	CTTAAG	1 cut(s)	289
MspI	CCGG	3 cut(s)	407, 715, 1398
MspR9I	CCNGG	4 cut(s)	216, 535, 715, 901
MvaI	CCWGG	3 cut(s)	216, 535, 901
MwoI	GCNNNNNNNGC	1 cut(s)	1460
NciI	CCSGG	1 cut(s)	715
NdeII	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
NlaIII	CATG	3 cut(s)	335, 1076, 1226
NlaIV	GGNNCC	2 cut(s)	713, 732
NmuCI	GTSAC	3 cut(s)	37, 156, 1055
PaeR7I	CTCGAG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	1072
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PdmI	GAANNNNTTC	2 cut(s)	619, 1203
PfeI	GAWTC	5 cut(s)	58, 149, 1004, 1175, 1312
PkrI	GCNGC	2 cut(s)	202, 927
PleI	GAGTC	4 cut(s)	888, 1160, 1271, 1388
PpsI	GAGTC	4 cut(s)	888, 1160, 1271, 1388
Ppu21I	YACGTR	1 cut(s)	188
PshAI	GACNNNNGTC	1 cut(s)	754
Psp6I	CCWGG	3 cut(s)	214, 533, 899
PspGI	CCWGG	3 cut(s)	214, 533, 899
PspN4I	GGNNCC	2 cut(s)	713, 732
PspPI	GGNCC	3 cut(s)	531, 711, 897
PspXI	VCTCGAGB	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	362, 725
PsuI	RGATCY	1 cut(s)	1237
RsaI	GTAC	2 cut(s)	467, 958
RsaNI	GTAC	2 cut(s)	466, 957
RseI	CAYNNNNRTG	3 cut(s)	567, 1077, 1415
SaqAI	TTAA	4 cut(s)	290, 509, 1271, 1364
SatI	GCNGC	2 cut(s)	201, 926
Sau3AI	GATC	6 cut(s)	67, 76, 209, 347, 686, 1237
Sau96I	GGNCC	3 cut(s)	531, 711, 897
SchI	GAGTC	4 cut(s)	889, 1160, 1272, 1388
ScrFI	CCNGG	4 cut(s)	216, 535, 715, 901
SexAI	ACCWGGT	1 cut(s)	214
SfaNI	GCATC	4 cut(s)	658, 841, 1030, 1360
SfcI	CTRYAG	2 cut(s)	363, 912
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	3 cut(s)	531, 711, 897
SlaI	CTCGAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	3 cut(s)	567, 1077, 1415
SmlI	CTYRAG	3 cut(s)	195, 256, 289
SmoI	CTYRAG	3 cut(s)	195, 256, 289
Sse9I	AATT	2 cut(s)	506, 1125
SsiI	CCGC	7 cut(s)	436, 469, 529, 709, 925, 1151, 1373
SspMI	CTAG	9 cut(s)	47, 126, 207, 441, 624, 996, 1029, 1260, 1316
StyD4I	CCNGG	4 cut(s)	214, 533, 713, 899
TaaI	ACNGT	4 cut(s)	390, 897, 1247, 1417
TaiI	ACGT	5 cut(s)	95, 190, 517, 622, 754
TaqI	TCGA	4 cut(s)	75, 169, 196, 1169
TasI	AATT	2 cut(s)	506, 1125
TauI	GCSGC	1 cut(s)	928
TfiI	GAWTC	5 cut(s)	58, 149, 1004, 1175, 1312
Tru1I	TTAA	4 cut(s)	290, 509, 1271, 1364
Tru9I	TTAA	4 cut(s)	290, 509, 1271, 1364
TscAI	CASTG	4 cut(s)	363, 1252, 1312, 1422
TseFI	GTSAC	3 cut(s)	37, 156, 1055
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	3 cut(s)	37, 156, 1055
TspDTI	ATGAA	6 cut(s)	17, 333, 426, 516, 597, 1089
TspGWI	ACGGA	1 cut(s)	974
TspRI	CASTG	4 cut(s)	363, 1252, 1312, 1422
Vha464I	CTTAAG	1 cut(s)	289
VpaK11BI	GGWCC	3 cut(s)	531, 711, 897
XbaI	TCTAGA	2 cut(s)	206, 1259
XhoI	CTCGAG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	905
XmnI	GAANNNNTTC	2 cut(s)	619, 1203
XspI	CTAG	9 cut(s)	47, 126, 207, 441, 624, 996, 1029, 1260, 1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.