Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008023

Physical Location & Seq

Genomic Coordinates Reverse (-)

1110295 .. 1114688

Gene Structure 4394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGTTAAGATACAGAATAAGGCATTATTGTCTGGCCTTGCATATTGCCTGTCGTCCTGCAGCATGATATTAGTTAACAAATTCGTCCTTTCGAGTTACAACTTTGATGCTGGAATTTCTCTGATGCTGTACCAGAACCTAGTCTCGGTTATAATCGTTTCTGTGTTGAGTTTTACCGGCATCATATCAATGGAGCCACTAACATGGAGATTGGTTAAGGTCTGGTTGCCTGTGAATGTTATATTCGTTGGGATGCTCATTACAAGCATGTTTAGCTTGAAGTACATCAATGTAGCGATGGTCACAGTCCTAAAGAATGTTACCAATGTGATAACTGCTGTTGGTGAAATGTATCTATTCCAGAAGCACCATGACAGCAGAGTATGGGCAGCACTTTTGCTAATGATAATTTCAGCAATTTCTGGAGGAGTCACTGATTTATCTTTCCATGCCGTTGGCTATGCATGGCAATTTCTGAACTGTATCTTGACTGCATCATATTCTCTTACTCTACGTAGAGTCATGGATACAGCAAAGCTGGTCACGAAATCTGGAAAGCTGAATGAGTTTTCAATGGTCTTGCTAAATAACACGCTTTCTCTACCTTTGGGGATTCTGCTTATTTTTGTTTTCAATGAAGTGGATTATCTCTTTACAACACCACTTTTGAGGTCTTCAACCTTCTGGTTGGTGATGACATTAAGTGGATTTTTGGGCCTTGCAATCAGCTTCACGTCTATGTGGTTTCTTCATCAAACAGGTGCCACCACATACAGCCTTGTTGGGTCGCTGAATAAGATCCCTCTATCTGTTGCCGGTATTCTACTTTTCAAAGTGCCGACCAGTTTAGAGAACTCTGCTAGCATTTTCTTTGGTAAGTTCTCTCCATCAAACAGGAAGAAGAATATGATGTCTTGTGGCCGGAGTATTTTTCGCGAGAGCCAAAATGCGGGAGAGAGCTTAATCCTCAACATTGTAAGTTGTGTGGATTATCTTAATGGCGTCCGAGTTTTTACTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005458 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015780 GO:0015783 GO:0015931 GO:0015932 GO:0022857 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264 GO:1901505 GO:1990570

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

TPT

Protein Analysis

341

Amino Acids

37.6

Weight (kDa)

