Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411523.1

Orthogroup ID

OG0005033

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1296

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411523.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1138 bp

atgcggtctccatctcctcgtgcaaggtcgaaatccagatcgagatcacctatcaactatcgccgaaggtggaagtctccttcttactctcctccaccccgctatgcaagaggtcgtagatccagatccccattcaggtcacgccaccattcaatctatgacaatggccgacggtcatatagagatgtttggaatggcagtgaaagaagtagaaggcgggattcagatagatcagatgatcatcagtcatatgcctcaaggagaaataggagtaggagtgtttctcctcgaacaagaaaatcacatcgagttgattcgttatcacccaaacatcgacgagaacgttctccacgtagagcaactcgtgctgtgtctagatcaccaggtcatcatacggggagtaagttatctccaagaggtgatgaagacaaatccaagcagaaaaaaagttctaggtccaattctccagaggataaacgtctcttaaatgacaaaaaagatgaaacccactacgaaacatcaaagcatcgagaaagaaggcgatccaggtcagtttcagcggaaggtaagcatcacagaaggcggtcatctccaagaagtctggatgaaaacaaatccaaacacaagaggcggtctaggtcaaaatctgtggaagtaaagctgcgctcagcggatgaaactaggggtcgtaaactaaaacaccgtagtggaaggcggtccaggtcaaaatctttggaaggtaagcatctctctgatgagaaaactaatgaaatgagagatgaaaaatcaaaacatcgtgatagaaggcgttcaaggtcaaaatctgtggaagggaggcgtcactcgaaggaggtggatggaggtagagataaaaaatccaagcgtcgtgatagaaggcaatcaaggtcaaggtccagatcatcatctccagatcctaagcttgccagacgaggggagtcatctccaagaagacttgatgaacacaaattgaagcacagaaggaggtcaaggtcaagatctgctgaaggaaagcagcgcctcaatgatagagctgataaaagtagagatgaaaaagcaaacaggcataggagaagaaggtccagatcagtatcactagaacgtgagagccagagaggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Filamin RRM_1

Protein Analysis

379

Amino Acids

45.24

Weight (kDa)

11.85

Isoelectric Point (pI)

