RchiOBHm_Chr6g0272281

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
32476767 .. 32479958
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24427

Sequence Viewer

Length: 1266 bp
ATGAAACCTATTTTCATATGTTTGCAACATGAACATAAATATGACCTTTCCCATATCAATTTTTTTTTGTGGGGGGGGGGTGCTCGTATCTTTAGGTTTTATTTGGATAAGAAAGAATGTGAGGTTGACTACCTCCTCCAGATAAGAAACTTTGCTATTTTTTTTATTGATACCCAGAAATCCCCGCTACCCACATTATGGACCTGCAGCTTTGGCTGCGGCTTCCTCCTGTACTGTACAATCTCTAGGAGACAGAAAACTATAACAAATAGCAATAAGTGGACCATTTATTGGAAAAGGTTCTGTTCTGTGTTACCTCATGGTTTTGATGTTTCTATTAGTTCAGGATTACAGGGGTACCTATTTGTTTGTATTGCCTTCAGGTTTCCTTATGATGTGATTTGTTGTGTTCTTGCTAGTAATAAAGTGAACCTTGACCAATATTTTCTGTATACGCTTGATGCGTACATGAATAAGAAGCTGCTACTTGAAACACCATCAGAACAATCACGGCTGTTAAATGAGGTTCCGGAAGTAATTGCAGCCATAGAAAAATGTGATCCTGTTCTTGAGTACTCCAGAAGCCAGGATAAACAAGGAAATGATGGCTCTTCCGAATCTGCCCCCAGAGAATCTCCTCAAACTCCCGGCACTGCTCTAGCCAATGGAACCTCATGGCGTGCAAATGGCAGAACAGATCCTGCAGGTTCACTGCTAGACCAGGAGAGAGACCTGGAGGGTGCAGCAGCTAAACGTAAGAGAAAGCAGGCTTCAGCAAACTTTGAACAGAGCTCTAGTATAGATGGTTCAAATGGTGACCATGAGAGAGACCTGGAAGATGCAAAGGATAGATCTAGGAGAAAGAAAGTTCCTACGATTCATGACTGCAAGCAGTCTCCTTGCATTCCATCTGGTCAGGCAGCAGAACTAGAGGAACCTAAAGTAGCTCGACTAGAAAGGATGAACTGTGAAAGCACATCTGAAGTTAAGGTAATTGAGTTGAGCGATAACGATGAAGATGTAATTGTTTCAGTTAAAACACCTGCACTTGAAGTCCCAGGTTCTGATTTATGGTATTGTATGAGTCCACTTGGTGAAATGAGGGGCCCCTATAAATTGTCATTGCTAAAGCTATGGAGCGTCTCGAGTGGCAATGAATTAAGATACAAGGTTTGGAGAGTGGGTCAGAGCAAAGAGGAGGCAATCTTTCTCAATGATGCCATTCACGGAAATTTTCCAACATGTAGAAATGCTTCCAAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

47.68

Weight (kDa)

6.67

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1051
Acc36I ACCTGC 3 cut(s) 212, 695, 1051
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccB7I CCANNNNNTGG 2 cut(s) 198, 291
AccI GTMKAC 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 2 cut(s) 185, 219
AclWI GGATC 2 cut(s) 554, 692
AcsI RAATTY 1 cut(s) 1231
AcuI CTGAAG 3 cut(s) 364, 756, 1002
AdeI CACNNNGTG 1 cut(s) 1094
AfaI GTAC 5 cut(s) 233, 238, 359, 467, 575
AfiI CCNNNNNNNGG 2 cut(s) 198, 291
AflIII ACRYGT 1 cut(s) 1241
AgsI TTSAA 4 cut(s) 491, 785, 810, 1052
AjnI CCWGG 5 cut(s) 585, 720, 732, 831, 1057
AluBI AGCT 6 cut(s) 210, 481, 749, 792, 947, 1132
AluI AGCT 6 cut(s) 210, 481, 749, 792, 947, 1132
Alw21I GWGCWC 2 cut(s) 85, 794
Alw26I GTCTC 5 cut(s) 244, 723, 822, 900, 1147
AlwI GGATC 2 cut(s) 554, 692
AlwNI CAGNNNCTG 2 cut(s) 701, 1064
Ama87I CYCGRG 1 cut(s) 1144
Aor13HI TCCGGA 1 cut(s) 529
AoxI GGCC 1 cut(s) 1105
ApaI GGGCCC 1 cut(s) 1109
ApeKI GCWGC 7 cut(s) 207, 216, 481, 542, 743, 746, 920
ApoI RAATTY 1 cut(s) 1231
Asp700I GAANNNNTTC 2 cut(s) 299, 1252
