Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Forward (+)

13553560 .. 13555028

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAAGATGAAAGGCATAGACATCTTCTGTGCATCCCAAGCTTCAACAGCCATATGCATGAGCATGGAGAATCAAGCATCCTCCTCTTCCTCCTCCGTCATTCAACTCGGTGGCCGAGCCCTCGACCGCCACAACCCCATCATCCAAGATGCAAGAAGAAGCACAAGCTCCAGAACCCTTCCCATTGCTCCATGCTCTTCCCAATCTCCCATCAACCCCAAAGCCTACCACCAACTCCCAAAGAGCAAGAAAAAAAACTCCTCCTCATCACCAAGACCAAGCACTGATCATAAAAACAAGAAAAAGAGCTCCGCAAAAGAAAACGACCAGAAGAGGAAGAGTAGTAATCTTTTACAAGGAAAGTTGGATGAAAATGTGAAGAAGTTTTCTTCTGTTCTAAGTGAGAGTGTTGTTGTGAGGAAGAGCTCTGCAAACCCTACTGATCTCATCACTCCTCCTGGCTCCACCAGATACCTTTTGAGTGATACTGTGATCTTTGATGGGTTATCCGATTACGATCCGGTTTCGGCATTGGTTCCAGTTGGGCAGAAAAAGAGCCAAAATGCAGTAAAAATACTCAAAGAAAATGAATCTACTACTTCTCCAATTAGCTCTACCTCATCTCTGACAAAAGACTCACAACCACCGCCGCTGCCGTCGCCCCCTTCCAACCAGGTTGTTGTATTGATGGTGTCTCTCCACTGCAAAGGGTGTGTAGGAAAACTGAGAAAACATCTATCCAGAATGGAAGGGGTGACATCATTCAACATAGACTTTGCAGCAAAGAAGGTGACAGTCACTGGAGATGTAACCCCATTGAGTGTCCTTGCCAGTGTCTCAAAGGTGAAGAACGCTCAGTTTTGGCCTACTGTGTCATCAGCATCACCTGCCTCTCCAACTTGTCCTACCAAACTAGAGGCCAAGAAAGAATTTAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

314

Amino Acids

33.64

Weight (kDa)

