Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002885

Physical Location & Seq

Genomic Coordinates Forward (+)

8935860 .. 8940821

Gene Structure 4962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGATGGCCGCTTCGCCGCCGTTCGCAGTGGCCGCTTTCCTCATCGCTTTCTTCATCTCCAAAATCGCCGCCGCACAGTTCCCCCAAAACTCAACCGGAATCTACAATCTCCACCTTCCAACACCGTACCAGTCTCTCTGCGCCAGTCTCATTCACCCCTCCGGTTACCCTTGCTCGGAGCACAAAATTCAAACTAGGGATGGCTACTTTTTGGGTCTTCAACGCGTGTCGTCATCGAATTTGGATTTGAGAGCACAGCCGGGTCCTCCAGTGTTGCTCCAGCATGGACTCTTCATGGCAGGTGATGCATGGTTTTTAAATTCTCCTGAACAATCACTGGGCTTCATCCTCGCAGATGAAGGCTTTGATGTATGGGTAGGAAATGTGCGTGGAACGCGTTGGAGTCAGGGGCACATATCTTTATCAGAAGAGGATAAGGAATATTGGGATTGGAGTTGGCAGGAATTGGCTCTCTATGATCTTTCTGAAATGATTAACCACATATATTCGATAACAAACTCCAAAGTCTTTATTGTTGGACATTCACAGGGAACAATCATGTCTTTAGCTGCTCTCACCCAGCCAGATATAGCAGAAATGGTTGAAGCTGCTGCTCTTCTCTGTCCAATATCATACTTGGAACATATCAGCACTCAATTTGTAATTAGAATGGTTGATGTGCATCTTGATCAGATGATTCTTGCTATGGGCATCCATCAACTAAACTTTAGAAGTGATTGGGGAATTAACCTTCTGAATTCAATATGCGATGGCCATGTTGACTGCAATGACTTGCTAACGGCCATAACAGGGAAGAATTGTTGCTTCAATAACTCACGTGTGGACTTCTATCTGGATTATGAACCCCACCCATCATCTGCAAAGAACTTTCACCATCTCTTCCAAATGATTCGCAAGGGTACATTTTCAAAGTATGACTATGGCATCTTGAAAAATCTGATCGAGTATGGTCAGTTGAAACCCCCTGCATTTGATCTCAGTCTCATACCCAAGTCGTTGCCACTGTTGATGGCTTATGGAGGCAATGATGCTCTAGCAGATGTGGCAGATTTCCAGCACACCCTCAAGGAATTGCAGTCTACTCCACAGTTGGTTTATCTTGAGAACTATGGTCACGTGGACTTCATTGTCAGCACAACAGCCAAGGAAGATCTTCATGATCAATTGATTGGGTTTTTTAGACGAGGGAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

406

Amino Acids

45.69

Weight (kDa)