Asp718I GGTACC 1 cut(s) 357
AspS9I GGNCC 4 cut(s) 201, 282, 1105, 1106
AsuC2I CCSGG 1 cut(s) 648
AsuHPI GGTGA 2 cut(s) 827, 1106
AvaI CYCGRG 1 cut(s) 1144
AvaII GGWCC 2 cut(s) 201, 282
BaeGI GKGCMC 1 cut(s) 1109
BaeI ACNNNNGTAYC 2 cut(s) 341, 374
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 794, 1109
BarI GAAGNNNNNNTAC 1 cut(s) 1237
Bbv12I GWGCWC 2 cut(s) 85, 794
BbvI GCAGC 7 cut(s) 203, 219, 468, 554, 755, 758, 932
BccI CCATC 4 cut(s) 505, 599, 797, 916
BceAI ACGGC 1 cut(s) 527
BciT130I CCWGG 5 cut(s) 587, 722, 734, 833, 1059
BcnI CCSGG 1 cut(s) 648
BcoDI GTCTC 5 cut(s) 244, 723, 822, 900, 1147
BfaI CTAG 8 cut(s) 246, 417, 659, 716, 795, 855, 929, 953
BfmI CTRYAG 2 cut(s) 205, 702
BfuAI ACCTGC 3 cut(s) 212, 695, 1051
BglII AGATCT 1 cut(s) 851
BisI GCNGC 8 cut(s) 208, 217, 220, 482, 543, 744, 747, 921
BlsI GCNGC 8 cut(s) 209, 218, 221, 483, 544, 745, 748, 922
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 6 cut(s) 587, 648, 722, 734, 833, 1059
Bme18I GGWCC 2 cut(s) 201, 282
BmeT110I CYCGRG 1 cut(s) 1144
BmgT120I GGNCC 4 cut(s) 201, 282, 1105, 1106
BmiI GGNNCC 7 cut(s) 359, 528, 670, 936, 1106, 1107, 1108
BmrFI CCNGG 6 cut(s) 587, 648, 722, 734, 833, 1059
BmsI GCATC 3 cut(s) 451, 829, 1207
BpmI CTGGAG 3 cut(s) 122, 562, 755
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 648
BsaI GGTCTC 2 cut(s) 723, 822
BsaJI CCNNGG 1 cut(s) 1057
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 2 cut(s) 1168, 1198
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 291
Bse3DI GCAATG 2 cut(s) 1121, 1159
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 5 cut(s) 587, 722, 734, 833, 1059
BseDI CCNNGG 1 cut(s) 1057
BseGI GGATG 1 cut(s) 966
BseLI CCNNNNNNNGG 2 cut(s) 198, 291
BseMI GCAATG 2 cut(s) 1121, 1159
BseRI GAGGAG 3 cut(s) 125, 627, 1211
BseSI GKGCMC 1 cut(s) 1109
BseXI GCAGC 7 cut(s) 203, 219, 468, 554, 755, 758, 932
BsgI GTGCAG 2 cut(s) 762, 1029
BshFI GGCC 1 cut(s) 1107
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 85, 794
BsiHKCI CYCGRG 1 cut(s) 1144
BsiSI CCGG 2 cut(s) 530, 648
BslFI GGGAC 1 cut(s) 1040
BslI CCNNNNNNNGG 2 cut(s) 198, 291
BsmAI GTCTC 5 cut(s) 244, 723, 822, 900, 1147
BsmBI CGTCTC 1 cut(s) 1147
BsmFI GGGAC 1 cut(s) 1040
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 1 cut(s) 1107
Bso31I GGTCTC 2 cut(s) 723, 822
BsoBI CYCGRG 1 cut(s) 1144
Bsp120I GGGCCC 1 cut(s) 1105
Bsp1286I GDGCHC 3 cut(s) 85, 794, 1109
Bsp13I TCCGGA 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 236
Bsp143I GATC 3 cut(s) 559, 697, 851
BspACI CCGC 2 cut(s) 185, 219
BspANI GGCC 1 cut(s) 1107
