Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013088

Physical Location & Seq

Genomic Coordinates Forward (+)

16877604 .. 16878648

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGCGTTCAGGAGACGAAGGACTTGCTTCTGATCGATCGGAGCTAGATCAGACTTTCATGGAGACGAAGAGAAACAAGCTTCTGTGGGAAGTGATTTCTACGAAGATGAAGGAAAAAGGTCACCATCGCAGCGCCGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACTCGTTACAAGGGTTTTGAGACAATGGAGCCGGAAGCTATGAGGCAGCAATTCCCGTTTTACAACGAGCTACAAGAGATTTTCGCTGCACGGATGCAGAGAATGCTGTGGGCAGAAGAGAGTGGAGCTGCAAGCGGGTCGAAGAAGAAAACGCTTTCTTCAGACGACGAGGAAGATAACGAGGATAGCGAGGCAGAGAATAAGGGAAGCACGGGGAAGAACAAGAAGAAGAAGATGAAGATGAGCAATATAGGAAGCAGCAGCGCAAGCGGAAATAATGTAAGGGAGATATTGGAAGAGTTCATGAAGCAACAAATGCAAATGGAGATGCAATGGAGAGAGGAGTTTCAAGCGAGGGAGAATGAGAGGCGGTTGCAGGAGATGGAGTGGAGGCAGAAGATGGAAGCATTAGAGAACGAGAGGATAATGATGGAGACGAGATGGAGGGAGAGGGAGGAGCAAAGGAGGATGAGGGAGGAGGCTAGGGCTGAGAAAAGGGATGCTCTTATTACTGCTTTGCTAAACAAGCTTAGAAGAGAGGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

240

Amino Acids

28.65

Weight (kDa)

6.33

Isoelectric Point (pI)