132.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23900 AT3G23900 AT3G23900 AT3G23900
fragaria_vesca	FvH4_4g13380 FvH4_4g13380
malus_domestica	MD04G1016500.v1.1
prunus_persica	Prupe.1G163200_v2.0.a1 Prupe.1G163200_v2.0.a1 Prupe.1G163200_v2.0.a1 Prupe.1G163200_v2.0.a1
pyrus_communis	pycom04g01250 pycom04g01260
rosa_chinensis	RchiOBHm_Chr4g0413751
rosa_laevigata	RLG00000008196
rosa_multiflora	Rmu_co7987260.1_g000001 Rmu_co8411523.1_g000001 Rmu_sc0004133.1_g000004 Rmu_sc0008092.1_g000014
rosa_roxburghii	Rroxscaffold_5G00357670
rosa_rugosa	Rorug04G0122900 Rorug04G0123000 Rorug04G0123100 Rorug04G0123100 Rorug04G0123100
rosa_samantha	Rh4AG182400 Rh4BG181500 Rh4CG193600 Rh4DG178000
rosa_wichuraiana	Rw4G015260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	4, 100, 217, 560, 583, 631, 671, 715
AclI	AACGTT	1 cut(s)	343
AclWI	GGATC	4 cut(s)	114, 120, 537, 926
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	1044
AcyI	GRCGYC	1 cut(s)	838
AfiI	CCNNNNNNNGG	2 cut(s)	135, 951
AgsI	TTSAA	3 cut(s)	153, 813, 991
AjnI	CCWGG	3 cut(s)	382, 545, 719
AleI	CACNNNNGTG	1 cut(s)	705
AluBI	AGCT	3 cut(s)	661, 940, 1052
AluI	AGCT	3 cut(s)	661, 940, 1052
Alw26I	GTCTC	3 cut(s)	12, 81, 485
AlwI	GGATC	4 cut(s)	114, 120, 537, 926
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	661, 1033
Asp700I	GAANNNNTTC	1 cut(s)	808
AspLEI	GCGC	2 cut(s)	666, 1038
AspS9I	GGNCC	4 cut(s)	456, 717, 912, 1098
AsuHPI	GGTGA	4 cut(s)	39, 315, 372, 431
AvaII	GGWCC	4 cut(s)	456, 717, 912, 1098
BauI	CACGAG	2 cut(s)	18, 363
BbsI	GAAGAC	2 cut(s)	432, 976
BbvI	GCAGC	2 cut(s)	648, 1045
BccI	CCATC	2 cut(s)	19, 851
BciT130I	CCWGG	3 cut(s)	384, 547, 721
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	12, 81, 485
BfaI	CTAG	5 cut(s)	375, 453, 636, 681, 1115
BfoI	RGCGCY	1 cut(s)	1039
BglII	AGATCT	1 cut(s)	1016
BisI	GCNGC	2 cut(s)	662, 1034
BlpI	GCTNAGC	1 cut(s)	667
BlsI	GCNGC	2 cut(s)	663, 1035
Bme1390I	CCNGG	3 cut(s)	384, 547, 721
Bme18I	GGWCC	4 cut(s)	456, 717, 912, 1098
BmgT120I	GGNCC	4 cut(s)	456, 717, 912, 1098
BmrFI	CCNGG	3 cut(s)	384, 547, 721
BmsI	GCATC	3 cut(s)	535, 580, 754
BpiI	GAAGAC	2 cut(s)	432, 976
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	2 cut(s)	450, 912
Bpu10I	CCTNAGC	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	5 cut(s)	43, 124, 240, 922, 1108
BsaHI	GRCGYC	1 cut(s)	838
BsaI	GGTCTC	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 951
Bse8I	GATNNNNATC	5 cut(s)	43, 124, 240, 922, 1108
BseBI	CCWGG	3 cut(s)	384, 547, 721
BseGI	GGATG	3 cut(s)	610, 679, 862
BseJI	GATNNNNATC	5 cut(s)	43, 124, 240, 922, 1108
BseLI	CCNNNNNNNGG	2 cut(s)	135, 951
BseMII	CTCAG	1 cut(s)	681
BseRI	GAGGAG	3 cut(s)	6, 81, 276
BseXI	GCAGC	2 cut(s)	648, 1045
BshFI	GGCC	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	135, 951
BsmAI	GTCTC	3 cut(s)	12, 81, 485
BsmBI	CGTCTC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	12
Bsp1720I	GCTNAGC	1 cut(s)	667
BspACI	CCGC	8 cut(s)	4, 100, 217, 560, 583, 631, 671, 715
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	680
BspPI	GGATC	4 cut(s)	114, 120, 537, 926
BspTNI	GGTCTC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	838
BssSI	CACGAG	2 cut(s)	18, 363
Bst2BI	CACGAG	2 cut(s)	18, 363
Bst2UI	CCWGG	3 cut(s)	384, 547, 721
Bst4CI	ACNGT	2 cut(s)	174, 704
BstACI	GRCGYC	1 cut(s)	838
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	2 cut(s)	667, 936
BstF5I	GGATG	3 cut(s)	610, 679, 862
BstH2I	RGCGCY	1 cut(s)	1039
BstHHI	GCGC	2 cut(s)	666, 1038
BstMAI	GTCTC	3 cut(s)	12, 81, 485
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	3 cut(s)	384, 547, 721
BstSCI	CCNGG	3 cut(s)	382, 545, 719
BstV1I	GCAGC	2 cut(s)	648, 1045
BstV2I	GAAGAC	2 cut(s)	432, 976
BstX2I	RGATCY	4 cut(s)	119, 125, 931, 1016
BstYI	RGATCY	4 cut(s)	119, 125, 931, 1016
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	610, 679, 862