BspEI TCCGGA 1 cut(s) 529
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 7 cut(s) 359, 528, 670, 936, 1106, 1107, 1108
BspMAI CTGCAG 2 cut(s) 209, 706
BspMI ACCTGC 3 cut(s) 212, 695, 1051
BspPI GGATC 2 cut(s) 554, 692
BspQI GCTCTTC 1 cut(s) 616
BspT107I GGYRCC 1 cut(s) 357
BspTNI GGTCTC 2 cut(s) 723, 822
BsrDI GCAATG 2 cut(s) 1121, 1159
BsrGI TGTACA 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 1057
BssMI GATC 3 cut(s) 559, 697, 851
BssNAI GTATAC 1 cut(s) 453
Bst1107I GTATAC 1 cut(s) 453
Bst2UI CCWGG 5 cut(s) 587, 722, 734, 833, 1059
Bst4CI ACNGT 2 cut(s) 236, 968
Bst6I CTCTTC 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 681, 768, 890
BstEII GGTNACC 1 cut(s) 815
BstF5I GGATG 1 cut(s) 966
BstKTI GATC 3 cut(s) 562, 700, 854
BstMAI GTCTC 5 cut(s) 244, 723, 822, 900, 1147
BstMBI GATC 3 cut(s) 559, 697, 851
BstMWI GCNNNNNNNGC 2 cut(s) 213, 216
BstNI CCWGG 5 cut(s) 587, 722, 734, 833, 1059
BstNSI RCATGY 1 cut(s) 1245
BstPI GGTNACC 1 cut(s) 815
BstSCI CCNGG 6 cut(s) 585, 646, 720, 732, 831, 1057
BstSFI CTRYAG 2 cut(s) 205, 702
BstSLI GKGCMC 1 cut(s) 1109
BstV1I GCAGC 7 cut(s) 203, 219, 468, 554, 755, 758, 932
BstX2I RGATCY 2 cut(s) 697, 851
BstYI RGATCY 2 cut(s) 697, 851
BstZ17I GTATAC 1 cut(s) 453
BsuRI GGCC 1 cut(s) 1107
BtsCI GGATG 1 cut(s) 966
BtsI GCAGTG 2 cut(s) 651, 710
BtsIMutI CAGTG 2 cut(s) 651, 710
BveI ACCTGC 3 cut(s) 212, 695, 1051
Cac8I GCNNGC 3 cut(s) 681, 768, 890
CaiI CAGNNNCTG 2 cut(s) 701, 1064
CciI TCATGA 1 cut(s) 880
Cfr13I GGNCC 4 cut(s) 201, 282, 1105, 1106
CseI GACGC 1 cut(s) 1129
Csp6I GTAC 5 cut(s) 232, 237, 358, 466, 574
CviAII CATG 7 cut(s) 29, 320, 469, 675, 821, 881, 1242
CviQI GTAC 5 cut(s) 232, 237, 358, 466, 574
DpnI GATC 3 cut(s) 561, 699, 853
DpnII GATC 3 cut(s) 559, 697, 851
DraIII CACNNNGTG 1 cut(s) 1094
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 792
Eco24I GRGCYC 2 cut(s) 794, 1109
Eco31I GGTCTC 2 cut(s) 723, 822
Eco47I GGWCC 2 cut(s) 201, 282
Eco53kI GAGCTC 1 cut(s) 792
Eco57I CTGAAG 3 cut(s) 364, 756, 1002
Eco88I CYCGRG 1 cut(s) 1144
Eco91I GGTNACC 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 792
EcoO109I RGGNCCY 2 cut(s) 1105, 1106
EcoO65I GGTNACC 1 cut(s) 815
EcoRII CCWGG 5 cut(s) 585, 720, 732, 831, 1057
EcoT38I GRGCYC 2 cut(s) 794, 1109
Esp3I CGTCTC 1 cut(s) 1147
FaeI CATG 7 cut(s) 32, 323, 472, 678, 824, 884, 1245
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 1040
FatI CATG 7 cut(s) 28, 319, 468, 674, 820, 880, 1241
FauI CCCGC 1 cut(s) 192
FauNDI CATATG 1 cut(s) 17
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 8 cut(s) 208, 217, 220, 482, 543, 744, 747, 921
