pycom05g01550
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011818
Physical Location & Seq
Forward (+)
1885088 .. 1887182
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1407 bp
ATGCTGGGGGAATCTACTAGTGTCTTAGCGAGCTCCATCGGCCGCGATGCTGCGGCTGCAGCTGTGGCAGCTCCCGAAGGTGGTGGCGGCAGCGGCGATGGCTCGAATAATAATTCAGGTGAAGAAACGTTCAGAGGTGGTCAAGAGGAATTGTTAGGAGGTGGCGAGAGGAGCTTCGGTGGCAATCGGTGGCCGCGCCAAGAGACTTTGGCTCTCTTGCAAATACGGTCTGAAATGGACGTGGCGTTTCGTGATGCAAGTGTTAAAGGTCCTTTATGGGAAGAGGTTTCCAGCAAGCTAGCAGCGCTTGGCTATCATCGAAGCGCCAAGAAATGCAAGGAGAAGTTTGAGAACGTCTACAAGTACCACAGGAGAACCAAAGAAGGCCGCACCGGCAAGTCCGAAGGCAAGACTTATCGGTTTTTCGATCAGTTAAACGCCCTCGAAAATCAACCTCCGACTCCGGGCAATACTACTACTCATCATCAACCTAAGCCTCATCAGTCTACAACGGTGGCAGCTGCGGCAACAATGACAACAATGGCAATGGCTAACCCTCCCCCAACCATTTCTCATCTCAATAGTAGTACTACTGTTCCATCGTCAGCTGCCCCGCACCCTACAATTCCTACTGTGTCCTCTCAAGGCATTGCAACACCAACACTTAATAACCTCACACTCCCCAGTTCATTCCCACCAACAAACCCAATAGTTCTTCCACCACCGCCACAACCTCCGCCGCCTCAACCAACAACAACAAACCCTACAAGCAATCTCAGTCATCATCATCAGCAGCAGCACACTGCATTTCCAACGTCTTTCCCAACCATACCCACTGACCTCCTTTCCAATTCCGCCTCTTCCTCCACCTCGTCTGACGAGGAGTTGGAAGGGCGGGCGAAGAAGAAGAGGAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGATGTGATCCAGAAGCAAGAGGATCTTCAGAAGAGATTCTTGGAGACCATCGAGAAACGTGAACAAGAAAGAATTGTAAGAGAAGAAGCTTGGAGAATGCAAGAGATTGCAAGAATCAATAGAGAGCACGAGATTTTAGCTCAAGAACGATCAATCAAGGCAGCCAAAGATGCCGCGGTCATGTCATTCTTGCAAAAGGTATCCGAGCAGCACCAAAACCAAAATCAAAACCAAAACCAAAGCACGCCGAACCAGTCACAGCAACTACCGTTACAACCAGCTCCACTTCCTCTTCCACTGCGGCGGCCTGCACCACCACCACAAGCACAACCACAACAGAAGGTGACGACCTTTGACATTGTTCCGAAATCAAACAACAATGGGGAGAACGATAATTTGATGATGCCACCGAGCTCATCAAGATGGCCGAAAGTGGAGGTACAGGCGTTGATCAATCGCTGA

Protein Analysis

469

Amino Acids

51.58

Weight (kDa)