5.58

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	49 - 107	6.3e-18	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	89 - 212	9.6e-11	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63700 AT5G63700
fragaria_vesca	FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310
malus_domestica	MD15G1440700.v1.1
prunus_persica	Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1
pyrus_communis	pycom15g38850
rosa_chinensis	RchiOBHm_Chr6g0272281 RchiOBHm_Chr6g0272291
rosa_laevigata	RLG00000013684 RLG00000013685
rosa_multiflora	Rmu_co8463891.1_g000001 Rmu_sc0004424.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196450
rosa_rugosa	Rorug06G0067400
rosa_samantha	Rh6AG184100 Rh6BG187300 Rh6CG185600 Rh6DG177400
rosa_wichuraiana	Rw6G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	1148
Acc36I	ACCTGC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	1100
AccII	CGCG	2 cut(s)	225, 397
AciI	CCGC	5 cut(s)	9, 17, 33, 69, 72
AcoI	YGGCCR	4 cut(s)	6, 30, 772, 801
AcsI	RAATTY	4 cut(s)	186, 238, 319, 757
AcvI	CACGTG	2 cut(s)	839, 1138
AfaI	GTAC	2 cut(s)	128, 922
AfiI	CCNNNNNNNGG	2 cut(s)	175, 810
AflIII	ACRYGT	3 cut(s)	223, 395, 838
AgsI	TTSAA	8 cut(s)	191, 221, 605, 762, 829, 930, 952, 979
AluBI	AGCT	2 cut(s)	569, 608
AluI	AGCT	2 cut(s)	569, 608
Alw21I	GWGCWC	2 cut(s)	183, 256
Alw26I	GTCTC	3 cut(s)	138, 152, 1007
AoxI	GGCC	4 cut(s)	6, 30, 772, 801
ApeKI	GCWGC	3 cut(s)	569, 608, 611
ApoI	RAATTY	4 cut(s)	186, 238, 319, 757
Asp700I	GAANNNNTTC	1 cut(s)	1173
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	4 cut(s)	146, 314, 568, 884
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	774
BbrPI	CACGTG	2 cut(s)	839, 1138
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	183, 256
BbvI	GCAGC	3 cut(s)	556, 595, 598
BccI	CCATC	6 cut(s)	194, 723, 764, 880, 903, 1024
BceAI	ACGGC	2 cut(s)	4, 816
BclI	TGATCA	2 cut(s)	688, 1180
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	3 cut(s)	138, 152, 1007
BfaI	CTAG	2 cut(s)	195, 1055
BfuAI	ACCTGC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	1171
BisI	GCNGC	8 cut(s)	9, 17, 33, 69, 72, 570, 609, 612
BlsI	GCNGC	8 cut(s)	10, 18, 34, 70, 73, 571, 610, 613
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	5 cut(s)	295, 691, 720, 954, 1039
BmuI	ACTGGG	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	2 cut(s)	252, 263
BpuEI	CTTGAG	2 cut(s)	1070, 1142
BpuMI	CCSGG	1 cut(s)	261
BsaAI	YACGTR	2 cut(s)	839, 1138
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	1164
BsaWI	WCCGGW	2 cut(s)	95, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 810
Bse1I	ACTGG	4 cut(s)	130, 144, 269, 342
Bse3DI	GCAATG	2 cut(s)	793, 1051
Bse8I	GATNNNNATC	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	1164
BseGI	GGATG	3 cut(s)	205, 345, 711
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	175, 810
BseMI	GCAATG	2 cut(s)	793, 1051
BseMII	CTCAG	1 cut(s)	1012
BseNI	ACTGG	4 cut(s)	130, 144, 269, 342
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	556, 595, 598
BseYI	CCCAGC	1 cut(s)	579
Bsh1236I	CGCG	2 cut(s)	225, 397
BshFI	GGCC	4 cut(s)	8, 32, 774, 803
BsiHKAI	GWGCWC	2 cut(s)	183, 256
BsiSI	CCGG	3 cut(s)	96, 162, 260
BslI	CCNNNNNNNGG	2 cut(s)	175, 810
BsmAI	GTCTC	3 cut(s)	138, 152, 1007
BsnI	GGCC	4 cut(s)	8, 32, 774, 803
Bsp1286I	GDGCHC	3 cut(s)	183, 256, 414
Bsp143I	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