9.51

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	10 - 286	1.6e-11	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13650 AT2G13650 AT2G13650
fragaria_vesca	FvH4_1g24340 FvH4_1g24340 FvH4_1g24340 FvH4_1g24340
malus_domestica	MD05G1016700.v1.1 MD10G1016400.v1.1
prunus_persica	Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1 Prupe.8G020100_v2.0.a1
pyrus_communis	pycom05g00930 pycom10g01070
rosa_chinensis	RchiOBHm_Chr2g0120881
rosa_laevigata	RLG00000018597
rosa_multiflora	Rmu_sc0000621.1_g000015
rosa_roxburghii	Rroxscaffold_2G00122770
rosa_rugosa	Rorug02G0232300
rosa_samantha	Rh2AG288800 Rh2BG299800 Rh2CG277800 Rh2DG313900
rosa_wichuraiana	Rw2G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	761
AccII	CGCG	1 cut(s)	936
AciI	CCGC	1 cut(s)	950
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	2 cut(s)	80, 114
AcyI	GRCGYC	1 cut(s)	1002
AfaI	GTAC	2 cut(s)	131, 284
AfiI	CCNNNNNNNGG	2 cut(s)	145, 949
AgsI	TTSAA	5 cut(s)	280, 573, 634, 678, 832
AjiI	CACGTC	1 cut(s)	735
AluBI	AGCT	5 cut(s)	276, 538, 559, 729, 960
AluI	AGCT	5 cut(s)	276, 538, 559, 729, 960
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	793
AoxI	GGCC	3 cut(s)	34, 715, 919
ApeKI	GCWGC	2 cut(s)	60, 389
ApoI	RAATTY	2 cut(s)	80, 114
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	2 cut(s)	356, 703
AsuNHI	GCTAGC	1 cut(s)	860
BanI	GGYRCC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	72, 401
BccI	CCATC	2 cut(s)	292, 895
BceAI	ACGGC	1 cut(s)	437
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	140, 861
BfmI	CTRYAG	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	61, 390
BlsI	GCNGC	2 cut(s)	62, 391
BmgBI	CACGTC	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	2 cut(s)	195, 763
BmsI	GCATC	5 cut(s)	97, 114, 189, 243, 503
BmtI	GCTAGC	1 cut(s)	864
BpiI	GAAGAC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 949
Bse118I	RCCGGY	2 cut(s)	176, 815
Bse1I	ACTGG	2 cut(s)	843, 1021
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	145, 949
BseNI	ACTGG	2 cut(s)	843, 1021
BseRI	GAGGAG	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	72, 401
Bsh1236I	CGCG	1 cut(s)	936
BshFI	GGCC	3 cut(s)	36, 717, 921
BshNI	GGYRCC	1 cut(s)	761
BsiSI	CCGG	3 cut(s)	177, 816, 922
BslI	CCNNNNNNNGG	2 cut(s)	145, 949
BsmAI	GTCTC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	36, 717, 921
Bsp143I	GATC	1 cut(s)	798
Bsp68I	TCGCGA	1 cut(s)	936
BspACI	CCGC	1 cut(s)	950
BspANI	GGCC	3 cut(s)	36, 717, 921
BspFNI	CGCG	1 cut(s)	936
BspLI	GGNNCC	2 cut(s)	195, 763
BspMAI	CTGCAG	1 cut(s)	62
BspOI	GCTAGC	1 cut(s)	864
BspPI	GGATC	1 cut(s)	793
BspT107I	GGYRCC	1 cut(s)	761
BsrFI	RCCGGY	2 cut(s)	176, 815
BsrI	ACTGG	2 cut(s)	843, 1021
BssAI	RCCGGY	2 cut(s)	176, 815
BssMI	GATC	1 cut(s)	798
BssNI	GRCGYC	1 cut(s)	1002
Bst4CI	ACNGT	2 cut(s)	307, 482
BstACI	GRCGYC	1 cut(s)	1002
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	862
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	936
BstKTI	GATC	1 cut(s)	801
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	798
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	58
BstSNI	TACGTA	1 cut(s)	515
BstUI	CGCG	1 cut(s)	936
BstV1I	GCAGC	2 cut(s)	72, 401
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	1 cut(s)	798
BstXI	CCANNNNNNTGG	2 cut(s)	204, 455
BstYI	RGATCY	1 cut(s)	798
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	36, 717, 921
BtgZI	GCGATG	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	735
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	432
BtuMI	TCGCGA	1 cut(s)	936
Cac8I	GCNNGC	1 cut(s)	862
Cfr10I	RCCGGY	2 cut(s)	176, 815
Cfr13I	GGNCC	1 cut(s)	715
CseI	GACGC	1 cut(s)	991
Csp6I	GTAC	2 cut(s)	130, 283
CviAII	CATG	7 cut(s)	64, 204, 268, 371, 449, 465, 523
