Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002885

Physical Location & Seq

Genomic Coordinates Forward (+)

35833923 .. 35835727

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAATAAGAAGCTGCTACTTGAAACACCATCAGAACAATCACGGTTGTTAAATGAGGTTCCGGAAGTAATTGCAGCCATAGAAAAATGTGATCCTGTTCTTGAGTACTCCCGAAGCCAGGATAAACAAGGAAATGATGGCTCTTCCGAATCTGCCCCCAGAGAATCCCCTCAAACACCCGGCACTGCTCTAGCCAATGGAACCTCATGGCGTGCAAATGGCAGAACAGATCCTGCAGGTTCACAGCTAGACCAGGAGAGAGACCTGGAGGGTGCAGCAGCTAAACATAAGAGAAAGCAGGCTTCATCAAACTTTGAACAGAGCTCTAGTATAGATGGTTCAAATGTTGACCATGAGAGAGACCTGCAAGATGCAAAGGATAGATCTCAGAGAAAGAAGGTTCCTACAATTCATGACTGCAAGCAGTCTCCTTGCATTCCATCTGGTCAGGCAGCAGAACAAGTGGAACCTAAAGTAGCTCGACTAGAAAGGATGAACTGTGAAAGCACATCTGAAGGTAAGGTAATTGAGTTGAGCGATGACGATGATGATGTAATGGTTTCAGTTAAAACACCTGCACTTGAAGTCCCAGGTTCTGATTTATGGTATTGTATGAGTCCACTTGGTGAAATGAGGGGCCCCTATAAATTGTCATTGCTAAAGCTATGGAACGTCTCGAGTGGCAATGAATTAAGATACAAGGTTTGGAGAGCGGGTCAGAGCAAAGACGAGGCAATCTTTCTTAATGATGCCATTCACGGAAATTTTCCACCATGTAGAAGAAATGCTTCCAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

267

Amino Acids

29.38

Weight (kDa)

