pycom04g07390

NADH dehydrogenase (ubiquinone) complex I, assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015411
Physical Location & Seq
Forward (+)
7860561 .. 7861472
912 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGAATGGTGCTTCAGCATCTAGTAGCTTAAGATCAGCTTTCTCATACTGTGTGCAGCAAGTCCGTAGTTATGATTACCATAACTACCTTTGCCTCCTCGAACTCCCGCCTCACATGCGGAAGGTTGCATTTGCAGTCCGTGCCTTAAATGTTGAAACAGCTCGTGCTATGGATGTTGCTTCTGATCCCAGGGTTGGTCTTATGCGCCTTGTCTGGTGGCAAGAAGCCATAGATAAGATCTATGCTAACAAGTTAATTGAGCACCCAACTGCTCAAGCCCTGTTGTCAGTGGTACGCGAGTACAAAATTAGCAAGGGATGGCTAAAACGGTCTGTAGAAGCTCGGATCAATGATGCAAGAAAGGAGGTTGGTGACACCCCAGAGAAAATTGAAGACTTGGAGAAATATGCTGAAGATACAGTATCGACTATTCTTTACATGACACTTCAAGCTGGTGGTGTCAACTCCACTGCAGCCGATCATGCAGCATCGCATATTGGTAAAGCAAATGGGCTTCTTTTGCTGATTAAGTCACTGCCATACCATGGTAGACGCAACCGGCATTTTTCTTACATACCAATCGAAGTGGCAGCCAAGCATGGATTGTTGGTTAAGCATGGAGGTCAATCGGAGATTCATTTGGACTCTCGCGAGGGCTTATGTGAAGCTGTTTTTGAGATGGCCTCAGTAGCTAATGTCCATTTGCAGAAGGCTCGTGACTTAGCTGGTACAGTACCTGTAGAGGCTCGCCCGGTGCTGCTGCCGGCGGTGCCTGCCCAGATTCTTTTGGACTCACTGAGACAAGTGAATTTTGATGTGTTTGATCCAAAGTTAGCAAGAGGGATTCATGGCATTCCTCCTTTGTGGTATCAGTTGAAATTAAAGTGGCATTCGTGGAGGGGAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
SQS_PSY

Protein Analysis

304

Amino Acids

33.96

Weight (kDa)

