Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0016258

Physical Location & Seq

Genomic Coordinates Forward (+)

3818614 .. 3820106

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGAAGACATAGATGAGGAGGAGGAGCTTCTGAATCTTAGCCTTGCAATTGTTACAAGTTCAGGGAGGGAGAGATTTAAGAAGAGGAAGAGATCAAGAGATGATGGTATTGCTAATAGTATTTTGGTGAGCCCTCTAAACTCTTATGAAGGTTGTGAAGGGAAGATATTTAGGCTTCTTCAAATGAGGGAACAAATGCTAAAAAAACTAGACCTTCACAAGAAGAAAGGGGTTGCTTTTGATGATGAAGATGGAAAGGGCCTCCACCTGATCCACATGTTGCTCATAACAGCCACCGCAGTTAACGAAAACAATGTCGGCTCAGCCTTGGAGCATCTTACTGAGTTGTACAAAATTGTTTCCTTATGCGGTGACTCTGTCCAACGAGTAGTGGCTTATTTTGCAGACGGCTTGGCTGCAAGGCTTCTCACTCGAAAATCGCCGTTTTATGACATGATCATGAAGGAACCGACGAGTGAAGAAGAGTTTGTAGCGTTCACCGCTCTCTACCGGGTGTCTCCGTACTACCAGTTTGCTCATTTCACGGCAAACCAAGCAATCATTGAGGCATTTGAGAAGGAACAAGAGAAGAACAATCGGGCATTACATGTTATTGATTTTGATGTCTCCTATGGATTTCAATGGCCTTCTCTTATACAGTCTCTGTCCGAGAAGGCAAGCAGTAGCAATCGTATATCGCTCAGAATAACAGGGTTCGGAAGAAGCGTGGATGAGCTACGTGAAACGGAGAACAGACTGACAAGCTTCTCAAAGGGGTTTCGGAATCTTTTTTTTGAATTTCAAGGGTTGTTGAGAAGCTCAAAGCTCATAAACTTGAGGAAGAAGAGAAACGAAACAATTGCAGTGAATTTGGTTTTTCATTTGAATACTTTGAGCAATAATTTGAAGATATCTGACTTGTTAAATTCTGTACATTTACTTAACCCTTCCATTGTAATCTTGGTTGAACAAGAAGGGAGCAAAAGTCCTCGAAGTTTCTTATCGAGATTCATGGAGACTTTGCATTATTTTGCAGCCATGTTTGATTCTTTAGATGATTGTCTGCCATTAGAGAGTGCTGAAAGGTTGAGCATTGAGAAGAACCACCTCGGAAAAGAGATCAAAAGCATGCTCAATTACGACAATAACAACGATGAGAATTGTCCAAAAACTGAAAAGACGGAAACATGGAAGGCGAAGATGGAGAGTCATGGTTTTGAAGGAATAAATCTAAGCTCTAAGTCCGAGATACAAGCAAGACTTCTTTTAAAAATTAGGACTCACTATTCTCCACTTGAGTTTGATGGGAGTAGTGGAGCTGCAGCTGGGTTCAAGGTTTTCGAAAGAGACGACGGAAGGACAATATCTCTTGGGTGGCAAGACAGGTATCTGCTTACAATTTCTGCATGGCACTGCACTATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

476

Amino Acids

54.24

Weight (kDa)

