AT5G63700

Plus-3 domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
25493707 .. 25497764
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63700.2

Sequence Viewer

Length: 1809 bp
ATGGCGAGAGATATGAATGTAGTGGAGATTTTGGATGATGAGGAGGAGGATGAGAAGGAGTGTGAGGATTGGTGCTTTATCTGTAAAGATGGTGGAAACCTAATGCTCTGTGACTTCAAAGACTGTCCAAAAGTTTATCATGAAAGTTGCGTTGAAAAGGATAGCTCAGCAAGCAAGAATGGAGACTCGTATATCTGTATGTGGCACAGTTGCTACTTGTGTAAGAAAACACCAAAGCTATGCTGCCTTTGTTGCTCACATGCTGTATGTGAAGGCTGTGTCACTCATGCTGAGTTTATTCAACTTAAAGGGGATAAAGGGTTATGCAATCAATGCCAGGAGTATGTCTTTGCTTTAGAAGAAATTCAAGAATATGATGCTGCTGGGGATAAGCTTGACTTGACAGATCGGAATACATTTGAGTGTCTGTTTCTTGAGTATTGGGAAATTGCGAAAAAACAAGAAGGTCTAACTTTTGACGATGTCCGCAAGGTCTGCGCTTCAAAGCCACAAAAGAAAGGTGTCAAGTCAAAGTACAAAGATGATCCCAAATTTTCGCTTGGTGATGTCCACACTTCAAAGTCACAAAAGAAAGGCGACAAGCTGAAGAACAAAGATGATCCCAAATTTGCGCTTGGTGATGCCCACACTTCAAAGTCAGGAAAGAAAGGCGTCAAGCTGAAGAACAAAGATGATCCCAAATTTTTAGTATCTGACCATGCGGTTGAAGATGCAGTTGATTATAAAAAGGTTGGCAAAAACAAGAGAATGGAGTTTATCAGATGGGGTTCAAAGCCTCTCATTGATTTCCTAACGTCCATAGGGGAAGACACCAGAGAGGCAATGTCACAACATAGTGTTGAGTCAGTTATCCGCAGGTACATTCGTGAGAAAAACCTGCTTGACCGTGAAAAGAAGAAGAAAGTTCATTGTGATGAGAAGCTGTACTCTATCTTCAGGAAAAAGTCTATAAATCAGAAAAGGATTTATACACTTTTGAATACTCACCTGAAAGAAAACCTTGATCAGGTGGAGTATTTCACACCTTTGGAACTTGGCTTCATTGAAAAAAATGAAAAGCGATTCAGTGAAAAGAATGATAAGGTTATGATGCCGTGCAAGAAGCAAAAAACAGAAAGTTCAGATGACGAAATTTGTGAGAAGGAAGTGCAACCTGAAATGCGAGCAACTGGTTTCGCCACGATCAATGCAGATAATCTAAAGCTTGTTTATCTACGTAAGAGCTTAGTCTTAGAGTTGTTGAAGCAGAATGATAGCTTTGTGGACAAAGTGGTGGGAAGCTTTGTGAAAGTGAAGAATGGCCCTAGGGACTTTATGGCGTACCAGATCTTGCAGGTTACAGGCATTAAAAATGCTGATGATCAGAGTGAGGGCGTGCTTCTTCATGTTTCTGGTATGGCAAGTGGTGTTAGCATTTCCAAGCTGGATGATTCTGACATAAGAGAGGAAGAGATTAAAGATTTGAAGCAAAAAGTGATGAATGGTCTTCTGAGACAGACAACTGTTGTGGAGATGGAGCAGAAGGCTAAGGCTCTCCATTATGATATAACAAAACATTGGATTGCAAGGCAGCTTAACATTCTGCAGAAGCGCATCAACTGTGCTAATGAGAAAGGATGGAGAAGAGAATTAGAGGAGTATCTAGAGCAGAGAGAACTTCTGGAGAAACCTTCAGAGCAGGAGAGGTTACTAAAAGAAATTCCAAGGATCATTGAAGACTTCATCGAGATTAAACAAGAACCATGTGTCGGCGGTTTGTCACATGAGGCGGTTATAAATATCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

