pycom04g14090

Phosphoinositide phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016009
Physical Location & Seq
Reverse (-)
17004396 .. 17007827
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1188 bp
ATGGTGTTCCTTAACCTACATTTAAGCTTCCAGACTGCACAGCTAAAGCTAAAAGGCTCACCTTCTACACTGACAATAGTCTCAAGGAGGTGTACCAGACGTCTAGGGACAAGAATGTGGAGAAGAGGAGCGAACCTTGATGGAGATGTAGCTAATTTTATTGAAACTGAGCAATTGGTGGAGATTGAAGGTTTCCAGTCCGCATTATTGCAGATTCGAGGTTCAATTCCGCTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACGACTTAGAATTATTGATCATGAGCAGACGTCAAATGTTGTGGAGCGCCATTTTTTTGATCTTTCCCAAAGATATGGAGAGACAATGGCAGTAGACCTAACTGATAAACATGGTGATGAAGGTCAACTAAGCACGGCATTTTCTGCTGAAATGAAAAATCTACCAAACGTGAGATACGTTTCATTTGACTTTCATCATGTATGTGGTAACTCAAACTTTGAAAACGTAAAGTTTCTGTATGAGCAGATCTCAGAGCAATTTGAGAAGCAAGGATACTTCCTCGTAGATGCGAAAGGCAACATACTGGAGGAGCAGAAAGGAATTGTCAGAACAAACTGCATTGATTGCCTTGATAGAACAAATGTTACACAGAGTTACTTGGCCCAGAAGTCTCTAGATGCACAGTTGCAAAGAACTGGAGTGCTGGATTCTTCTGAAAGCATTTCCATGTTTGCTGAAGATTATCAAACATTTAGAGCATTGTGGGCTGAGCAAGGCGACGAGATAAGCCTTGAGTATGCTGGCACTTATGCCCTGAAAGGGGACCTGGTTAGATATGGGAAGCAGACATTTGGAGGAATAATCAAAGATGGGATGAGTGCTCTTTCAAGATATTATTTGAATAACTTTCAGGATGGCATTCGGCAGGATGCTATGGATCTTATCAGTGGCCACTATACAGTTAGAAGGGATACTTCACCATTCCGGGCTGAATCTTTTTCTTTTCTACCGGTGGCATCTGCTTTGCTAATTGGAGGGTTGACACTGACATCCGTCACACTTCAGCAAGCTGGTCGAAATGCCCAGCAATATATGTCTTCTGTTCTTTTGGCTGGAGTGACTGCTGGAGTAGCGGCAGTGGTGAAAGCTAACGGAAGGCAATTCTGTTCGAGACCTCGCTTGTGCAGACTTGTATAA

Protein Analysis

396

Amino Acids

44.48

Weight (kDa)