9.2

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQS_PSY PF00494 21 - 276 3.9e-52 Squalene/phytoene synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015411)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62730 AT1G62730
fragaria_vesca FvH4_5g00371
malus_domestica MD04G1082000.v1.1
prunus_persica Prupe.5G076400_v2.0.a1
pyrus_communis pycom04g07390
rosa_chinensis RchiOBHm_Chr7g0202141
rosa_laevigata RLG00000003622
rosa_multiflora Rmu_co8054622.1_g000001
rosa_roxburghii Rroxscaffold_3G00254810
rosa_rugosa Rorug07G0068400
rosa_samantha Rh7AG195800 Rh7BG197100 Rh7CG206900 Rh7DG202400
rosa_wichuraiana Rw7G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 769
AccB7I CCANNNNNTGG 1 cut(s) 545
AccI GTMKAC 1 cut(s) 550
AccII CGCG 2 cut(s) 297, 651
AciI CCGC 3 cut(s) 107, 118, 767
AclWI GGATC 3 cut(s) 179, 353, 818
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 4 cut(s) 294, 302, 730, 735
AfiI CCNNNNNNNGG 2 cut(s) 194, 545
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 4 cut(s) 155, 392, 449, 877
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 8 cut(s) 27, 38, 161, 341, 452, 668, 692, 725
AluI AGCT 8 cut(s) 27, 38, 161, 341, 452, 668, 692, 725
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 3 cut(s) 179, 353, 818
AlwNI CAGNNNCTG 1 cut(s) 737
AoxI GGCC 1 cut(s) 681
ApeKI GCWGC 6 cut(s) 55, 473, 485, 590, 757, 760
ApoI RAATTY 1 cut(s) 808
AspLEI GCGC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 1 cut(s) 383
BaeI ACNNNNGTAYC 2 cut(s) 284, 317
BanI GGYRCC 1 cut(s) 769
BauI CACGAG 2 cut(s) 162, 714
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 6 cut(s) 67, 485, 497, 602, 744, 747
BccI CCATC 2 cut(s) 312, 673
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 1 cut(s) 793
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 3 cut(s) 333, 471, 738
BfrI CTTAAG 1 cut(s) 28
BglII AGATCT 1 cut(s) 237
BisI GCNGC 6 cut(s) 56, 474, 486, 591, 758, 761
BlsI GCNGC 6 cut(s) 57, 475, 487, 592, 759, 762
Bme1390I CCNGG 2 cut(s) 190, 752
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 2 cut(s) 190, 752
BmsI GCATC 3 cut(s) 26, 343, 497
BpiI GAAGAC 1 cut(s) 399
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 188, 189, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 545
Bse118I RCCGGY 2 cut(s) 558, 763
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 3 cut(s) 188, 189, 544
BseGI GGATG 2 cut(s) 178, 323
BseLI CCNNNNNNNGG 2 cut(s) 194, 545
BseMII CTCAG 2 cut(s) 699, 788
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 6 cut(s) 67, 485, 497, 602, 744, 747
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 297, 651
BshFI GGCC 1 cut(s) 683
BshNI GGYRCC 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 3 cut(s) 559, 752, 764
BslI CCNNNNNNNGG 2 cut(s) 194, 545
BsmAI GTCTC 1 cut(s) 793
BsmI GAATGC 2 cut(s) 852, 889
BsnI GGCC 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 6 cut(s) 32, 184, 237, 345, 478, 823
Bsp19I CCATGG 1 cut(s) 544
Bsp68I TCGCGA 1 cut(s) 651
BspACI CCGC 3 cut(s) 107, 118, 767
BspANI GGCC 1 cut(s) 683
BspCNI CTCAG 2 cut(s) 698, 789
BspFNI CGCG 2 cut(s) 297, 651
BspLI GGNNCC 1 cut(s) 771
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 3 cut(s) 179, 353, 818
BspT107I GGYRCC 1 cut(s) 769
BspTI CTTAAG 1 cut(s) 28
BsrFI RCCGGY 2 cut(s) 558, 763
BssAI RCCGGY 2 cut(s) 558, 763
BssECI CCNNGG 3 cut(s) 188, 189, 544
BssMI GATC 6 cut(s) 32, 184, 237, 345, 478, 823
BssSI CACGAG 2 cut(s) 162, 714
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 2 cut(s) 162, 714
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 4 cut(s) 50, 330, 421, 733
BstAFI CTTAAG 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 748, 765, 774
BstDEI CTNAG 3 cut(s) 685, 721, 797
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 178, 323
BstFNI CGCG 2 cut(s) 297, 651
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 6 cut(s) 35, 187, 240, 348, 481, 826
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 6 cut(s) 32, 184, 237, 345, 478, 823
BstMWI GCNNNNNNNGC 7 cut(s) 115, 140, 482, 520, 689, 769, 773
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 188, 750
BstSFI CTRYAG 3 cut(s) 333, 471, 738
BstUI CGCG 2 cut(s) 297, 651
BstV1I GCAGC 6 cut(s) 67, 485, 497, 602, 744, 747
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 683
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 2 cut(s) 178, 323
BtsI GCAGTG 2 cut(s) 468, 533
BtsIMutI CAGTG 4 cut(s) 294, 468, 533, 794
BtuMI TCGCGA 1 cut(s) 651
Cac8I GCNNGC 3 cut(s) 748, 765, 774