602

Amino Acids

69.48

Weight (kDa)

6.24

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 25 - 69 2.2e-07 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
SWIB PF02201 265 - 337 3e-11 SWIB/MDM2 domain
Plus-3 PF03126 406 - 499 6.4e-10 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 744, 1796
Acc36I ACCTGC 3 cut(s) 867, 906, 1345
AciI CCGC 5 cut(s) 487, 722, 874, 1773, 1790
AclWI GGATC 4 cut(s) 539, 614, 689, 1736
AcsI RAATTY 6 cut(s) 363, 551, 626, 701, 1152, 1719
AcuI CTGAAG 4 cut(s) 626, 701, 940, 1677
AcyI GRCGYC 1 cut(s) 672
AfaI GTAC 4 cut(s) 536, 881, 947, 1343
AfiI CCNNNNNNNGG 2 cut(s) 1027, 1769
AjnI CCWGG 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 177, 1507
AlwI GGATC 4 cut(s) 539, 614, 689, 1736
AoxI GGCC 1 cut(s) 1321
ApeKI GCWGC 3 cut(s) 243, 380, 1591
ApoI RAATTY 6 cut(s) 363, 551, 626, 701, 1152, 1719
Asp700I GAANNNNTTC 1 cut(s) 363
AspA2I CCTAGG 1 cut(s) 1325
AspLEI GCGC 3 cut(s) 500, 634, 1614
AspS9I GGNCC 1 cut(s) 1322
AsuHPI GGTGA 3 cut(s) 575, 650, 998
AvrII CCTAGG 1 cut(s) 1325
BaeI ACNNNNGTAYC 2 cut(s) 871, 904
BarI GAAGNNNNNNTAC 2 cut(s) 938, 970
BbsI GAAGAC 3 cut(s) 834, 1499, 1743
BbvI GCAGC 3 cut(s) 230, 367, 1603
BccI CCATC 4 cut(s) 83, 777, 1528, 1632
BceAI ACGGC 1 cut(s) 1099
BciT130I CCWGG 1 cut(s) 338
BclI TGATCA 2 cut(s) 1024, 1381
BcoDI GTCTC 2 cut(s) 177, 1507
BfaI CTAG 2 cut(s) 1326, 1664
BfmI CTRYAG 1 cut(s) 1604
BfuAI ACCTGC 3 cut(s) 867, 906, 1345
BglII AGATCT 1 cut(s) 1347
BisI GCNGC 3 cut(s) 244, 381, 1592
BlnI CCTAGG 1 cut(s) 1325
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 3 cut(s) 245, 382, 1593
Bme1390I CCNGG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 1322
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 5 cut(s) 367, 631, 721, 1101, 1623
BpiI GAAGAC 3 cut(s) 834, 1499, 1743
BpmI CTGGAG 1 cut(s) 1703
Bpu10I CCTNAGC 1 cut(s) 1548
Bpu1102I GCTNAGC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 455
Bsa29I ATCGAT 1 cut(s) 1803
BsaAI YACGTR 1 cut(s) 1238
BsaHI GRCGYC 1 cut(s) 672
BsaJI CCNNGG 2 cut(s) 1325, 1724
Bsc4I CCNNNNNNNGG 2 cut(s) 1027, 1769
Bse1I ACTGG 1 cut(s) 1195
Bse3DI GCAATG 1 cut(s) 849
BseBI CCWGG 1 cut(s) 338
BseCI ATCGAT 1 cut(s) 1803
BseDI CCNNGG 2 cut(s) 1325, 1724
BseGI GGATG 4 cut(s) 40, 55, 1453, 1643
BseLI CCNNNNNNNGG 2 cut(s) 1027, 1769
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 3 cut(s) 180, 282, 1502
BseNI ACTGG 1 cut(s) 1195
BseRI GAGGAG 3 cut(s) 56, 59, 1670