6.41

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syja_N PF02383 14 - 158 1.5e-45 SacI homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51830
fragaria_vesca FvH4_6g11250
malus_domestica MD04G1159300.v1.1
prunus_persica Prupe.6G279500_v2.0.a1
pyrus_communis pycom04g14090
rosa_chinensis RchiOBHm_Chr3g0462771
rosa_laevigata RLG00000024834
rosa_roxburghii Rroxscaffold_6G00417220
rosa_rugosa Rorug03G0059100 Rorug03G0059100
rosa_samantha Rh3AG117100 Rh3BG120900 Rh3CG123800 Rh3DG122500
rosa_wichuraiana Rw3G009920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 103, 302
AccI GTMKAC 1 cut(s) 363
AciI CCGC 3 cut(s) 201, 230, 1124
AclWI GGATC 1 cut(s) 936
AcoI YGGCCR 1 cut(s) 940
AcuI CTGAAG 2 cut(s) 747, 1037
AcyI GRCGYC 2 cut(s) 100, 299
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 810, 811
AgeI ACCGGT 1 cut(s) 1000
AgsI TTSAA 6 cut(s) 164, 188, 225, 491, 879, 892
AjnI CCWGG 1 cut(s) 816
AluBI AGCT 7 cut(s) 27, 43, 49, 152, 261, 1061, 1139
AluI AGCT 7 cut(s) 27, 43, 49, 152, 261, 1061, 1139
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 4 cut(s) 85, 344, 666, 1156
AlwI GGATC 1 cut(s) 936
AoxI GGCC 2 cut(s) 651, 940
AsiGI ACCGGT 1 cut(s) 1000
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 652, 814
AsuC2I CCSGG 1 cut(s) 977
AsuHPI GGTGA 4 cut(s) 51, 395, 960, 1144
AvaII GGWCC 1 cut(s) 814
BalI TGGCCA 1 cut(s) 942
BarI GAAGNNNNNNTAC 2 cut(s) 527, 559
BbsI GAAGAC 1 cut(s) 1080
Bbv12I GWGCWC 1 cut(s) 874
BccI CCATC 3 cut(s) 134, 854, 899
BceAI ACGGC 1 cut(s) 420
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciT130I CCWGG 1 cut(s) 818
BciVI GTATCC 2 cut(s) 536, 955
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 977
BcoDI GTCTC 4 cut(s) 85, 344, 666, 1156
BfaI CTAG 2 cut(s) 104, 665
BfoI RGCGCY 1 cut(s) 319
BfuI GTATCC 2 cut(s) 536, 955
BglII AGATCT 1 cut(s) 516
BisI GCNGC 1 cut(s) 1125
BlpI GCTNAGC 1 cut(s) 759
BlsI GCNGC 1 cut(s) 1126
Bme1390I CCNGG 2 cut(s) 818, 977
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 652, 814
BmiI GGNNCC 1 cut(s) 815
BmrFI CCNGG 2 cut(s) 818, 977
BmsI GCATC 4 cut(s) 547, 658, 910, 1016
BoxI GACNNNNGTC 2 cut(s) 77, 1043
BpiI GAAGAC 1 cut(s) 1080
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 4 cut(s) 596, 708, 1125, 1137
Bpu1102I GCTNAGC 1 cut(s) 759
BpuEI CTTGAG 3 cut(s) 67, 277, 803
BpuMI CCSGG 1 cut(s) 977
BsaHI GRCGYC 2 cut(s) 100, 299
BsaI GGTCTC 1 cut(s) 1156
BsaWI WCCGGW 1 cut(s) 1000
Bsc4I CCNNNNNNNGG 2 cut(s) 810, 811
Bse118I RCCGGY 1 cut(s) 1000
Bse1I ACTGG 3 cut(s) 196, 579, 691
BseBI CCWGG 1 cut(s) 818
BseGI GGATG 4 cut(s) 870, 910, 925, 1040
BseLI CCNNNNNNNGG 2 cut(s) 810, 811
BseMII CTCAG 3 cut(s) 159, 534, 750
BseNI ACTGG 3 cut(s) 196, 579, 691
BseRI GAGGAG 2 cut(s) 141, 593
BseYI CCCAGC 1 cut(s) 1074
BsgI GTGCAG 1 cut(s) 21
BshFI GGCC 2 cut(s) 653, 942
BshTI ACCGGT 1 cut(s) 1000
BsiHKAI GWGCWC 1 cut(s) 874
BsiSI CCGG 2 cut(s) 976, 1001
BslFI GGGAC 2 cut(s) 121, 827
BslI CCNNNNNNNGG 2 cut(s) 810, 811
BsmAI GTCTC 4 cut(s) 85, 344, 666, 1156
BsmFI GGGAC 2 cut(s) 121, 827
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 2 cut(s) 653, 942
Bso31I GGTCTC 1 cut(s) 1156
Bsp1286I GDGCHC 1 cut(s) 874
Bsp143I GATC 4 cut(s) 286, 328, 516, 928
Bsp1720I GCTNAGC 1 cut(s) 759
BspACI CCGC 3 cut(s) 201, 230, 1124