9.23

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 62 - 148 1.2e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76880
fragaria_vesca FvH4_2g13850 FvH4_2g13850
malus_domestica MD05G1024400.v1.1 MD10G1025100.v1.1
prunus_persica Prupe.8G028700_v2.0.a1
pyrus_communis pycom05g01550 pycom05g01560 pycom10g01650
rosa_chinensis RchiOBHm_Chr6g0275541
rosa_laevigata RLG00000013458
rosa_multiflora Rmu_ssc0000162.1_g000013
rosa_roxburghii Rroxscaffold_7G00193200
rosa_rugosa Rorug06G0093800
rosa_samantha Rh6AG206300 Rh6BG209200 Rh6CG211400 Rh6DG201800
rosa_wichuraiana Rw6G017900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 357, 506
AccII CGCG 3 cut(s) 45, 196, 1121
AclI AACGTT 1 cut(s) 128
AclWI GGATC 2 cut(s) 946, 975
AcoI YGGCCR 3 cut(s) 40, 191, 1370
AcuI CTGAAG 1 cut(s) 956
AfaI GTAC 3 cut(s) 365, 589, 1386
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 80, 464
AhlI ACTAGT 1 cut(s) 17
AjiI CACGTC 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
Alw21I GWGCWC 3 cut(s) 35, 1074, 1361
Alw26I GTCTC 3 cut(s) 197, 928, 983
AlwI GGATC 2 cut(s) 946, 975
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 5 cut(s) 40, 191, 385, 1250, 1370
Asp700I GAANNNNTTC 2 cut(s) 923, 980
AspLEI GCGC 3 cut(s) 198, 307, 326
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 131, 1300
AsuNHI GCTAGC 1 cut(s) 298
AvaII GGWCC 1 cut(s) 269
BaeI ACNNNNGTAYC 1 cut(s) 1376
BanII GRGCYC 2 cut(s) 35, 1361
BauI CACGAG 1 cut(s) 1073
Bbv12I GWGCWC 3 cut(s) 35, 1074, 1361
BccI CCATC 5 cut(s) 44, 92, 607, 1001, 1362
BciVI GTATCC 1 cut(s) 1156
BclI TGATCA 1 cut(s) 1395
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 197, 928, 983
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 299
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 2 cut(s) 308, 327
BfuI GTATCC 1 cut(s) 1156
BglI GCCNNNNNGGC 1 cut(s) 393
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 1 cut(s) 269
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 465
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 4 cut(s) 37, 244, 1105, 1338
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 627, 1071
BpuMI CCSGG 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 983
BsaJI CCNNGG 1 cut(s) 1119
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 464
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 684, 1198
Bse3DI GCAATG 2 cut(s) 552, 648
BseDI CCNNGG 1 cut(s) 1119
BseGI GGATG 1 cut(s) 952
BseLI CCNNNNNNNGG 2 cut(s) 80, 464
BseMI GCAATG 2 cut(s) 552, 648
BseMII CTCAG 1 cut(s) 790
BseNI ACTGG 2 cut(s) 684, 1198
BseRI GAGGAG 2 cut(s) 184, 896
BseX3I CGGCCG 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 1239
Bsh1236I CGCG 3 cut(s) 45, 196, 1121
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 5 cut(s) 42, 193, 387, 1252, 1372
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 3 cut(s) 35, 1074, 1361
BsiSI CCGG 2 cut(s) 393, 464
BslI CCNNNNNNNGG 2 cut(s) 80, 464
BsmAI GTCTC 3 cut(s) 197, 928, 983
BsmI GAATGC 1 cut(s) 1047
BsnI GGCC 5 cut(s) 42, 193, 387, 1252, 1372
Bso31I GGTCTC 1 cut(s) 983
Bsp1286I GDGCHC 3 cut(s) 35, 1074, 1361
Bsp143I GATC 5 cut(s) 427, 951, 967, 1094, 1395