BseXI GCAGC 3 cut(s) 230, 367, 1603
BseYI CCCAGC 1 cut(s) 383
BshFI GGCC 1 cut(s) 1323
BshVI ATCGAT 1 cut(s) 1803
BslFI GGGAC 1 cut(s) 1343
BslI CCNNNNNNNGG 2 cut(s) 1027, 1769
BsmAI GTCTC 2 cut(s) 177, 1507
BsmFI GGGAC 1 cut(s) 1343
BsnI GGCC 1 cut(s) 1323
Bsp143I GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
Bsp1720I GCTNAGC 1 cut(s) 166
BspACI CCGC 5 cut(s) 487, 722, 874, 1773, 1790
BspANI GGCC 1 cut(s) 1323
BspCNI CTCAG 3 cut(s) 179, 283, 1503
BspDI ATCGAT 1 cut(s) 1803
BspHI TCATGA 1 cut(s) 139
BspMAI CTGCAG 1 cut(s) 1608
BspMI ACCTGC 3 cut(s) 867, 906, 1345
BspPI GGATC 4 cut(s) 539, 614, 689, 1736
BsrDI GCAATG 1 cut(s) 849
BsrI ACTGG 1 cut(s) 1195
BssECI CCNNGG 2 cut(s) 1325, 1724
BssMI GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
BssNI GRCGYC 1 cut(s) 672
BssT1I CCWWGG 2 cut(s) 1325, 1724
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 5 cut(s) 125, 209, 908, 1525, 1622
Bst6I CTCTTC 2 cut(s) 1464, 1639
BstACI GRCGYC 1 cut(s) 672
BstAPI GCANNNNNTGC 2 cut(s) 333, 495
BstBAI YACGTR 1 cut(s) 1238
BstC8I GCNNGC 3 cut(s) 172, 1185, 1397
BstDEI CTNAG 6 cut(s) 166, 291, 1246, 1252, 1511, 1548
BstENI CCTNNNNNAGG 1 cut(s) 1025
BstF5I GGATG 4 cut(s) 40, 55, 1453, 1643
BstHHI GCGC 3 cut(s) 500, 634, 1614
BstKTI GATC 9 cut(s) 409, 547, 622, 697, 1027, 1206, 1350, 1384, 1731
BstMAI GTCTC 2 cut(s) 177, 1507
BstMBI GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
BstMWI GCNNNNNNNGC 4 cut(s) 171, 252, 333, 495
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 1604
BstSNI TACGTA 1 cut(s) 1238
BstV1I GCAGC 3 cut(s) 230, 367, 1603
BstV2I GAAGAC 3 cut(s) 834, 1499, 1743
BstX2I RGATCY 1 cut(s) 1347
BstYI RGATCY 1 cut(s) 1347
Bsu15I ATCGAT 1 cut(s) 1803
BsuRI GGCC 1 cut(s) 1323
BsuTUI ATCGAT 1 cut(s) 1803
BtsCI GGATG 4 cut(s) 40, 55, 1453, 1643
BtsIMutI CAGTG 1 cut(s) 1093
BveI ACCTGC 3 cut(s) 867, 906, 1345
Cac8I GCNNGC 3 cut(s) 172, 1185, 1397
CciI TCATGA 1 cut(s) 139
CfoI GCGC 3 cut(s) 500, 634, 1614
Cfr13I GGNCC 1 cut(s) 1322
ClaI ATCGAT 1 cut(s) 1803
CseI GACGC 1 cut(s) 661
Csp6I GTAC 4 cut(s) 535, 880, 946, 1342
CspCI CAANNNNNGTGG 2 cut(s) 1509, 1544
CviAII CATG 7 cut(s) 140, 260, 287, 719, 1406, 1764, 1784
CviQI GTAC 4 cut(s) 535, 880, 946, 1342
DdeI CTNAG 6 cut(s) 166, 291, 1246, 1252, 1511, 1548
DpnI GATC 9 cut(s) 408, 546, 621, 696, 1026, 1205, 1349, 1383, 1730
DpnII GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
Eam1104I CTCTTC 2 cut(s) 1464, 1639