9.88

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	229 - 275	5.4e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
Acc36I	ACCTGC	1 cut(s)	895
AciI	CCGC	4 cut(s)	127, 312, 647, 650
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	929
AgsI	TTSAA	3 cut(s)	45, 104, 766
AjnI	CCWGG	2 cut(s)	457, 672
AluBI	AGCT	5 cut(s)	41, 168, 309, 426, 612
AluI	AGCT	5 cut(s)	41, 168, 309, 426, 612
Alw21I	GWGCWC	2 cut(s)	311, 428
Alw26I	GTCTC	2 cut(s)	699, 841
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	3 cut(s)	112, 863, 918
ApeKI	GCWGC	2 cut(s)	652, 779
ApoI	RAATTY	1 cut(s)	929
AsuHPI	GGTGA	5 cut(s)	261, 766, 802, 856, 876
BanII	GRGCYC	3 cut(s)	121, 311, 428
Bbv12I	GWGCWC	2 cut(s)	311, 428
BbvI	GCAGC	2 cut(s)	639, 791
BccI	CCATC	4 cut(s)	146, 218, 494, 682
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	2 cut(s)	459, 674
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	699, 841
BfaI	CTAG	1 cut(s)	914
BfuAI	ACCTGC	1 cut(s)	895
BisI	GCNGC	3 cut(s)	650, 653, 780
BlsI	GCNGC	3 cut(s)	651, 654, 781
Bme1390I	CCNGG	2 cut(s)	459, 674
BmiI	GGNNCC	2 cut(s)	463, 537
BmrFI	CCNGG	2 cut(s)	459, 674
BmsI	GCATC	4 cut(s)	41, 86, 139, 890
BpmI	CTGGAG	2 cut(s)	154, 822
BsaBI	GATNNNNATC	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bse1I	ACTGG	3 cut(s)	539, 805, 831
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	459, 674
BseGI	GGATG	4 cut(s)	32, 77, 141, 373
BseJI	GATNNNNATC	1 cut(s)	516
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	716, 869
BseNI	ACTGG	3 cut(s)	539, 805, 831
BseRI	GAGGAG	5 cut(s)	73, 82, 250, 253, 444
BseXI	GCAGC	2 cut(s)	639, 791
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	114, 865, 920
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	311, 428
BsiSI	CCGG	1 cut(s)	521
BsmAI	GTCTC	2 cut(s)	699, 841
BsnI	GGCC	3 cut(s)	114, 865, 920
Bsp1286I	GDGCHC	3 cut(s)	121, 311, 428
Bsp143I	GATC	4 cut(s)	286, 442, 492, 517
BspACI	CCGC	4 cut(s)	127, 312, 647, 650
BspANI	GGCC	3 cut(s)	114, 865, 920
BspCNI	CTCAG	2 cut(s)	717, 868
BspLI	GGNNCC	2 cut(s)	463, 537
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	2 cut(s)	202, 416
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	3 cut(s)	539, 805, 831
BssMI	GATC	4 cut(s)	286, 442, 492, 517
Bst2UI	CCWGG	2 cut(s)	459, 674
Bst4CI	ACNGT	3 cut(s)	490, 796, 871
Bst6I	CTCTTC	5 cut(s)	91, 202, 326, 332, 416
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstDEI	CTNAG	3 cut(s)	398, 725, 855
BstF5I	GGATG	4 cut(s)	32, 77, 141, 373
BstKTI	GATC	4 cut(s)	289, 445, 495, 520
BstMAI	GTCTC	2 cut(s)	699, 841
BstMBI	GATC	4 cut(s)	286, 442, 492, 517
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 658, 887
BstNI	CCWGG	2 cut(s)	459, 674
BstSCI	CCNGG	2 cut(s)	457, 672
BstV1I	GCAGC	2 cut(s)	639, 791
BsuRI	GGCC	3 cut(s)	114, 865, 920
BtsCI	GGATG	4 cut(s)	32, 77, 141, 373
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	4 cut(s)	282, 700, 798, 838
BveI	ACCTGC	1 cut(s)	895
CaiI	CAGNNNCTG	1 cut(s)	800
CsiI	ACCWGGT	1 cut(s)	672
CviAII	CATG	3 cut(s)	58, 64, 192
DdeI	CTNAG	3 cut(s)	398, 725, 855
DpnI	GATC	4 cut(s)	288, 444, 494, 519
DpnII	GATC	4 cut(s)	286, 442, 492, 517
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	5 cut(s)	91, 202, 326, 332, 416
EarI	CTCTTC	5 cut(s)	91, 202, 326, 332, 416
Ecl136II	GAGCTC	2 cut(s)	309, 426
Eco24I	GRGCYC	3 cut(s)	121, 311, 428
Eco53kI	GAGCTC	2 cut(s)	309, 426
EcoICRI	GAGCTC	2 cut(s)	309, 426
EcoRII	CCWGG	2 cut(s)	457, 672
EcoT22I	ATGCAT	1 cut(s)	59
EcoT38I	GRGCYC	3 cut(s)	121, 311, 428
FaeI	CATG	3 cut(s)	61, 67, 195