BspACI	CCGC	5 cut(s)	9, 17, 33, 69, 72
BspANI	GGCC	4 cut(s)	8, 32, 774, 803
BspCNI	CTCAG	1 cut(s)	1011
BspFNI	CGCG	2 cut(s)	225, 397
BspHI	TCATGA	1 cut(s)	1177
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	793, 1051
BsrI	ACTGG	4 cut(s)	130, 144, 269, 342
BssECI	CCNNGG	1 cut(s)	1164
BssMI	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
BssT1I	CCWWGG	1 cut(s)	1164
Bst4CI	ACNGT	4 cut(s)	78, 126, 1026, 1110
Bst6I	CTCTTC	4 cut(s)	296, 423, 621, 905
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstBAI	YACGTR	2 cut(s)	839, 1138
BstDEI	CTNAG	1 cut(s)	998
BstEII	GGTNACC	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	205, 345, 711
BstFNI	CGCG	2 cut(s)	225, 397
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	6 cut(s)	481, 691, 963, 997, 1174, 1183
BstMAI	GTCTC	3 cut(s)	138, 152, 1007
BstMBI	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 305, 394, 1064
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	2 cut(s)	225, 397
BstV1I	GCAGC	3 cut(s)	556, 595, 598
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	1171
BstYI	RGATCY	1 cut(s)	1171
BsuRI	GGCC	4 cut(s)	8, 32, 774, 803
BtgZI	GCGATG	2 cut(s)	28, 783
BtsCI	GGATG	3 cut(s)	205, 345, 711
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	33, 276, 335, 1022
BveI	ACCTGC	1 cut(s)	290
CciI	TCATGA	1 cut(s)	1177
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	127, 921
CviAII	CATG	6 cut(s)	284, 295, 309, 559, 776, 1178
CviQI	GTAC	2 cut(s)	127, 921
DdeI	CTNAG	1 cut(s)	998
DpnI	GATC	6 cut(s)	480, 690, 962, 996, 1173, 1182
DpnII	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
DraI	TTTAAA	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	1148
DseDI	GACNNNNNNGTC	1 cut(s)	1148
EaeI	YGGCCR	4 cut(s)	6, 30, 772, 801
Eam1104I	CTCTTC	4 cut(s)	296, 423, 621, 905
EarI	CTCTTC	4 cut(s)	296, 423, 621, 905
Eco130I	CCWWGG	1 cut(s)	1164
Eco47I	GGWCC	1 cut(s)	263
Eco72I	CACGTG	2 cut(s)	839, 1138
Eco91I	GGTNACC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	1164
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	1164
FaeI	CATG	6 cut(s)	287, 298, 312, 562, 779, 1181
FatI	CATG	6 cut(s)	283, 294, 308, 558, 775, 1177
FbaI	TGATCA	2 cut(s)	688, 1180
FblI	GTMKAC	1 cut(s)	1100
Fnu4HI	GCNGC	8 cut(s)	9, 17, 33, 69, 72, 570, 609, 612
FokI	GGATG	3 cut(s)	212, 332, 698
Fsp4HI	GCNGC	8 cut(s)	9, 17, 33, 69, 72, 570, 609, 612
FspBI	CTAG	2 cut(s)	195, 1055
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	8 cut(s)	9, 17, 33, 69, 72, 570, 609, 612
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	2 cut(s)	252, 263
HaeIII	GGCC	4 cut(s)	8, 32, 774, 803
HapII	CCGG	3 cut(s)	96, 162, 260
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	6 cut(s)	287, 298, 312, 562, 779, 1181
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	5 cut(s)	99, 288, 403, 697, 910
HpaII	CCGG	3 cut(s)	96, 162, 260
HphI	GGTGA	4 cut(s)	146, 314, 568, 884
Hpy166II	GTNNAC	4 cut(s)	781, 844, 1101, 1141
Hpy188I	TCNGA	6 cut(s)	178, 427, 487, 693, 756, 960
Hpy188III	TCNNGA	6 cut(s)	326, 686, 854, 949, 1121, 1178
Hpy8I	GTNNAC	4 cut(s)	781, 844, 1101, 1141
HpyAV	CCTTC	3 cut(s)	125, 353, 761
HpyCH4III	ACNGT	4 cut(s)	78, 126, 1026, 1110
HpyCH4IV	ACGT	2 cut(s)	838, 1137
HpyCH4V	TGCA	6 cut(s)	308, 682, 786, 881, 989, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 305, 394, 1064
HpyF3I	CTNAG	1 cut(s)	998