EarI CTCTTC 2 cut(s) 1464, 1639
Eco105I TACGTA 1 cut(s) 1238
Eco130I CCWWGG 2 cut(s) 1325, 1724
Eco57I CTGAAG 4 cut(s) 626, 701, 940, 1677
EcoNI CCTNNNNNAGG 1 cut(s) 1025
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 1325, 1724
ErhI CCWWGG 2 cut(s) 1325, 1724
FaeI CATG 7 cut(s) 143, 263, 290, 722, 1409, 1767, 1787
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 1005, 1037
FaqI GGGAC 1 cut(s) 1343
FatI CATG 7 cut(s) 139, 259, 286, 718, 1405, 1763, 1783
FbaI TGATCA 2 cut(s) 1024, 1381
Fnu4HI GCNGC 3 cut(s) 244, 381, 1592
FokI GGATG 4 cut(s) 47, 62, 1460, 1650
Fsp4HI GCNGC 3 cut(s) 244, 381, 1592
FspBI CTAG 2 cut(s) 1326, 1664
GlaI GCGC 3 cut(s) 499, 633, 1613
GluI GCNGC 3 cut(s) 244, 381, 1592
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 1703
HaeIII GGCC 1 cut(s) 1323
HgaI GACGC 1 cut(s) 661
HhaI GCGC 3 cut(s) 500, 634, 1614
Hin1I GRCGYC 1 cut(s) 672
Hin1II CATG 7 cut(s) 143, 263, 290, 722, 1409, 1767, 1787
Hin6I GCGC 3 cut(s) 498, 632, 1612
HinP1I GCGC 3 cut(s) 498, 632, 1612
HindIII AAGCTT 3 cut(s) 392, 1223, 1300
HinfI GANTC 4 cut(s) 185, 863, 1083, 1451
HphI GGTGA 3 cut(s) 575, 650, 998
Hpy166II GTNNAC 2 cut(s) 571, 1285
Hpy188I TCNGA 9 cut(s) 411, 715, 782, 978, 1144, 1386, 1456, 1512, 1696
Hpy188III TCNNGA 9 cut(s) 140, 368, 434, 660, 887, 958, 1664, 1682, 1747
Hpy8I GTNNAC 2 cut(s) 571, 1285
HpyAV CCTTC 6 cut(s) 49, 266, 458, 1156, 1537, 1701
HpyCH4III ACNGT 5 cut(s) 125, 209, 908, 1525, 1622
HpyCH4IV ACGT 2 cut(s) 815, 1237
HpyCH4V TGCA 8 cut(s) 327, 734, 1119, 1171, 1211, 1354, 1586, 1606
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 252, 333, 495
HpyF3I CTNAG 6 cut(s) 166, 291, 1246, 1252, 1511, 1548
HpySE526I ACGT 2 cut(s) 815, 1237
Hsp92I GRCGYC 1 cut(s) 672
Hsp92II CATG 7 cut(s) 143, 263, 290, 722, 1409, 1767, 1787
HspAI GCGC 3 cut(s) 498, 632, 1612
Ksp22I TGATCA 2 cut(s) 1024, 1381
Kzo9I GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
LmnI GCTCC 1 cut(s) 1537
Lsp1109I GCAGC 3 cut(s) 230, 367, 1603
LweI GCATC 5 cut(s) 367, 631, 721, 1101, 1623
MaeI CTAG 2 cut(s) 1326, 1664
MaeII ACGT 2 cut(s) 815, 1237
MaeIII GTNAC 7 cut(s) 110, 280, 582, 846, 1357, 1707, 1779
MalI GATC 9 cut(s) 408, 546, 621, 696, 1026, 1205, 1349, 1383, 1730
MboI GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
MflI RGATCY 1 cut(s) 1347
MluCI AATT 8 cut(s) 363, 447, 551, 626, 701, 1152, 1649, 1719
MlyI GAGTC 2 cut(s) 179, 872
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 6 cut(s) 306, 1368, 1476, 1596, 1752, 1807