BspANI GGCC 2 cut(s) 653, 942
BspCNI CTCAG 3 cut(s) 160, 533, 751
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 815
BspPI GGATC 1 cut(s) 936
BspTNI GGTCTC 1 cut(s) 1156
BsrFI RCCGGY 1 cut(s) 1000
BsrI ACTGG 3 cut(s) 196, 579, 691
BssAI RCCGGY 1 cut(s) 1000
BssMI GATC 4 cut(s) 286, 328, 516, 928
BssNI GRCGYC 2 cut(s) 100, 299
Bst2UI CCWGG 1 cut(s) 818
Bst4CI ACNGT 2 cut(s) 675, 952
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 2 cut(s) 100, 299
BstAPI GCANNNNNTGC 2 cut(s) 413, 615
BstC8I GCNNGC 2 cut(s) 793, 1059
BstDEI CTNAG 5 cut(s) 168, 275, 398, 520, 759
BstF5I GGATG 4 cut(s) 870, 910, 925, 1040
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 4 cut(s) 289, 331, 519, 931
BstMAI GTCTC 4 cut(s) 85, 344, 666, 1156
BstMBI GATC 4 cut(s) 286, 328, 516, 928
BstMWI GCNNNNNNNGC 4 cut(s) 413, 615, 755, 1121
BstNI CCWGG 1 cut(s) 818
BstPAI GACNNNNGTC 2 cut(s) 77, 1043
BstSCI CCNGG 2 cut(s) 816, 975
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 2 cut(s) 516, 928
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 2 cut(s) 516, 928
BsuI GTATCC 2 cut(s) 536, 955
BsuRI GGCC 2 cut(s) 653, 942
BtsCI GGATG 4 cut(s) 870, 910, 925, 1040
BtsI GCAGTG 1 cut(s) 1134
BtsIMutI CAGTG 4 cut(s) 68, 943, 1034, 1134
Cac8I GCNNGC 2 cut(s) 793, 1059
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 1000
Cfr13I GGNCC 2 cut(s) 652, 814
CsiI ACCWGGT 1 cut(s) 816
Csp6I GTAC 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 1000
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 4 cut(s) 290, 380, 467, 718
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 5 cut(s) 168, 275, 398, 520, 759
DpnI GATC 4 cut(s) 288, 330, 518, 930
DpnII GATC 4 cut(s) 286, 328, 516, 928
EaeI YGGCCR 1 cut(s) 940
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 1156
Eco47I GGWCC 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 747, 1037
EcoO109I RGGNCCY 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 816
FaeI CATG 4 cut(s) 293, 383, 470, 721
FalI AAGNNNNNCTT 2 cut(s) 949, 981
FaqI GGGAC 2 cut(s) 121, 827
FatI CATG 4 cut(s) 289, 379, 466, 717
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 1125
FokI GGATG 4 cut(s) 877, 917, 932, 1027
Fsp4HI GCNGC 1 cut(s) 1125
FspBI CTAG 2 cut(s) 104, 665
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 1125
GsaI CCCAGC 1 cut(s) 1078
GsuI CTGGAG 4 cut(s) 596, 708, 1125, 1137
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 653, 942
HapII CCGG 2 cut(s) 976, 1001
HhaI GCGC 1 cut(s) 318
Hin1I GRCGYC 2 cut(s) 100, 299
Hin1II CATG 4 cut(s) 293, 383, 470, 721
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 3 cut(s) 253, 395, 1032
HindII GTYRAC 3 cut(s) 253, 395, 1032
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 3 cut(s) 214, 698, 983
HpaII CCGG 2 cut(s) 976, 1001
HphI GGTGA 4 cut(s) 51, 395, 960, 1144
Hpy166II GTNNAC 5 cut(s) 93, 253, 364, 395, 1032
Hpy188I TCNGA 3 cut(s) 523, 599, 706
Hpy188III TCNNGA 6 cut(s) 31, 290, 665, 879, 902, 1161
Hpy8I GTNNAC 5 cut(s) 93, 253, 364, 395, 1032
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 5 cut(s) 72, 182, 383, 951, 1140
HpyCH4III ACNGT 2 cut(s) 675, 952
HpyCH4IV ACGT 5 cut(s) 100, 299, 438, 447, 495
HpyCH4V TGCA 6 cut(s) 38, 211, 609, 671, 679, 1176
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 615, 755, 1121