6.27

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016258)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12280
malus_domestica	MD05G1040300.v1.1 MD10G1046300.v1.1
prunus_persica	Prupe.8G054000_v2.0.a1
pyrus_communis	pycom05g03290
rosa_chinensis	RchiOBHm_Chr6g0272211
rosa_laevigata	RLG00000013690
rosa_multiflora	Rmu_sc0005748.1_g000002
rosa_roxburghii	Rroxscaffold_7G00196470
rosa_rugosa	Rorug06G0067400
rosa_samantha	Rh6BG187000 Rh6CG185100 Rh6DG176800
rosa_wichuraiana	Rw0G003840 Rw6G015840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	503
AciI	CCGC	3 cut(s)	297, 369, 501
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	3 cut(s)	797, 868, 925
AfaI	GTAC	3 cut(s)	350, 524, 933
AflIII	ACRYGT	2 cut(s)	276, 607
AgsI	TTSAA	9 cut(s)	182, 641, 797, 803, 886, 907, 968, 1220, 1333
AluBI	AGCT	8 cut(s)	28, 736, 765, 819, 826, 1236, 1319, 1325
AluI	AGCT	8 cut(s)	28, 736, 765, 819, 826, 1236, 1319, 1325
Alw26I	GTCTC	5 cut(s)	522, 631, 666, 1010, 1341
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	664
AoxI	GGCC	2 cut(s)	259, 644
ApeKI	GCWGC	4 cut(s)	416, 1034, 1319, 1322
ApoI	RAATTY	3 cut(s)	797, 868, 925
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	139, 383, 490
AsuII	TTCGAA	1 cut(s)	1341
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	403, 1046, 1306, 1334
BccI	CCATC	4 cut(s)	98, 245, 1195, 1298
BceAI	ACGGC	3 cut(s)	424, 427, 561
BcgI	CGANNNNNNTGC	2 cut(s)	842, 876
BclI	TGATCA	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	5 cut(s)	522, 631, 666, 1010, 1341
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	1320
BisI	GCNGC	4 cut(s)	417, 1035, 1320, 1323
BlpI	GCTNAGC	1 cut(s)	322
BlsI	GCNGC	4 cut(s)	418, 1036, 1321, 1324
Bme1390I	CCNGG	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	322
Bpu14I	TTCGAA	1 cut(s)	1341
BpuEI	CTTGAG	2 cut(s)	856, 1316
BpuMI	CCSGG	1 cut(s)	512
BsaAI	YACGTR	1 cut(s)	740
BsaJI	CCNNGG	2 cut(s)	327, 1108
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bse1I	ACTGG	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	327, 1108
BseGI	GGATG	1 cut(s)	736
BseMII	CTCAG	3 cut(s)	333, 336, 715
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	3 cut(s)	32, 35, 38
BseXI	GCAGC	4 cut(s)	403, 1046, 1306, 1334
BseYI	CCCAGC	1 cut(s)	1325
BsgI	GTGCAG	1 cut(s)	1399
BshFI	GGCC	2 cut(s)	261, 646
BsiSI	CCGG	1 cut(s)	511
BsmAI	GTCTC	5 cut(s)	522, 631, 666, 1010, 1341
BsmBI	CGTCTC	1 cut(s)	1341
BsnI	GGCC	2 cut(s)	261, 646
Bsp119I	TTCGAA	1 cut(s)	1341
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	2 cut(s)	348, 931
Bsp143I	GATC	4 cut(s)	92, 270, 456, 1119
Bsp1720I	GCTNAGC	1 cut(s)	322
BspACI	CCGC	3 cut(s)	297, 369, 501
BspANI	GGCC	2 cut(s)	261, 646
BspCNI	CTCAG	3 cut(s)	334, 335, 714
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	1324
BspPI	GGATC	1 cut(s)	265
BspT104I	TTCGAA	1 cut(s)	1341
BsrBI	CCGCTC	1 cut(s)	503
BsrGI	TGTACA	2 cut(s)	348, 931
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	327, 1108
BssMI	GATC	4 cut(s)	92, 270, 456, 1119
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	4 cut(s)	77, 83, 477, 839
BstAUI	TGTACA	2 cut(s)	348, 931
BstBAI	YACGTR	1 cut(s)	740
BstBI	TTCGAA	1 cut(s)	1341
BstC8I	GCNNGC	2 cut(s)	679, 1130
BstDEI	CTNAG	6 cut(s)	38, 322, 342, 701, 1232, 1239
BstF5I	GGATG	1 cut(s)	736
BstKTI	GATC	4 cut(s)	95, 273, 459, 1122
BstMAI	GTCTC	5 cut(s)	522, 631, 666, 1010, 1341
BstMBI	GATC	4 cut(s)	92, 270, 456, 1119
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 500, 554
BstNSI	RCATGY	3 cut(s)	280, 611, 1132
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	1320
BstV1I	GCAGC	4 cut(s)	403, 1046, 1306, 1334
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	261, 646
BtsCI	GGATG	1 cut(s)	736
BtsI	GCAGTG	2 cut(s)	870, 1411
BtsIMutI	CAGTG	2 cut(s)	870, 1411
Cac8I	GCNNGC	2 cut(s)	679, 1130
CaiI	CAGNNNCTG	1 cut(s)	664
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	349, 523, 932
CviQI	GTAC	3 cut(s)	349, 523, 932
DdeI	CTNAG	6 cut(s)	38, 322, 342, 701, 1232, 1239
DpnI	GATC	4 cut(s)	94, 272, 458, 1121
DpnII	GATC	4 cut(s)	92, 270, 456, 1119
DraI	TTTAAA	1 cut(s)	1269
Eam1104I	CTCTTC	4 cut(s)	77, 83, 477, 839
