Rorug04G0122900

Filamin-type immunoglobulin domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005033
Physical Location & Seq
Reverse (-)
19496809 .. 19497539
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0122900.1

Sequence Viewer

Length: 342 bp
ATGCCGAAGAAGCCTGCAACCCATTACTGTGAATATGCAGTGGTGCAGCCCTCGAGCAACACTGTGTCAAATGAAATACAGAACAAGGTGAGGTCTTCCTACAACGACCAGTACAGCAGGTCTTCCAGCAATGTTACCCGAAGCTACAAGGCGTCTGAGTACGTGGCGGACAAGAGTACCGGGCAGATGGGTTACAAACAAGAGGCTAAGTACACCTGCACTGATAGGTATGTTGACAAGGAGCAAGGGTTTACCACAGAGTACAAGACGCAGTTGAAGCAGACCAAGTCTGTCTACCCAAACAAGAGCAGCTCCTCCAACAATCGCATCAACTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Filamin RRM_1

Protein Analysis

113

Amino Acids

13.04

Weight (kDa)

9.35

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
Acc36I ACCTGC 2 cut(s) 108, 224
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 5 cut(s) 113, 161, 178, 212, 263
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 2 cut(s) 144, 312
AluI AGCT 2 cut(s) 144, 312
Ama87I CYCGRG 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 46, 309
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 52
BaeI ACNNNNGTAYC 2 cut(s) 160, 193
BbsI GAAGAC 2 cut(s) 87, 114
BbvI GCAGC 2 cut(s) 58, 321
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 181
BfuAI ACCTGC 2 cut(s) 108, 224
BisI GCNGC 2 cut(s) 47, 310
BlsI GCNGC 2 cut(s) 48, 311
Bme1390I CCNGG 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 87, 114
BpuMI CCSGG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 2 cut(s) 58, 321
BsgI GTGCAG 2 cut(s) 65, 202
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 52
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 148
BspMI ACCTGC 2 cut(s) 108, 224
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 29, 64
BstACI GRCGYC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 156, 207
BstMWI GCNNNNNNNGC 2 cut(s) 10, 277
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 58, 321
BstV2I GAAGAC 2 cut(s) 87, 114
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 45, 60, 219
BveI ACCTGC 2 cut(s) 108, 224
Cac8I GCNNGC 1 cut(s) 15
CseI GACGC 2 cut(s) 141, 277
Csp6I GTAC 5 cut(s) 112, 160, 177, 211, 262
CviJI RGCY 5 cut(s) 13, 49, 144, 206, 312
CviKI_1 RGCY 5 cut(s) 13, 49, 144, 206, 312
CviQI GTAC 5 cut(s) 112, 160, 177, 211, 262
DdeI CTNAG 2 cut(s) 156, 207
EciI GGCGGA 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 52
FaiI YATR 2 cut(s) 36, 231
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 47, 310
Fsp4HI GCNGC 2 cut(s) 47, 310
GluI GCNGC 2 cut(s) 47, 310
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 141, 277
Hin1I GRCGYC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 4 cut(s) 213, 235, 252, 295
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 4 cut(s) 213, 235, 252, 295
HpyCH4III ACNGT 2 cut(s) 29, 64
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 17, 38, 46, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 277
HpyF3I CTNAG 2 cut(s) 156, 207
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 152
LmnI GCTCC 2 cut(s) 241, 317
LpnPI CCDG 6 cut(s) 27, 103, 122, 139, 193, 229
Lsp1109I GCAGC 2 cut(s) 58, 321
LweI GCATC 1 cut(s) 336
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 133, 191
MboII GAAGA 3 cut(s) 19, 87, 114
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 4 cut(s) 61, 84, 196, 325
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 10, 277
NciI CCSGG 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 224
PflFI GACNNNGTC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 48, 311
Ppu21I YACGTR 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 286
RsaI GTAC 5 cut(s) 113, 161, 178, 212, 263
RsaNI GTAC 5 cut(s) 112, 160, 177, 211, 262
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 2 cut(s) 47, 310
ScrFI CCNGG 1 cut(s) 181
SetI ASST 8 cut(s) 90, 95, 122, 146, 165, 218, 230, 314
SfaNI GCATC 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 29, 64
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 53
TatI WGTACW 3 cut(s) 111, 210, 261
TscAI CASTG 3 cut(s) 45, 67, 226
TseI GCWGC 2 cut(s) 46, 309
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 3 cut(s) 45, 67, 226
Tth111I GACNNNGTC 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.