FaiI	YATR	8 cut(s)	17, 53, 55, 59, 65, 193, 291, 770
FatI	CATG	3 cut(s)	57, 63, 191
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	650, 653, 780
FokI	GGATG	4 cut(s)	19, 64, 128, 380
FriOI	GRGCYC	3 cut(s)	121, 311, 428
Fsp4HI	GCNGC	3 cut(s)	650, 653, 780
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	3 cut(s)	650, 653, 780
GsuI	CTGGAG	2 cut(s)	154, 822
HaeIII	GGCC	3 cut(s)	114, 865, 920
HapII	CCGG	1 cut(s)	521
Hin1II	CATG	3 cut(s)	61, 67, 195
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	3 cut(s)	70, 590, 635
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	5 cut(s)	261, 766, 802, 856, 876
Hpy188I	TCNGA	2 cut(s)	511, 627
Hpy188III	TCNNGA	2 cut(s)	171, 741
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	4 cut(s)	188, 675, 743, 781
HpyCH4III	ACNGT	3 cut(s)	490, 796, 871
HpyCH4V	TGCA	7 cut(s)	32, 57, 152, 431, 566, 705, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 658, 887
HpyF3I	CTNAG	3 cut(s)	398, 725, 855
Hsp92II	CATG	3 cut(s)	61, 67, 195
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	286, 442, 492, 517
LguI	GCTCTTC	2 cut(s)	202, 416
LmnI	GCTCC	4 cut(s)	173, 193, 314, 467
Lsp1109I	GCAGC	2 cut(s)	639, 791
LweI	GCATC	4 cut(s)	41, 86, 139, 890
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	1 cut(s)	914
MaeIII	GTNAC	4 cut(s)	754, 790, 796, 808
MalI	GATC	4 cut(s)	288, 444, 494, 519
MboI	GATC	4 cut(s)	286, 442, 492, 517
MhlI	GDGCHC	3 cut(s)	121, 311, 428
MluCI	AATT	2 cut(s)	606, 929
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	3 cut(s)	345, 693, 920
Mph1103I	ATGCAT	1 cut(s)	59
MseI	TTAA	1 cut(s)	933
MslI	CAYNNNNRTG	2 cut(s)	56, 62
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	2 cut(s)	459, 674
MvaI	CCWGG	2 cut(s)	459, 674
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 658, 887
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	4 cut(s)	286, 442, 492, 517
NlaIII	CATG	3 cut(s)	61, 67, 195
NlaIV	GGNNCC	2 cut(s)	463, 537
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	3 cut(s)	754, 790, 796
NsiI	ATGCAT	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	895
PciSI	GCTCTTC	2 cut(s)	202, 416
PfeI	GAWTC	2 cut(s)	70, 590
PkrI	GCNGC	3 cut(s)	651, 654, 781
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
Psp124BI	GAGCTC	2 cut(s)	311, 428
Psp6I	CCWGG	2 cut(s)	457, 672
PspGI	CCWGG	2 cut(s)	457, 672
PspN4I	GGNNCC	2 cut(s)	463, 537
PstNI	CAGNNNCTG	1 cut(s)	800
RseI	CAYNNNNRTG	2 cut(s)	56, 62
SacI	GAGCTC	2 cut(s)	311, 428
SapI	GCTCTTC	2 cut(s)	202, 416
SaqAI	TTAA	1 cut(s)	933
SatI	GCNGC	3 cut(s)	650, 653, 780
Sau3AI	GATC	4 cut(s)	286, 442, 492, 517
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	459, 674
SduI	GDGCHC	3 cut(s)	121, 311, 428
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	4 cut(s)	41, 86, 139, 890
SmiMI	CAYNNNNRTG	2 cut(s)	56, 62
Sse9I	AATT	2 cut(s)	606, 929
SsiI	CCGC	4 cut(s)	127, 312, 647, 650
SspMI	CTAG	1 cut(s)	914
SstI	GAGCTC	2 cut(s)	311, 428
StyD4I	CCNGG	2 cut(s)	457, 672
TaaI	ACNGT	3 cut(s)	490, 796, 871
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	606, 929
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	70, 590
Tru1I	TTAA	1 cut(s)	933
Tru9I	TTAA	1 cut(s)	933
TscAI	CASTG	4 cut(s)	289, 707, 805, 838
TseFI	GTSAC	3 cut(s)	754, 790, 796
TseI	GCWGC	2 cut(s)	652, 779
Tsp45I	GTSAC	3 cut(s)	754, 790, 796
TspDTI	ATGAA	4 cut(s)	17, 23, 384, 603
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	4 cut(s)	289, 707, 805, 838
XapI	RAATTY	1 cut(s)	929
XspI	CTAG	1 cut(s)	914
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.