CviQI	GTAC	2 cut(s)	130, 283
DpnI	GATC	1 cut(s)	800
DpnII	GATC	1 cut(s)	798
EaeI	YGGCCR	1 cut(s)	919
Eco105I	TACGTA	1 cut(s)	515
EcoT22I	ATGCAT	1 cut(s)	466
FaeI	CATG	7 cut(s)	67, 207, 271, 374, 452, 468, 526
FatI	CATG	7 cut(s)	63, 203, 267, 370, 448, 464, 522
FauI	CCCGC	1 cut(s)	943
Fnu4HI	GCNGC	2 cut(s)	61, 390
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	61, 390
FspBI	CTAG	2 cut(s)	140, 861
GluI	GCNGC	2 cut(s)	61, 390
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	36, 717, 921
HapII	CCGG	3 cut(s)	177, 816, 922
HgaI	GACGC	1 cut(s)	991
Hin1I	GRCGYC	1 cut(s)	1002
Hin1II	CATG	7 cut(s)	67, 207, 271, 374, 452, 468, 526
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	429, 519, 613
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	3 cut(s)	177, 816, 922
HphI	GGTGA	2 cut(s)	356, 703
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	123, 477, 1007
Hpy188III	TCNNGA	6 cut(s)	361, 423, 487, 544, 552, 935
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	2 cut(s)	307, 482
HpyCH4IV	ACGT	2 cut(s)	514, 734
HpyCH4V	TGCA	5 cut(s)	41, 60, 464, 494, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	514, 734
Hsp92I	GRCGYC	1 cut(s)	1002
Hsp92II	CATG	7 cut(s)	67, 207, 271, 374, 452, 468, 526
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	798
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	2 cut(s)	72, 401
LweI	GCATC	5 cut(s)	97, 114, 189, 243, 503
MaeI	CTAG	2 cut(s)	140, 861
MaeII	ACGT	2 cut(s)	514, 734
MaeIII	GTNAC	5 cut(s)	95, 301, 319, 430, 541
MalI	GATC	1 cut(s)	800
MboI	GATC	1 cut(s)	798
MboII	GAAGA	4 cut(s)	666, 740, 910, 913
MflI	RGATCY	1 cut(s)	798
MluCI	AATT	5 cut(s)	80, 114, 408, 417, 470
MlyI	GAGTC	2 cut(s)	438, 528
MnlI	CCTC	4 cut(s)	419, 663, 813, 977
Mph1103I	ATGCAT	1 cut(s)	466
MseI	TTAA	6 cut(s)	6, 75, 216, 701, 962, 996
MslI	CAYNNNNRTG	3 cut(s)	188, 202, 737
MspI	CCGG	3 cut(s)	177, 816, 922
MvnI	CGCG	1 cut(s)	936
MwoI	GCNNNNNNNGC	1 cut(s)	273
NdeII	GATC	1 cut(s)	798
NheI	GCTAGC	1 cut(s)	860
NlaIII	CATG	7 cut(s)	67, 207, 271, 374, 452, 468, 526
NlaIV	GGNNCC	2 cut(s)	195, 763
NmuCI	GTSAC	3 cut(s)	301, 430, 541
NruI	TCGCGA	1 cut(s)	936
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	613
PkrI	GCNGC	2 cut(s)	62, 391
PleI	GAGTC	2 cut(s)	437, 527
PpsI	GAGTC	2 cut(s)	437, 527
Ppu21I	YACGTR	1 cut(s)	515
PsiI	TTATAA	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	195, 763
PspPI	GGNCC	1 cut(s)	715
PstI	CTGCAG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	798
RruI	TCGCGA	1 cut(s)	936
RsaI	GTAC	2 cut(s)	131, 284
RsaNI	GTAC	2 cut(s)	130, 283
RseI	CAYNNNNRTG	3 cut(s)	188, 202, 737
SaqAI	TTAA	6 cut(s)	6, 75, 216, 701, 962, 996
SatI	GCNGC	2 cut(s)	61, 390
Sau3AI	GATC	1 cut(s)	798
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	2 cut(s)	438, 528
SfaNI	GCATC	5 cut(s)	97, 114, 189, 243, 503
SfcI	CTRYAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	3 cut(s)	188, 202, 737
SnaBI	TACGTA	1 cut(s)	515
Sse9I	AATT	5 cut(s)	80, 114, 408, 417, 470
SsiI	CCGC	1 cut(s)	950
SspMI	CTAG	2 cut(s)	140, 861
TaaI	ACNGT	2 cut(s)	307, 482
TaiI	ACGT	2 cut(s)	517, 737
TaqI	TCGA	1 cut(s)	92
TasI	AATT	5 cut(s)	80, 114, 408, 417, 470
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	6 cut(s)	6, 75, 216, 701, 962, 996
Tru9I	TTAA	6 cut(s)	6, 75, 216, 701, 962, 996
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	3 cut(s)	301, 430, 541
TseI	GCWGC	2 cut(s)	60, 389
Tsp45I	GTSAC	3 cut(s)	301, 430, 541
TspDTI	ATGAA	2 cut(s)	651, 740
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	2 cut(s)	80, 114
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	2 cut(s)	140, 861
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.