FokI GGATG 1 cut(s) 973
FriOI GRGCYC 2 cut(s) 794, 1109
Fsp4HI GCNGC 8 cut(s) 208, 217, 220, 482, 543, 744, 747, 921
FspBI CTAG 8 cut(s) 246, 417, 659, 716, 795, 855, 929, 953
GluI GCNGC 8 cut(s) 208, 217, 220, 482, 543, 744, 747, 921
GsuI CTGGAG 3 cut(s) 122, 562, 755
HaeIII GGCC 1 cut(s) 1107
HapII CCGG 2 cut(s) 530, 648
HgaI GACGC 1 cut(s) 1129
Hin1II CATG 7 cut(s) 32, 323, 472, 678, 824, 884, 1245
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 617, 632, 877, 1084
HpaII CCGG 2 cut(s) 530, 648
HphI GGTGA 2 cut(s) 827, 1106
Hpy166II GTNNAC 6 cut(s) 127, 282, 430, 453, 710, 1088
Hpy188I TCNGA 5 cut(s) 502, 616, 982, 1066, 1188
Hpy188III TCNNGA 7 cut(s) 139, 345, 530, 569, 579, 881, 1144
Hpy8I GTNNAC 6 cut(s) 127, 282, 430, 453, 710, 1088
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 2 cut(s) 236, 968
HpyCH4IV ACGT 1 cut(s) 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 216
HpySE526I ACGT 1 cut(s) 754
Hsp92II CATG 7 cut(s) 32, 323, 472, 678, 824, 884, 1245
Kpn2I TCCGGA 1 cut(s) 529
KpnI GGTACC 1 cut(s) 361
Kzo9I GATC 3 cut(s) 559, 697, 851
LguI GCTCTTC 1 cut(s) 616
LmnI GCTCC 1 cut(s) 1137
Lsp1109I GCAGC 7 cut(s) 203, 219, 468, 554, 755, 758, 932
LweI GCATC 3 cut(s) 451, 829, 1207
MaeI CTAG 8 cut(s) 246, 417, 659, 716, 795, 855, 929, 953
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 2 cut(s) 312, 815
MalI GATC 3 cut(s) 561, 699, 853
MboI GATC 3 cut(s) 559, 697, 851
MboII GAAGA 3 cut(s) 603, 848, 1028
MflI RGATCY 2 cut(s) 697, 851
MhlI GDGCHC 3 cut(s) 85, 794, 1109
MluCI AATT 8 cut(s) 58, 537, 993, 1023, 1115, 1157, 1231, 1259
MlyI GAGTC 1 cut(s) 1093
MmeI TCCRAC 1 cut(s) 1262
MroI TCCGGA 1 cut(s) 529
MroXI GAANNNNTTC 2 cut(s) 299, 1252
MseI TTAA 4 cut(s) 518, 987, 1035, 1160
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 2 cut(s) 530, 648
MspR9I CCNGG 6 cut(s) 587, 648, 722, 734, 833, 1059
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 5 cut(s) 587, 722, 734, 833, 1059
MwoI GCNNNNNNNGC 2 cut(s) 213, 216
NciI CCSGG 1 cut(s) 648
NdeI CATATG 1 cut(s) 17
NdeII GATC 3 cut(s) 559, 697, 851
NlaIII CATG 7 cut(s) 32, 323, 472, 678, 824, 884, 1245
NlaIV GGNNCC 7 cut(s) 359, 528, 670, 936, 1106, 1107, 1108
NmuCI GTSAC 1 cut(s) 815
NspI RCATGY 1 cut(s) 1245
PaeR7I CTCGAG 1 cut(s) 1144
PagI TCATGA 1 cut(s) 880
PaqCI CACCTGC 1 cut(s) 1051
PciI ACATGT 1 cut(s) 1241
PciSI GCTCTTC 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 461
PctI GAATGC 1 cut(s) 903
PdmI GAANNNNTTC 2 cut(s) 299, 1252
PfeI GAWTC 3 cut(s) 617, 632, 877
PflMI CCANNNNNTGG 2 cut(s) 198, 291