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	942
CfoI	GCGC	2 cut(s)	666, 1038
Cfr13I	GGNCC	4 cut(s)	456, 717, 912, 1098
CseI	GACGC	2 cut(s)	827, 872
CsiI	ACCWGGT	1 cut(s)	382
CspCI	CAANNNNNGTGG	4 cut(s)	630, 665, 807, 842
CviJI	RGCY	5 cut(s)	168, 661, 940, 1052, 1128
CviKI_1	RGCY	5 cut(s)	168, 661, 940, 1052, 1128
DdeI	CTNAG	2 cut(s)	667, 936
EaeI	YGGCCR	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	4 cut(s)	456, 717, 912, 1098
Eco57I	CTGAAG	1 cut(s)	1044
EcoRII	CCWGG	3 cut(s)	382, 545, 719
Esp3I	CGTCTC	1 cut(s)	485
FaiI	YATR	8 cut(s)	105, 159, 178, 180, 250, 252, 393, 1086
FauI	CCCGC	2 cut(s)	107, 210
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	662, 1034
FokI	GGATG	3 cut(s)	617, 686, 869
Fsp4HI	GCNGC	2 cut(s)	662, 1034
FspBI	CTAG	5 cut(s)	375, 453, 636, 681, 1115
GlaI	GCGC	2 cut(s)	665, 1037
GluI	GCNGC	2 cut(s)	662, 1034
GsuI	CTGGAG	2 cut(s)	450, 912
HaeII	RGCGCY	1 cut(s)	1039
HaeIII	GGCC	1 cut(s)	168
HgaI	GACGC	2 cut(s)	827, 872
HhaI	GCGC	2 cut(s)	666, 1038
Hin1I	GRCGYC	1 cut(s)	838
Hin6I	GCGC	2 cut(s)	664, 1036
HinP1I	GCGC	2 cut(s)	664, 1036
HindIII	AAGCTT	1 cut(s)	938
HinfI	GANTC	3 cut(s)	221, 314, 956
HphI	GGTGA	4 cut(s)	39, 315, 372, 431
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	3 cut(s)	226, 235, 754
Hpy8I	GTNNAC	1 cut(s)	692
Hpy99I	CGWCG	3 cut(s)	174, 339, 888
HpyCH4III	ACNGT	2 cut(s)	174, 704
HpyCH4IV	ACGT	4 cut(s)	343, 352, 478, 1120
HpyCH4V	TGCA	2 cut(s)	23, 107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	667, 936
HpySE526I	ACGT	4 cut(s)	343, 352, 478, 1120
Hsp92I	GRCGYC	1 cut(s)	838
HspAI	GCGC	2 cut(s)	664, 1036
Ksp22I	TGATCA	1 cut(s)	238
Lsp1109I	GCAGC	2 cut(s)	648, 1045
LweI	GCATC	3 cut(s)	535, 580, 754
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	5 cut(s)	375, 453, 636, 681, 1115
MaeII	ACGT	4 cut(s)	343, 352, 478, 1120
MaeIII	GTNAC	2 cut(s)	138, 839
MboII	GAAGA	3 cut(s)	437, 981, 1104
MflI	RGATCY	4 cut(s)	119, 125, 931, 1016
MluCI	AATT	2 cut(s)	460, 986
MlyI	GAGTC	1 cut(s)	965
MroXI	GAANNNNTTC	1 cut(s)	808
MseI	TTAA	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	2 cut(s)	560, 671
MspR9I	CCNGG	3 cut(s)	384, 547, 721
MvaI	CCWGG	3 cut(s)	384, 547, 721
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	138, 839
OliI	CACNNNNGTG	1 cut(s)	705
PcsI	WCGNNNNNNNCGW	2 cut(s)	340, 349
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	221, 314
PkrI	GCNGC	2 cut(s)	663, 1035
PleI	GAGTC	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	964
Ppu21I	YACGTR	1 cut(s)	353
Psp1406I	AACGTT	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	382, 545, 719
PspGI	CCWGG	3 cut(s)	382, 545, 719
PspPI	GGNCC	4 cut(s)	456, 717, 912, 1098
PsuI	RGATCY	4 cut(s)	119, 125, 931, 1016
RseI	CAYNNNNRTG	1 cut(s)	705
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	2 cut(s)	662, 1034
Sau96I	GGNCC	4 cut(s)	456, 717, 912, 1098
SchI	GAGTC	1 cut(s)	965
ScrFI	CCNGG	3 cut(s)	384, 547, 721
SexAI	ACCWGGT	1 cut(s)	382
SfaNI	GCATC	3 cut(s)	535, 580, 754
SinI	GGWCC	4 cut(s)	456, 717, 912, 1098
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	460, 986
SsiI	CCGC	8 cut(s)	4, 100, 217, 560, 583, 631, 671, 715
SspMI	CTAG	5 cut(s)	375, 453, 636, 681, 1115
StyD4I	CCNGG	3 cut(s)	382, 545, 719
TaaI	ACNGT	2 cut(s)	174, 704
TaiI	ACGT	4 cut(s)	346, 355, 481, 1123
TaqI	TCGA	7 cut(s)	29, 41, 289, 307, 334, 529, 845
TasI	AATT	2 cut(s)	460, 986
TfiI	GAWTC	2 cut(s)	221, 314
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	138, 839
TseI	GCWGC	2 cut(s)	661, 1033
Tsp45I	GTSAC	2 cut(s)	138, 839
TspDTI	ATGAA	8 cut(s)	438, 516, 621, 690, 783, 795, 993, 1083
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	4 cut(s)	456, 717, 912, 1098
XbaI	TCTAGA	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	5 cut(s)	375, 453, 636, 681, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.