MslI CAYNNNNRTG 2 cut(s) 421, 933
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 4 cut(s) 171, 252, 333, 495
NdeII GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
NlaIII CATG 7 cut(s) 143, 263, 290, 722, 1409, 1767, 1787
NmuCI GTSAC 5 cut(s) 110, 280, 582, 846, 1779
NspI RCATGY 1 cut(s) 263
PagI TCATGA 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 1083, 1451
PflFI GACNNNGTC 1 cut(s) 482
PkrI GCNGC 3 cut(s) 245, 382, 1593
PleI GAGTC 2 cut(s) 179, 871
PpsI GAGTC 2 cut(s) 179, 871
Ppu21I YACGTR 1 cut(s) 1238
PsiI TTATAA 2 cut(s) 744, 1796
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 336
PspPI GGNCC 1 cut(s) 1322
PstI CTGCAG 1 cut(s) 1608
PsuI RGATCY 1 cut(s) 1347
PsyI GACNNNGTC 1 cut(s) 482
RsaI GTAC 4 cut(s) 536, 881, 947, 1343
RsaNI GTAC 4 cut(s) 535, 880, 946, 1342
RseI CAYNNNNRTG 2 cut(s) 421, 933
SaqAI TTAA 6 cut(s) 306, 1368, 1476, 1596, 1752, 1807
SatI GCNGC 3 cut(s) 244, 381, 1592
Sau3AI GATC 9 cut(s) 406, 544, 619, 694, 1024, 1203, 1347, 1381, 1728
Sau96I GGNCC 1 cut(s) 1322
SchI GAGTC 2 cut(s) 179, 872
ScrFI CCNGG 1 cut(s) 338
SfaNI GCATC 5 cut(s) 367, 631, 721, 1101, 1623
SfcI CTRYAG 1 cut(s) 1604
SmiMI CAYNNNNRTG 2 cut(s) 421, 933
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SnaBI TACGTA 1 cut(s) 1238
Sse9I AATT 8 cut(s) 363, 447, 551, 626, 701, 1152, 1649, 1719
SsiI CCGC 5 cut(s) 487, 722, 874, 1773, 1790
SspMI CTAG 2 cut(s) 1326, 1664
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 1325, 1724
TaaI ACNGT 5 cut(s) 125, 209, 908, 1525, 1622
TaiI ACGT 2 cut(s) 818, 1240
TaqI TCGA 2 cut(s) 1746, 1803
TasI AATT 8 cut(s) 363, 447, 551, 626, 701, 1152, 1649, 1719
TatI WGTACW 2 cut(s) 534, 945
TfiI GAWTC 2 cut(s) 1083, 1451
Tru1I TTAA 6 cut(s) 306, 1368, 1476, 1596, 1752, 1807
Tru9I TTAA 6 cut(s) 306, 1368, 1476, 1596, 1752, 1807
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 5 cut(s) 110, 280, 582, 846, 1779
TseI GCWGC 3 cut(s) 243, 380, 1591
Tsp45I GTSAC 5 cut(s) 110, 280, 582, 846, 1779
TspDTI ATGAA 8 cut(s) 29, 156, 917, 1051, 1089, 1394, 1514, 1732
TspRI CASTG 1 cut(s) 1093
Tth111I GACNNNGTC 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 1025
XapI RAATTY 6 cut(s) 363, 551, 626, 701, 1152, 1719
XbaI TCTAGA 1 cut(s) 1663
XceI RCATGY 1 cut(s) 263
XmaJI CCTAGG 1 cut(s) 1325
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 2 cut(s) 1326, 1664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.