HpyF3I CTNAG 5 cut(s) 168, 275, 398, 520, 759
HpySE526I ACGT 5 cut(s) 100, 299, 438, 447, 495
Hsp92I GRCGYC 2 cut(s) 100, 299
Hsp92II CATG 4 cut(s) 293, 383, 470, 721
HspAI GCGC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 4 cut(s) 286, 328, 516, 928
LmnI GCTCC 4 cut(s) 128, 241, 313, 580
LweI GCATC 4 cut(s) 547, 658, 910, 1016
MabI ACCWGGT 1 cut(s) 816
MaeI CTAG 2 cut(s) 104, 665
MaeII ACGT 5 cut(s) 100, 299, 438, 447, 495
MaeIII GTNAC 5 cut(s) 476, 634, 644, 1045, 1108
MalI GATC 4 cut(s) 288, 330, 518, 930
MboI GATC 4 cut(s) 286, 328, 516, 928
MboII GAAGA 4 cut(s) 135, 693, 740, 1080
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 2 cut(s) 516, 928
MhlI GDGCHC 1 cut(s) 874
MlsI TGGCCA 1 cut(s) 942
MluCI AATT 9 cut(s) 154, 173, 225, 246, 279, 527, 591, 1020, 1151
MluNI TGGCCA 1 cut(s) 942
MnlI CCTC 8 cut(s) 81, 119, 212, 560, 571, 839, 1019, 1176
Mox20I TGGCCA 1 cut(s) 942
MscI TGGCCA 1 cut(s) 942
MseI TTAA 2 cut(s) 12, 23
MslI CAYNNNNRTG 3 cut(s) 384, 471, 716
Msp20I TGGCCA 1 cut(s) 942
MspI CCGG 2 cut(s) 976, 1001
MspR9I CCNGG 2 cut(s) 818, 977
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 909
MvaI CCWGG 1 cut(s) 818
MwoI GCNNNNNNNGC 4 cut(s) 413, 615, 755, 1121
NciI CCSGG 1 cut(s) 977
NdeII GATC 4 cut(s) 286, 328, 516, 928
NlaIII CATG 4 cut(s) 293, 383, 470, 721
NlaIV GGNNCC 1 cut(s) 815
NmuCI GTSAC 2 cut(s) 1045, 1108
PagI TCATGA 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PctI GAATGC 1 cut(s) 909
PfeI GAWTC 3 cut(s) 214, 698, 983
PinAI ACCGGT 1 cut(s) 1000
PkrI GCNGC 1 cut(s) 1126
PpuMI RGGWCCY 1 cut(s) 814
PshAI GACNNNNGTC 2 cut(s) 77, 1043
Psp5II RGGWCCY 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 816
PspFI CCCAGC 1 cut(s) 1074
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 1 cut(s) 815
PspPI GGNCC 2 cut(s) 652, 814
PspPPI RGGWCCY 1 cut(s) 814
PsrI GAACNNNNNNTAC 2 cut(s) 619, 651
PsuI RGATCY 2 cut(s) 516, 928
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 3 cut(s) 384, 471, 716
SaqAI TTAA 2 cut(s) 12, 23
SatI GCNGC 1 cut(s) 1125
Sau3AI GATC 4 cut(s) 286, 328, 516, 928
Sau96I GGNCC 2 cut(s) 652, 814
ScrFI CCNGG 2 cut(s) 818, 977
SduI GDGCHC 1 cut(s) 874
SexAI ACCWGGT 1 cut(s) 816
SfaNI GCATC 4 cut(s) 547, 658, 910, 1016
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 3 cut(s) 384, 471, 716
SmlI CTYRAG 3 cut(s) 82, 256, 782
SmoI CTYRAG 3 cut(s) 82, 256, 782
Sse9I AATT 9 cut(s) 154, 173, 225, 246, 279, 527, 591, 1020, 1151
SsiI CCGC 3 cut(s) 201, 230, 1124
SspMI CTAG 2 cut(s) 104, 665
StyD4I CCNGG 2 cut(s) 816, 975
TaaI ACNGT 2 cut(s) 675, 952
TaiI ACGT 5 cut(s) 103, 302, 441, 450, 498
TaqI TCGA 3 cut(s) 217, 1066, 1160
TasI AATT 9 cut(s) 154, 173, 225, 246, 279, 527, 591, 1020, 1151
TauI GCSGC 1 cut(s) 1127
TfiI GAWTC 3 cut(s) 214, 698, 983
Tru1I TTAA 2 cut(s) 12, 23
Tru9I TTAA 2 cut(s) 12, 23
TscAI CASTG 4 cut(s) 75, 943, 1041, 1134
TseFI GTSAC 2 cut(s) 1045, 1108
Tsp45I GTSAC 2 cut(s) 1045, 1108
TspDTI ATGAA 4 cut(s) 402, 437, 441, 452
TspGWI ACGGA 2 cut(s) 1033, 1158
TspRI CASTG 4 cut(s) 75, 943, 1041, 1134
VpaK11BI GGWCC 1 cut(s) 814
XbaI TCTAGA 1 cut(s) 664
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 2 cut(s) 104, 665
ZraI GACGTC 2 cut(s) 101, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.