PkrI GCNGC 8 cut(s) 209, 218, 221, 483, 544, 745, 748, 922
PleI GAGTC 1 cut(s) 1092
PpsI GAGTC 1 cut(s) 1092
PscI ACATGT 1 cut(s) 1241
Psp124BI GAGCTC 1 cut(s) 794
Psp6I CCWGG 5 cut(s) 585, 720, 732, 831, 1057
PspEI GGTNACC 1 cut(s) 815
PspGI CCWGG 5 cut(s) 585, 720, 732, 831, 1057
PspN4I GGNNCC 7 cut(s) 359, 528, 670, 936, 1106, 1107, 1108
PspOMI GGGCCC 1 cut(s) 1105
PspPI GGNCC 4 cut(s) 201, 282, 1105, 1106
PsrI GAACNNNNNNTAC 2 cut(s) 790, 822
PstI CTGCAG 2 cut(s) 209, 706
PstNI CAGNNNCTG 2 cut(s) 701, 1064
PsuI RGATCY 2 cut(s) 697, 851
RsaI GTAC 5 cut(s) 233, 238, 359, 467, 575
RsaNI GTAC 5 cut(s) 232, 237, 358, 466, 574
RseI CAYNNNNRTG 1 cut(s) 39
SacI GAGCTC 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 616
SaqAI TTAA 4 cut(s) 518, 987, 1035, 1160
SatI GCNGC 8 cut(s) 208, 217, 220, 482, 543, 744, 747, 921
Sau3AI GATC 3 cut(s) 559, 697, 851
Sau96I GGNCC 4 cut(s) 201, 282, 1105, 1106
SbfI CCTGCAGG 1 cut(s) 706
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 1 cut(s) 1093
ScrFI CCNGG 6 cut(s) 587, 648, 722, 734, 833, 1059
SdaI CCTGCAGG 1 cut(s) 706
SduI GDGCHC 3 cut(s) 85, 794, 1109
SfaNI GCATC 3 cut(s) 451, 829, 1207
SfcI CTRYAG 2 cut(s) 205, 702
Sfr274I CTCGAG 1 cut(s) 1144
SinI GGWCC 2 cut(s) 201, 282
SlaI CTCGAG 1 cut(s) 1144
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 569, 1144
SmoI CTYRAG 2 cut(s) 569, 1144
Sse8387I CCTGCAGG 1 cut(s) 706
Sse9I AATT 8 cut(s) 58, 537, 993, 1023, 1115, 1157, 1231, 1259
SsiI CCGC 2 cut(s) 185, 219
SspI AATATT 1 cut(s) 443
SspMI CTAG 8 cut(s) 246, 417, 659, 716, 795, 855, 929, 953
SstI GAGCTC 1 cut(s) 794
StyD4I CCNGG 6 cut(s) 585, 646, 720, 732, 831, 1057
TaaI ACNGT 2 cut(s) 236, 968
TaiI ACGT 1 cut(s) 757
TaqI TCGA 2 cut(s) 949, 1145
TasI AATT 8 cut(s) 58, 537, 993, 1023, 1115, 1157, 1231, 1259
TatI WGTACW 3 cut(s) 231, 236, 573
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 3 cut(s) 617, 632, 877
Tru1I TTAA 4 cut(s) 518, 987, 1035, 1160
Tru9I TTAA 4 cut(s) 518, 987, 1035, 1160
TscAI CASTG 2 cut(s) 658, 717
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 7 cut(s) 207, 216, 481, 542, 743, 746, 920
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 8 cut(s) 4, 17, 45, 485, 869, 977, 1029, 1170
TspGWI ACGGA 1 cut(s) 1242
TspRI CASTG 2 cut(s) 658, 717
Van91I CCANNNNNTGG 2 cut(s) 198, 291
VpaK11BI GGWCC 2 cut(s) 201, 282
XapI RAATTY 1 cut(s) 1231
XceI RCATGY 1 cut(s) 1245
XhoI CTCGAG 1 cut(s) 1144
XmiI GTMKAC 1 cut(s) 452
XmnI GAANNNNTTC 2 cut(s) 299, 1252
XspI CTAG 8 cut(s) 246, 417, 659, 716, 795, 855, 929, 953
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.