BspANI GGCC 5 cut(s) 42, 193, 387, 1252, 1372
BspCNI CTCAG 1 cut(s) 789
BspFNI CGCG 3 cut(s) 45, 196, 1121
BspMAI CTGCAG 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 946, 975
BspTNI GGTCTC 1 cut(s) 983
BsrDI GCAATG 2 cut(s) 552, 648
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 684, 1198
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 1119
BssMI GATC 5 cut(s) 427, 951, 967, 1094, 1395
BssSI CACGAG 1 cut(s) 1073
Bst2BI CACGAG 1 cut(s) 1073
Bst4CI ACNGT 5 cut(s) 228, 514, 595, 634, 1215
Bst6I CTCTTC 5 cut(s) 276, 865, 902, 971, 1242
BstC8I GCNNGC 6 cut(s) 31, 296, 300, 897, 1190, 1254
BstDEI CTNAG 3 cut(s) 25, 492, 776
BstDSI CCRYGG 1 cut(s) 1119
BstF5I GGATG 1 cut(s) 952
BstFNI CGCG 3 cut(s) 45, 196, 1121
BstH2I RGCGCY 2 cut(s) 308, 327
BstHHI GCGC 3 cut(s) 198, 307, 326
BstKTI GATC 5 cut(s) 430, 954, 970, 1097, 1398
BstMAI GTCTC 3 cut(s) 197, 928, 983
BstMBI GATC 5 cut(s) 427, 951, 967, 1094, 1395
BstMCI CGRYCG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 3 cut(s) 45, 196, 1121
BstX2I RGATCY 1 cut(s) 967
BstYI RGATCY 1 cut(s) 967
BstZI CGGCCG 1 cut(s) 40
BsuI GTATCC 1 cut(s) 1156
BsuRI GGCC 5 cut(s) 42, 193, 387, 1252, 1372
BtgI CCRYGG 1 cut(s) 1119
BtgZI GCGATG 2 cut(s) 60, 111
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 952
BtsI GCAGTG 2 cut(s) 801, 1241
BtsIMutI CAGTG 3 cut(s) 801, 834, 1241
Cac8I GCNNGC 6 cut(s) 31, 296, 300, 897, 1190, 1254
CfoI GCGC 3 cut(s) 198, 307, 326
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 269
Cfr42I CCGCGG 1 cut(s) 1122
Csp6I GTAC 3 cut(s) 364, 588, 1385
CviAII CATG 1 cut(s) 1126
CviQI GTAC 3 cut(s) 364, 588, 1385
DdeI CTNAG 3 cut(s) 25, 492, 776
DpnI GATC 5 cut(s) 429, 953, 969, 1096, 1397
DpnII GATC 5 cut(s) 427, 951, 967, 1094, 1395
EaeI YGGCCR 3 cut(s) 40, 191, 1370
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 5 cut(s) 276, 865, 902, 971, 1242
EarI CTCTTC 5 cut(s) 276, 865, 902, 971, 1242
EciI GGCGGA 2 cut(s) 726, 844
Ecl136II GAGCTC 2 cut(s) 33, 1359
EclXI CGGCCG 1 cut(s) 40
Eco24I GRGCYC 2 cut(s) 35, 1361
Eco31I GGTCTC 1 cut(s) 983
Eco47I GGWCC 1 cut(s) 269
Eco47III AGCGCT 1 cut(s) 306
Eco52I CGGCCG 1 cut(s) 40
Eco53kI GAGCTC 2 cut(s) 33, 1359
Eco57I CTGAAG 1 cut(s) 956
EcoICRI GAGCTC 2 cut(s) 33, 1359
EcoO109I RGGNCCY 1 cut(s) 269
EcoT38I GRGCYC 2 cut(s) 35, 1361
FaeI CATG 1 cut(s) 1129
FaiI YATR 3 cut(s) 277, 830, 1127
FalI AAGNNNNNCTT 6 cut(s) 911, 943, 954, 986, 968, 1000
FatI CATG 1 cut(s) 1125
FauI CCCGC 2 cut(s) 621, 888
FbaI TGATCA 1 cut(s) 1395
FblI GTMKAC 2 cut(s) 357, 506
FokI GGATG 1 cut(s) 959
FriOI GRGCYC 2 cut(s) 35, 1361
FspBI CTAG 2 cut(s) 18, 299
GlaI GCGC 3 cut(s) 197, 306, 325
GsaI CCCAGC 1 cut(s) 8
HaeII RGCGCY 2 cut(s) 308, 327
HaeIII GGCC 5 cut(s) 42, 193, 387, 1252, 1372
HapII CCGG 2 cut(s) 393, 464
HhaI GCGC 3 cut(s) 198, 307, 326
Hin1II CATG 1 cut(s) 1129
Hin6I GCGC 3 cut(s) 196, 305, 324
HinP1I GCGC 3 cut(s) 196, 305, 324
HindIII AAGCTT 1 cut(s) 1032
HinfI GANTC 4 cut(s) 11, 460, 981, 1059
HpaII CCGG 2 cut(s) 393, 464
HphI GGTGA 2 cut(s) 131, 1300
Hpy166II GTNNAC 3 cut(s) 358, 507, 1007
Hpy188I TCNGA 8 cut(s) 134, 232, 403, 459, 877, 975, 1150, 1311