5.43

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63700 AT5G63700
fragaria_vesca	FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310
malus_domestica	MD15G1440700.v1.1
prunus_persica	Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1
pyrus_communis	pycom15g38850
rosa_chinensis	RchiOBHm_Chr6g0272281 RchiOBHm_Chr6g0272291
rosa_laevigata	RLG00000013684 RLG00000013685
rosa_multiflora	Rmu_co8463891.1_g000001 Rmu_sc0004424.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196450
rosa_rugosa	Rorug06G0067400
rosa_samantha	Rh6AG184100 Rh6BG187300 Rh6CG185600 Rh6DG177400
rosa_wichuraiana	Rw6G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
Acc36I	ACCTGC	3 cut(s)	227, 372, 583
AccBSI	CCGCTC	1 cut(s)	713
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	1 cut(s)	713
AclWI	GGATC	2 cut(s)	86, 224
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	1 cut(s)	534
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	23, 317, 342, 584
AjnI	CCWGG	4 cut(s)	117, 252, 264, 589
AluBI	AGCT	6 cut(s)	13, 247, 281, 324, 479, 664
AluI	AGCT	6 cut(s)	13, 247, 281, 324, 479, 664
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	4 cut(s)	255, 354, 432, 679
AlwI	GGATC	2 cut(s)	86, 224
AlwNI	CAGNNNCTG	2 cut(s)	233, 596
Ama87I	CYCGRG	1 cut(s)	676
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	1 cut(s)	637
ApaI	GGGCCC	1 cut(s)	641
ApeKI	GCWGC	5 cut(s)	13, 74, 275, 278, 452
ApoI	RAATTY	1 cut(s)	763
Asp700I	GAANNNNTTC	1 cut(s)	787
AspS9I	GGNCC	2 cut(s)	637, 638
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	638
AvaI	CYCGRG	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	326, 641
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	4 cut(s)	86, 287, 290, 464
BccI	CCATC	4 cut(s)	37, 131, 329, 448
BciT130I	CCWGG	4 cut(s)	119, 254, 266, 591
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	4 cut(s)	255, 354, 432, 679
BfaI	CTAG	4 cut(s)	191, 248, 327, 485
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	3 cut(s)	227, 372, 583
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	5 cut(s)	14, 75, 276, 279, 453
BlsI	GCNGC	5 cut(s)	15, 76, 277, 280, 454
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	5 cut(s)	119, 180, 254, 266, 591
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	637, 638
BmiI	GGNNCC	7 cut(s)	60, 202, 402, 468, 638, 639, 640
BmrFI	CCNGG	5 cut(s)	119, 180, 254, 266, 591
BmsI	GCATC	2 cut(s)	361, 739
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	180
BsaI	GGTCTC	2 cut(s)	255, 354
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	653, 691
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	4 cut(s)	119, 254, 266, 591
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	2 cut(s)	653, 691
BseMII	CTCAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	4 cut(s)	86, 287, 290, 464
BsgI	GTGCAG	2 cut(s)	294, 561
BshFI	GGCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	2 cut(s)	62, 180
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	4 cut(s)	255, 354, 432, 679
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	639
Bso31I	GGTCTC	2 cut(s)	255, 354
BsoBI	CYCGRG	1 cut(s)	676
Bsp120I	GGGCCC	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	326, 641
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	91, 229, 383
BspACI	CCGC	1 cut(s)	713
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	400
BspEI	TCCGGA	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	7 cut(s)	60, 202, 402, 468, 638, 639, 640
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	3 cut(s)	227, 372, 583
BspPI	GGATC	2 cut(s)	86, 224
BspQI	GCTCTTC	1 cut(s)	148
BspTNI	GGTCTC	2 cut(s)	255, 354
BsrBI	CCGCTC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	653, 691
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	3 cut(s)	91, 229, 383
Bst2UI	CCWGG	4 cut(s)	119, 254, 266, 591
Bst4CI	ACNGT	2 cut(s)	45, 500
Bst6I	CTCTTC	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	213, 300, 422
BstDEI	CTNAG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	3 cut(s)	94, 232, 386
BstMAI	GTCTC	4 cut(s)	255, 354, 432, 679
BstMBI	GATC	3 cut(s)	91, 229, 383
BstNI	CCWGG	4 cut(s)	119, 254, 266, 591
BstSCI	CCNGG	5 cut(s)	117, 178, 252, 264, 589
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	641
BstV1I	GCAGC	4 cut(s)	86, 287, 290, 464
BstX2I	RGATCY	2 cut(s)	229, 383
BstYI	RGATCY	2 cut(s)	229, 383
BsuRI	GGCC	1 cut(s)	639
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	3 cut(s)	227, 372, 583
Cac8I	GCNNGC	3 cut(s)	213, 300, 422
CaiI	CAGNNNCTG	2 cut(s)	233, 596
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	637, 638