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 2 cut(s) 558, 763
CseI GACGC 1 cut(s) 561
Csp6I GTAC 4 cut(s) 293, 301, 729, 734
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 7 cut(s) 115, 439, 482, 545, 599, 617, 848
CviQI GTAC 4 cut(s) 293, 301, 729, 734
DdeI CTNAG 3 cut(s) 685, 721, 797
DpnI GATC 6 cut(s) 34, 186, 239, 347, 480, 825
DpnII GATC 6 cut(s) 32, 184, 237, 345, 478, 823
Eco130I CCWWGG 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 544
FaeI CATG 7 cut(s) 118, 442, 485, 548, 602, 620, 851
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 7 cut(s) 114, 438, 481, 544, 598, 616, 847
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 6 cut(s) 56, 474, 486, 591, 758, 761
FokI GGATG 2 cut(s) 185, 330
Fsp4HI GCNGC 6 cut(s) 56, 474, 486, 591, 758, 761
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 206
GluI GCNGC 6 cut(s) 56, 474, 486, 591, 758, 761
HaeIII GGCC 1 cut(s) 683
HapII CCGG 3 cut(s) 559, 752, 764
HgaI GACGC 1 cut(s) 561
HhaI GCGC 1 cut(s) 207
Hin1II CATG 7 cut(s) 118, 442, 485, 548, 602, 620, 851
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 5 cut(s) 634, 644, 781, 791, 844
HpaII CCGG 3 cut(s) 559, 752, 764
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 463, 551
Hpy188I TCNGA 3 cut(s) 184, 345, 631
Hpy188III TCNNGA 2 cut(s) 650, 716
Hpy8I GTNNAC 2 cut(s) 463, 551
HpyAV CCTTC 2 cut(s) 115, 703
HpyCH4III ACNGT 4 cut(s) 50, 330, 421, 733
HpyCH4V TGCA 7 cut(s) 55, 128, 134, 356, 473, 485, 706
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 140, 482, 520, 689, 769, 773
HpyF3I CTNAG 3 cut(s) 685, 721, 797
Hsp92II CATG 7 cut(s) 118, 442, 485, 548, 602, 620, 851
HspAI GCGC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 763
KroNI GCCGGC 1 cut(s) 765
Kzo9I GATC 6 cut(s) 32, 184, 237, 345, 478, 823
Lsp1109I GCAGC 6 cut(s) 67, 485, 497, 602, 744, 747
LweI GCATC 3 cut(s) 26, 343, 497
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 371, 531, 716
MalI GATC 6 cut(s) 34, 186, 239, 347, 480, 825
MboI GATC 6 cut(s) 32, 184, 237, 345, 478, 823
MboII GAAGA 2 cut(s) 404, 425
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 5 cut(s) 255, 306, 387, 808, 878
MlyI GAGTC 2 cut(s) 638, 785
MroNI GCCGGC 1 cut(s) 763
MseI TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 3 cut(s) 559, 752, 764
MspR9I CCNGG 2 cut(s) 190, 752
Mva1269I GAATGC 2 cut(s) 852, 889
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 2 cut(s) 297, 651
MwoI GCNNNNNNNGC 7 cut(s) 115, 140, 482, 520, 689, 769, 773
NaeI GCCGGC 1 cut(s) 765
NciI CCSGG 1 cut(s) 752
NcoI CCATGG 1 cut(s) 544
NdeII GATC 6 cut(s) 32, 184, 237, 345, 478, 823
NgoMIV GCCGGC 1 cut(s) 763
NlaIII CATG 7 cut(s) 118, 442, 485, 548, 602, 620, 851
NlaIV GGNNCC 1 cut(s) 771
NmuCI GTSAC 3 cut(s) 371, 531, 716
NruI TCGCGA 1 cut(s) 651
NspI RCATGY 1 cut(s) 118
PasI CCCWGGG 1 cut(s) 189
PctI GAATGC 2 cut(s) 852, 889
PdiI GCCGGC 1 cut(s) 765
PfeI GAWTC 3 cut(s) 634, 781, 844
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 6 cut(s) 57, 475, 487, 592, 759, 762
PleI GAGTC 2 cut(s) 638, 785
PpsI GAGTC 2 cut(s) 638, 785
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 771
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 237
RruI TCGCGA 1 cut(s) 651
RsaI GTAC 4 cut(s) 294, 302, 730, 735
RsaNI GTAC 4 cut(s) 293, 301, 729, 734
SaqAI TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
SatI GCNGC 6 cut(s) 56, 474, 486, 591, 758, 761
Sau3AI GATC 6 cut(s) 32, 184, 237, 345, 478, 823
SchI GAGTC 2 cut(s) 638, 785
ScrFI CCNGG 2 cut(s) 190, 752
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 3 cut(s) 26, 343, 497
SfcI CTRYAG 3 cut(s) 333, 471, 738
SmlI CTYRAG 2 cut(s) 28, 273
SmoI CTYRAG 2 cut(s) 28, 273
Sse9I AATT 5 cut(s) 255, 306, 387, 808, 878
SsiI CCGC 3 cut(s) 107, 118, 767
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 188, 750
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 4 cut(s) 50, 330, 421, 733
TaqI TCGA 3 cut(s) 99, 425, 582
TasI AATT 5 cut(s) 255, 306, 387, 808, 878
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 3 cut(s) 634, 781, 844
Tru1I TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
Tru9I TTAA 6 cut(s) 29, 146, 254, 528, 612, 881
TscAI CASTG 4 cut(s) 294, 475, 540, 801
TseFI GTSAC 3 cut(s) 371, 531, 716
TseI GCWGC 6 cut(s) 55, 473, 485, 590, 757, 760
Tsp45I GTSAC 3 cut(s) 371, 531, 716
TspDTI ATGAA 3 cut(s) 17, 626, 836
TspGWI ACGGA 2 cut(s) 53, 128
TspRI CASTG 4 cut(s) 294, 475, 540, 801
Van91I CCANNNNNTGG 1 cut(s) 545
Vha464I CTTAAG 1 cut(s) 28
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.