HpySE526I	ACGT	2 cut(s)	838, 1137
Hsp92II	CATG	6 cut(s)	287, 298, 312, 562, 779, 1181
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	2 cut(s)	688, 1180
Kzo9I	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	178, 282
Lsp1109I	GCAGC	3 cut(s)	556, 595, 598
LweI	GCATC	5 cut(s)	295, 691, 720, 954, 1039
MaeI	CTAG	2 cut(s)	195, 1055
MaeII	ACGT	2 cut(s)	838, 1137
MaeIII	GTNAC	2 cut(s)	164, 1133
MalI	GATC	6 cut(s)	480, 690, 962, 996, 1173, 1182
MboI	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
MboII	GAAGA	9 cut(s)	43, 209, 283, 440, 608, 826, 892, 1166, 1181
MfeI	CAATTG	1 cut(s)	1184
MflI	RGATCY	1 cut(s)	1171
MhlI	GDGCHC	3 cut(s)	183, 256, 414
MlsI	TGGCCA	1 cut(s)	774
MluI	ACGCGT	2 cut(s)	223, 395
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	2 cut(s)	282, 412
MmeI	TCCRAC	3 cut(s)	143, 380, 517
MnlI	CCTC	8 cut(s)	50, 169, 276, 359, 424, 1034, 1094, 1199
Mox20I	TGGCCA	1 cut(s)	774
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	1173
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	3 cut(s)	317, 495, 747
Msp20I	TGGCCA	1 cut(s)	774
MspI	CCGG	3 cut(s)	96, 162, 260
MspR9I	CCNGG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	1184
MvnI	CGCG	2 cut(s)	225, 397
MwoI	GCNNNNNNNGC	4 cut(s)	32, 305, 394, 1064
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
NlaIII	CATG	6 cut(s)	287, 298, 312, 562, 779, 1181
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	1133
NsiI	ATGCAT	1 cut(s)	310
PagI	TCATGA	1 cut(s)	1177
PaqCI	CACCTGC	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	1173
PfeI	GAWTC	3 cut(s)	99, 697, 910
PkrI	GCNGC	8 cut(s)	10, 18, 34, 70, 73, 571, 610, 613
PleI	GAGTC	2 cut(s)	282, 411
PmaCI	CACGTG	2 cut(s)	839, 1138
PmlI	CACGTG	2 cut(s)	839, 1138
PpsI	GAGTC	2 cut(s)	282, 411
Ppu21I	YACGTR	2 cut(s)	839, 1138
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
PspCI	CACGTG	2 cut(s)	839, 1138
PspEI	GGTNACC	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	1171
RsaI	GTAC	2 cut(s)	128, 922
RsaNI	GTAC	2 cut(s)	127, 921
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	317, 495, 747
SatI	GCNGC	8 cut(s)	9, 17, 33, 69, 72, 570, 609, 612
Sau3AI	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	282, 412
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	3 cut(s)	183, 256, 414
SetI	ASST	7 cut(s)	117, 304, 571, 610, 753, 841, 1140
SfaNI	GCATC	5 cut(s)	295, 691, 720, 954, 1039
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	1085, 1121
SmoI	CTYRAG	2 cut(s)	1085, 1121
SsiI	CCGC	5 cut(s)	9, 17, 33, 69, 72
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	2 cut(s)	195, 1055
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	1164
TaaI	ACNGT	4 cut(s)	78, 126, 1026, 1110
TaiI	ACGT	2 cut(s)	841, 1140
TaqI	TCGA	3 cut(s)	236, 509, 963
TauI	GCSGC	5 cut(s)	11, 19, 35, 71, 74
TfiI	GAWTC	3 cut(s)	99, 697, 910
Tru1I	TTAA	3 cut(s)	317, 495, 747
Tru9I	TTAA	3 cut(s)	317, 495, 747
TscAI	CASTG	4 cut(s)	33, 276, 342, 1029
TseFI	GTSAC	1 cut(s)	1133
TseI	GCWGC	3 cut(s)	569, 608, 611
Tsp45I	GTSAC	1 cut(s)	1133
TspDTI	ATGAA	7 cut(s)	43, 283, 334, 372, 876, 1135, 1166
TspRI	CASTG	4 cut(s)	33, 276, 342, 1029
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	4 cut(s)	186, 238, 319, 757
XmiI	GTMKAC	1 cut(s)	1100
XmnI	GAANNNNTTC	1 cut(s)	1173
XspI	CTAG	2 cut(s)	195, 1055
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.