70.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	13 - 84	2.3e-16	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38250
fragaria_vesca	FvH4_6g11330 FvH4_6g11330
malus_domestica	MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica	Prupe.6G278600_v2.0.a1
pyrus_communis	pycom04g13960 pycom12g15980
rosa_chinensis	RchiOBHm_Chr3g0462911
rosa_laevigata	RLG00000024825
rosa_multiflora	Rmu_sc0000766.1_g000017
rosa_roxburghii	Rroxscaffold_6G00417110
rosa_rugosa	Rorug03G0059700
rosa_samantha	Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana	Rw3G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	306, 441, 541
AcuI	CTGAAG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	521
AluBI	AGCT	6 cut(s)	46, 82, 209, 241, 299, 700
AluI	AGCT	6 cut(s)	46, 82, 209, 241, 299, 700
Alw26I	GTCTC	4 cut(s)	9, 59, 185, 599
ApeKI	GCWGC	6 cut(s)	132, 217, 257, 299, 429, 432
AspLEI	GCGC	2 cut(s)	137, 437
AsuHPI	GGTGA	1 cut(s)	116
BbvI	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
BccI	CCATC	5 cut(s)	135, 547, 565, 595, 606
BcgI	CGANNNNNNTGC	4 cut(s)	8, 42, 291, 325
BcoDI	GTCTC	4 cut(s)	9, 59, 185, 599
BfaI	CTAG	2 cut(s)	47, 654
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
BlsI	GCNGC	6 cut(s)	134, 219, 259, 301, 431, 434
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	3 cut(s)	255, 489, 661
Bsa29I	ATCGAT	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bse3DI	GCAATG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	37
BseGI	GGATG	3 cut(s)	270, 645, 676
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	1 cut(s)	651
BseRI	GAGGAG	3 cut(s)	527, 641, 662
BseXI	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
BsgI	GTGCAG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	203
BsmAI	GTCTC	4 cut(s)	9, 59, 185, 599
BsmBI	CGTCTC	3 cut(s)	9, 59, 599
BsmI	GAATGC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	34, 38, 49
BspACI	CCGC	3 cut(s)	306, 441, 541
BspCNI	CTCAG	1 cut(s)	652
BspDI	ATCGAT	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	509
BssMI	GATC	3 cut(s)	34, 38, 49
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	4 cut(s)	65, 282, 462, 700
BstAPI	GCANNNNNTGC	2 cut(s)	274, 487
BstC8I	GCNNGC	2 cut(s)	304, 439
BstDEI	CTNAG	2 cut(s)	660, 701
BstEII	GGTNACC	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	270, 645, 676
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 437
BstKTI	GATC	3 cut(s)	37, 41, 52
BstMAI	GTCTC	4 cut(s)	9, 59, 185, 599
BstMBI	GATC	3 cut(s)	34, 38, 49
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 438, 487, 697
BstPI	GGTNACC	1 cut(s)	122
BstV1I	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
Bsu15I	ATCGAT	1 cut(s)	37
BsuTUI	ATCGAT	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	270, 645, 676
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	304, 439
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	2 cut(s)	137, 437
ClaI	ATCGAT	1 cut(s)	37
CviAII	CATG	2 cut(s)	61, 475
CviJI	RGCY	9 cut(s)	46, 82, 202, 209, 241, 299, 653, 659, 700
CviKI_1	RGCY	9 cut(s)	46, 82, 202, 209, 241, 299, 653, 659, 700
DdeI	CTNAG	2 cut(s)	660, 701
DpnI	GATC	3 cut(s)	36, 40, 51
DpnII	GATC	3 cut(s)	34, 38, 49
Eam1104I	CTCTTC	4 cut(s)	65, 282, 462, 700
EarI	CTCTTC	4 cut(s)	65, 282, 462, 700
Eco57I	CTGAAG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	122
Esp3I	CGTCTC	3 cut(s)	9, 59, 599
FaeI	CATG	2 cut(s)	64, 478
FaiI	YATR	5 cut(s)	62, 212, 422, 476, 716
FatI	CATG	2 cut(s)	60, 474
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
FokI	GGATG	3 cut(s)	277, 652, 683
Fsp4HI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
FspBI	CTAG	2 cut(s)	47, 654
GlaI	GCGC	2 cut(s)	136, 436
GluI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	2 cut(s)	137, 437
Hin1II	CATG	2 cut(s)	64, 478
Hin6I	GCGC	2 cut(s)	135, 435
HinP1I	GCGC	2 cut(s)	135, 435
HindIII	AAGCTT	2 cut(s)	80, 698
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	4 cut(s)	34, 43, 54, 334
Hpy188III	TCNNGA	2 cut(s)	12, 475
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	14, 106
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	8 cut(s)	147, 153, 260, 268, 302, 490, 502, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 438, 487, 697
HpyF3I	CTNAG	2 cut(s)	660, 701
Hsp92II	CATG	2 cut(s)	64, 478
HspAI	GCGC	2 cut(s)	135, 435
Kzo9I	GATC	3 cut(s)	34, 38, 49
LmnI	GCTCC	5 cut(s)	4, 43, 199, 296, 628
LpnPI	CCDG	2 cut(s)	216, 533
Lsp1109I	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
LweI	GCATC	3 cut(s)	255, 489, 661
MaeI	CTAG	2 cut(s)	47, 654
MaeIII	GTNAC	3 cut(s)	122, 169, 176
MalI	GATC	3 cut(s)	36, 40, 51
MboI	GATC	3 cut(s)	34, 38, 49
MluCI	AATT	1 cut(s)	221
MspI	CCGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	274, 438, 487, 697
NdeII	GATC	3 cut(s)	34, 38, 49
NlaIII	CATG	2 cut(s)	64, 478
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	122
PagI	TCATGA	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	279
PkrI	GCNGC	6 cut(s)	134, 219, 259, 301, 431, 434
Ple19I	CGATCG	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	41
SatI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
Sau3AI	GATC	3 cut(s)	34, 38, 49
SetI	ASST	8 cut(s)	48, 84, 124, 168, 211, 243, 301, 702
SfaNI	GCATC	3 cut(s)	255, 489, 661
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	3 cut(s)	306, 441, 541
SspMI	CTAG	2 cut(s)	47, 654
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	37, 311
TasI	AATT	1 cut(s)	221
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	6 cut(s)	132, 217, 257, 299, 429, 432
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	5 cut(s)	49, 125, 422, 463, 491
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	149
XspI	CTAG	2 cut(s)	47, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.