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	4 cut(s)	207, 353, 413, 774
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	93, 231, 385
DpnII	GATC	3 cut(s)	91, 229, 383
DraIII	CACNNNGTG	1 cut(s)	626
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	326, 641
Eco31I	GGTCTC	2 cut(s)	255, 354
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	676
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	2 cut(s)	637, 638
EcoRII	CCWGG	4 cut(s)	117, 252, 264, 589
EcoT38I	GRGCYC	2 cut(s)	326, 641
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	4 cut(s)	210, 356, 416, 777
FalI	AAGNNNNNCTT	1 cut(s)	772
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	4 cut(s)	206, 352, 412, 773
FauI	CCCGC	1 cut(s)	706
Fnu4HI	GCNGC	5 cut(s)	14, 75, 276, 279, 453
FokI	GGATG	1 cut(s)	505
FriOI	GRGCYC	2 cut(s)	326, 641
Fsp4HI	GCNGC	5 cut(s)	14, 75, 276, 279, 453
FspBI	CTAG	4 cut(s)	191, 248, 327, 485
GluI	GCNGC	5 cut(s)	14, 75, 276, 279, 453
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	2 cut(s)	62, 180
Hin1II	CATG	4 cut(s)	210, 356, 416, 777
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	149, 164, 616
HpaII	CCGG	2 cut(s)	62, 180
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	3 cut(s)	242, 349, 620
Hpy188I	TCNGA	6 cut(s)	34, 148, 390, 514, 598, 720
Hpy188III	TCNNGA	5 cut(s)	62, 101, 111, 413, 676
Hpy8I	GTNNAC	3 cut(s)	242, 349, 620
HpyAV	CCTTC	2 cut(s)	391, 509
HpyCH4III	ACNGT	2 cut(s)	45, 500
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	9 cut(s)	74, 215, 236, 275, 367, 374, 420, 435, 578
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	4 cut(s)	210, 356, 416, 777
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	91, 229, 383
LguI	GCTCTTC	1 cut(s)	148
Lsp1109I	GCAGC	4 cut(s)	86, 287, 290, 464
LweI	GCATC	2 cut(s)	361, 739
MaeI	CTAG	4 cut(s)	191, 248, 327, 485
MaeII	ACGT	1 cut(s)	672
MalI	GATC	3 cut(s)	93, 231, 385
MbiI	CCGCTC	1 cut(s)	713
MboI	GATC	3 cut(s)	91, 229, 383
MboII	GAAGA	2 cut(s)	135, 792
MflI	RGATCY	2 cut(s)	229, 383
MhlI	GDGCHC	2 cut(s)	326, 641
MluCI	AATT	7 cut(s)	69, 408, 525, 647, 689, 763, 794
MlyI	GAGTC	1 cut(s)	625
MnlI	CCTC	6 cut(s)	49, 180, 214, 262, 627, 724
MroI	TCCGGA	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	787
MseI	TTAA	4 cut(s)	50, 567, 692, 744
MspI	CCGG	2 cut(s)	62, 180
MspR9I	CCNGG	5 cut(s)	119, 180, 254, 266, 591
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	4 cut(s)	119, 254, 266, 591
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	91, 229, 383
NlaIII	CATG	4 cut(s)	210, 356, 416, 777
NlaIV	GGNNCC	7 cut(s)	60, 202, 402, 468, 638, 639, 640
PaeR7I	CTCGAG	1 cut(s)	676
PagI	TCATGA	1 cut(s)	412
PaqCI	CACCTGC	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	148
PctI	GAATGC	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	787
PfeI	GAWTC	2 cut(s)	149, 164
PkrI	GCNGC	5 cut(s)	15, 76, 277, 280, 454
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	326
Psp6I	CCWGG	4 cut(s)	117, 252, 264, 589
PspGI	CCWGG	4 cut(s)	117, 252, 264, 589
PspN4I	GGNNCC	7 cut(s)	60, 202, 402, 468, 638, 639, 640
PspOMI	GGGCCC	1 cut(s)	637
PspPI	GGNCC	2 cut(s)	637, 638
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	2 cut(s)	233, 596
PsuI	RGATCY	2 cut(s)	229, 383
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	4 cut(s)	50, 567, 692, 744
SatI	GCNGC	5 cut(s)	14, 75, 276, 279, 453
Sau3AI	GATC	3 cut(s)	91, 229, 383
Sau96I	GGNCC	2 cut(s)	637, 638
SbfI	CCTGCAGG	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	5 cut(s)	119, 180, 254, 266, 591
SdaI	CCTGCAGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	326, 641
SfaNI	GCATC	2 cut(s)	361, 739
SfcI	CTRYAG	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	676
SlaI	CTCGAG	1 cut(s)	676
SmlI	CTYRAG	2 cut(s)	101, 676
SmoI	CTYRAG	2 cut(s)	101, 676
Sse8387I	CCTGCAGG	1 cut(s)	238
Sse9I	AATT	7 cut(s)	69, 408, 525, 647, 689, 763, 794
SsiI	CCGC	1 cut(s)	713
SspMI	CTAG	4 cut(s)	191, 248, 327, 485
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	5 cut(s)	117, 178, 252, 264, 589
TaaI	ACNGT	2 cut(s)	45, 500
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	481, 677
TasI	AATT	7 cut(s)	69, 408, 525, 647, 689, 763, 794
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	149, 164
Tru1I	TTAA	4 cut(s)	50, 567, 692, 744
Tru9I	TTAA	4 cut(s)	50, 567, 692, 744
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	5 cut(s)	13, 74, 275, 278, 452
TspDTI	ATGAA	5 cut(s)	17, 294, 401, 509, 702
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	763
XhoI	CTCGAG	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	787
XspI	CTAG	4 cut(s)	191, 248, 327, 485
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.