Hpy188III TCNNGA 8 cut(s) 74, 143, 251, 931, 955, 997, 1088, 1365
Hpy8I GTNNAC 3 cut(s) 358, 507, 1007
HpyAV CCTTC 7 cut(s) 71, 377, 398, 884, 913, 937, 1279
HpyCH4III ACNGT 5 cut(s) 228, 514, 595, 634, 1215
HpyCH4IV ACGT 5 cut(s) 128, 240, 354, 815, 1003
HpyF3I CTNAG 3 cut(s) 25, 492, 776
HpySE526I ACGT 5 cut(s) 128, 240, 354, 815, 1003
Hsp92II CATG 1 cut(s) 1129
HspAI GCGC 3 cut(s) 196, 305, 324
Ksp22I TGATCA 1 cut(s) 1395
KspI CCGCGG 1 cut(s) 1122
Kzo9I GATC 5 cut(s) 427, 951, 967, 1094, 1395
LmnI GCTCC 4 cut(s) 38, 76, 171, 1231
LweI GCATC 4 cut(s) 37, 244, 1105, 1338
MaeI CTAG 2 cut(s) 18, 299
MaeII ACGT 5 cut(s) 128, 240, 354, 815, 1003
MaeIII GTNAC 3 cut(s) 1200, 1215, 1288
MalI GATC 5 cut(s) 429, 953, 969, 1096, 1397
MboI GATC 5 cut(s) 427, 951, 967, 1094, 1395
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 3 cut(s) 35, 1074, 1361
MluCI AATT 6 cut(s) 112, 149, 624, 850, 1017, 1339
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 3 cut(s) 482, 836, 867
MroXI GAANNNNTTC 2 cut(s) 923, 980
MseI TTAA 3 cut(s) 264, 434, 666
MslI CAYNNNNRTG 1 cut(s) 1366
MspA1I CMGCKG 5 cut(s) 62, 93, 521, 608, 1121
MspI CCGG 2 cut(s) 393, 464
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 1047
MvnI CGCG 3 cut(s) 45, 196, 1121
NciI CCSGG 1 cut(s) 465
NdeII GATC 5 cut(s) 427, 951, 967, 1094, 1395
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 1 cut(s) 1129
NmuCI GTSAC 2 cut(s) 1200, 1288
PctI GAATGC 1 cut(s) 1047
PdmI GAANNNNTTC 2 cut(s) 923, 980
PfeI GAWTC 3 cut(s) 11, 981, 1059
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 269
Psp124BI GAGCTC 2 cut(s) 35, 1361
Psp1406I AACGTT 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 4
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 967
PvuII CAGCTG 3 cut(s) 62, 521, 608
RsaI GTAC 3 cut(s) 365, 589, 1386
RsaNI GTAC 3 cut(s) 364, 588, 1385
RseI CAYNNNNRTG 1 cut(s) 1366
SacI GAGCTC 2 cut(s) 35, 1361
SacII CCGCGG 1 cut(s) 1122
SaqAI TTAA 3 cut(s) 264, 434, 666
Sau3AI GATC 5 cut(s) 427, 951, 967, 1094, 1395
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 3 cut(s) 35, 1074, 1361
SfaNI GCATC 4 cut(s) 37, 244, 1105, 1338
SfcI CTRYAG 1 cut(s) 57
Sfr303I CCGCGG 1 cut(s) 1122
SgrBI CCGCGG 1 cut(s) 1122
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 1366
SmlI CTYRAG 2 cut(s) 642, 1086
SmoI CTYRAG 2 cut(s) 642, 1086
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 6 cut(s) 112, 149, 624, 850, 1017, 1339
SspMI CTAG 2 cut(s) 18, 299
SstI GAGCTC 2 cut(s) 35, 1361
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 5 cut(s) 228, 514, 595, 634, 1215
TaiI ACGT 5 cut(s) 131, 243, 357, 818, 1006
TaqI TCGA 6 cut(s) 104, 319, 426, 444, 930, 996
TasI AATT 6 cut(s) 112, 149, 624, 850, 1017, 1339
TatI WGTACW 1 cut(s) 587
TfiI GAWTC 3 cut(s) 11, 981, 1059
Tru1I TTAA 3 cut(s) 264, 434, 666
Tru9I TTAA 3 cut(s) 264, 434, 666
TscAI CASTG 3 cut(s) 808, 841, 1248
TseFI GTSAC 2 cut(s) 1200, 1288
Tsp45I GTSAC 2 cut(s) 1200, 1288
TspDTI ATGAA 2 cut(s) 678, 956
TspRI CASTG 3 cut(s) 808, 841, 1248
VpaK11BI GGWCC 1 cut(s) 269
XmiI GTMKAC 2 cut(s) 357, 506
XmnI GAANNNNTTC 2 cut(s) 923, 980
XspI CTAG 2 cut(s) 18, 299
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.