EarI	CTCTTC	4 cut(s)	77, 83, 477, 839
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	912
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	912
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	1341
FalI	AAGNNNNNCTT	2 cut(s)	1245, 1277
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	4 cut(s)	417, 1035, 1320, 1323
FokI	GGATG	1 cut(s)	743
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	4 cut(s)	417, 1035, 1320, 1323
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	4 cut(s)	417, 1035, 1320, 1323
GsaI	CCCAGC	1 cut(s)	1329
HaeIII	GGCC	2 cut(s)	261, 646
HapII	CCGG	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	763
HinfI	GANTC	7 cut(s)	34, 374, 784, 1008, 1046, 1207, 1279
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	3 cut(s)	139, 383, 490
Hpy166II	GTNNAC	2 cut(s)	304, 498
Hpy188I	TCNGA	8 cut(s)	33, 670, 704, 719, 783, 916, 1112, 1246
Hpy188III	TCNNGA	3 cut(s)	96, 460, 1005
Hpy8I	GTNNAC	2 cut(s)	304, 498
Hpy99I	CGWCG	2 cut(s)	475, 1355
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	9 cut(s)	47, 404, 419, 863, 1024, 1034, 1322, 1406, 1416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 500, 554
HpyF3I	CTNAG	6 cut(s)	38, 322, 342, 701, 1232, 1239
HpySE526I	ACGT	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	456
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	92, 270, 456, 1119
LmnI	GCTCC	4 cut(s)	25, 331, 978, 1316
LpnPI	CCDG	7 cut(s)	48, 281, 524, 542, 696, 1311, 1369
Lsp1109I	GCAGC	4 cut(s)	403, 1046, 1306, 1334
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	2 cut(s)	52, 371
MalI	GATC	4 cut(s)	94, 272, 458, 1121
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	4 cut(s)	92, 270, 456, 1119
MfeI	CAATTG	2 cut(s)	48, 858
MhlI	GDGCHC	1 cut(s)	134
MlyI	GAGTC	3 cut(s)	368, 1216, 1273
MmeI	TCCRAC	1 cut(s)	406
MseI	TTAA	5 cut(s)	78, 303, 923, 942, 1268
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	1325
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	2 cut(s)	48, 858
MwoI	GCNNNNNNNGC	3 cut(s)	401, 500, 554
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	4 cut(s)	92, 270, 456, 1119
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	371
NspI	RCATGY	3 cut(s)	280, 611, 1132
NspV	TTCGAA	1 cut(s)	1341
PaeI	GCATGC	1 cut(s)	1132
PagI	TCATGA	1 cut(s)	459
PciI	ACATGT	2 cut(s)	276, 607
PcsI	WCGNNNNNNNCGW	2 cut(s)	723, 1347
PfeI	GAWTC	4 cut(s)	34, 784, 1008, 1046
PflFI	GACNNNGTC	1 cut(s)	377
PkrI	GCNGC	4 cut(s)	418, 1036, 1321, 1324
PleI	GAGTC	3 cut(s)	368, 1215, 1273
PpsI	GAGTC	3 cut(s)	368, 1215, 1273
Ppu21I	YACGTR	1 cut(s)	740
PscI	ACATGT	2 cut(s)	276, 607
PspFI	CCCAGC	1 cut(s)	1325
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	1324
PstNI	CAGNNNCTG	1 cut(s)	664
PsyI	GACNNNGTC	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	1325
RsaI	GTAC	3 cut(s)	350, 524, 933
RsaNI	GTAC	3 cut(s)	349, 523, 932
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	5 cut(s)	78, 303, 923, 942, 1268
SatI	GCNGC	4 cut(s)	417, 1035, 1320, 1323
Sau3AI	GATC	4 cut(s)	92, 270, 456, 1119
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	3 cut(s)	368, 1216, 1273
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	1320
SfuI	TTCGAA	1 cut(s)	1341
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	835, 1295
SmoI	CTYRAG	2 cut(s)	835, 1295
SphI	GCATGC	1 cut(s)	1132
SsiI	CCGC	3 cut(s)	297, 369, 501
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	660
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	4 cut(s)	433, 991, 1004, 1341
TatI	WGTACW	2 cut(s)	348, 931
TfiI	GAWTC	4 cut(s)	34, 784, 1008, 1046
Tru1I	TTAA	5 cut(s)	78, 303, 923, 942, 1268
Tru9I	TTAA	5 cut(s)	78, 303, 923, 942, 1268
TscAI	CASTG	2 cut(s)	870, 1418
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	4 cut(s)	416, 1034, 1319, 1322
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	5 cut(s)	162, 261, 476, 869, 1000
TspGWI	ACGGA	4 cut(s)	510, 761, 1196, 1368
TspRI	CASTG	2 cut(s)	870, 1418
Tth111I	GACNNNGTC	1 cut(s)	377
XapI	RAATTY	3 cut(s)	797, 868, 925
XceI	RCATGY	3 cut(s)	280, 611, 1132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.