RchiOBHm_Chr6g0272291

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002885
Physical Location & Seq
Reverse (-)
32479960 .. 32486447
6488 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24428

Sequence Viewer

Length: 1590 bp
ATGCCGAGGAAGAGTAAAGCAAAGAAGGAAGAGATTTGCGAGGAGGTTTGCTTCTATTGCAAAGATGGAGGACTCCTCTTGGTCTGCGACTACAAGGGTTGTCTTAAAGCTTATCATCCGGAATGTGCGGGAAAAGATGACTCTTTTGTGGAGACTGCACGGCGCTGGAACTGCAAATGGCATTCTTGCTTCATGTGCCATAAGGCTGCAAAGTTTCAATGCTTTTGCTGCCCACAAGCTGTATGCGGACGCTGCCTCTGTGACTCTGAGTTTGCGGTTATTAAAGTGGATAAAGGATTTTGCAATCATTGCTTGAAGCTTGCTGTACTCATAGAAGAAAACTTGGATGCTGATTCTGACGGGGGCAGAGTTGACTTCAAAGATATAAACACATTCGAGTACTTATTTAAGGAGTATTGGCAGGTAATGAAAAAGAAAGAACGCTTGTCTGCAGAACATGTCTACTCTGCGAAAAAGTTATTAAAGAAGGGAAAGAATTACGTGTGTGACTTTGATTCGAGTATAATTTATAAGAAAGAAGAAAAATTTTCAGAATCCGATGAAGAAAGTGACCTTCAGGTGTCTGATTATGATGGAGTGGAAAGTGGAGAAGAATACATGCCAGTTGCCAAAAAGAAGAGATCCAAGGGAAAACAGTGTGCAGTGAAAAGAAAAGTAGAAGCAGAGAAACGAGAATTTATGGGATGGGGATCAAAGTCTCTCCTAGAATTTCTTGCTTCTATGGGTAAAGATACATCCAAGGAGTTGTCACAGTATGAAGTCACCTCTGTGGTTACAGACTATTGTAAAGAAAACAAGCTTTTTGACCCAGAAAAGAAGAAGAAAGTACTTTGCGATGCAACCTTGCAGTCTCTTTTAGGGAGGAAAACATTGAATAAAAATAGTATATATAACCTTCTGACTTCCCATTTTGCTGACAATCTGGAAGAGTCAACAGAGGGGGATGAGAGTGGAAGTAGTTCCGAAGACAAAGATGAGAGTTTTATGGGTACCTGTAAAAGGCAGATCAAGTTGAGCCCTAAAGTACCAGATGTGCAGAAAAGCTGTTTTGCTTCCATAGTTCCTGAAAACATCAAGCTTGTGTACCTGAAGAGGAGCTTAGTGGAGGAATTGTTAAAGCAACCTGAGACTTTTGGTGAGAAAGTAACAGGATGTTTTGTGAGAGTCAAATCTGACCCAAATGATTATTCACAGAAAAATTCTCACCAGCTCTTGCAAATTAAAGGTATAAAGGAAATTTTGAGGAACGGCAGAGAGGATACAGAAATACTTATGCAATTTTTCAGCAATTTTAAAGATTTACCTGTTTCCAAGCTGTCAGATGATGACTTCTGTAAGGAAGAATGTGAAGATTTGCATCAGAGAGTGAAAGATGGCCTCCTTAAAAAGCCAACTATTGTGGAGCTTGAACAGAAGGCTAGAAGTCTACATGAGAATATAACAAAGCACTGGCTTGCAAGAGAACTGACACTGTTGCAGAAGCGCATTGACCTGGCAAATGAAAAAGGATGGAGGAGAGAATATCCTTCTATTAAGTTAATTAATATAGCAACAAAGGTAGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GYF Plus-3 SWIB

Protein Analysis

529

Amino Acids

60.9

Weight (kDa)

7.84

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 239 - 311 1.3e-12 SWIB/MDM2 domain
SWIB_eIF2D PF26291 240 - 296 4.5e-07 eIF2D, SWIB domain
Plus-3 PF03126 364 - 463 2.6e-17 Plus-3 domain
NERD_plant PF25980 486 - 516 9e-15 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 412
Acc65I GGTACC 1 cut(s) 1010
AccB1I GGYRCC 1 cut(s) 1010
AccI GTMKAC 2 cut(s) 462, 1447
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 3 cut(s) 128, 246, 275
AclWI GGATC 2 cut(s) 636, 718
AcsI RAATTY 5 cut(s) 545, 695, 728, 1219, 1257
AcuI CTGAAG 2 cut(s) 560, 1130
AfaI GTAC 6 cut(s) 327, 401, 849, 1012, 1047, 1106
AfiI CCNNNNNNNGG 1 cut(s) 1020
AflIII ACRYGT 2 cut(s) 457, 501
AgsI TTSAA 5 cut(s) 218, 316, 379, 895, 1430
AjnI CCWGG 1 cut(s) 1512
AjuI GAANNNNNNNTTGG 2 cut(s) 1192, 1224
AleI CACNNNNGTG 1 cut(s) 788
Alw26I GTCTC 4 cut(s) 146, 723, 876, 1142
AlwI GGATC 2 cut(s) 636, 718
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 1396
ApeKI GCWGC 3 cut(s) 206, 228, 252
ApoI RAATTY 5 cut(s) 545, 695, 728, 1219, 1257
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AseI ATTAAT 1 cut(s) 1563
Asp700I GAANNNNTTC 1 cut(s) 979
Asp718I GGTACC 1 cut(s) 1010
AspLEI GCGC 2 cut(s) 165, 1506
AsuHPI GGTGA 3 cut(s) 775, 1169, 1217
BanI GGYRCC 1 cut(s) 1010
BanII GRGCYC 1 cut(s) 1040
BbsI GAAGAC 1 cut(s) 993
BbvI GCAGC 3 cut(s) 193, 215, 239
BccI CCATC 5 cut(s) 59, 587, 699, 1388, 1524
BceAI ACGGC 2 cut(s) 176, 1285
BciT130I CCWGG 1 cut(s) 1514
BciVI GTATCC 1 cut(s) 1273
BcoDI GTCTC 4 cut(s) 146, 723, 876, 1142
BfaI CTAG 2 cut(s) 725, 1440
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 412
BfuI GTATCC 1 cut(s) 1273
BisI GCNGC 3 cut(s) 207, 229, 253
BlsI GCNGC 3 cut(s) 208, 230, 254
BmcAI AGTACT 2 cut(s) 401, 849
Bme1390I CCNGG 1 cut(s) 1514
BmiI GGNNCC 1 cut(s) 1012
BmrFI CCNGG 1 cut(s) 1514
BmsI GCATC 3 cut(s) 337, 847, 1387
BpiI GAAGAC 1 cut(s) 993
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BsaAI YACGTR 1 cut(s) 502
BsaBI GATNNNNATC 2 cut(s) 709, 1377
BsaJI CCNNGG 3 cut(s) 5, 645, 759
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 1118, 1148
Bsc4I CCNNNNNNNGG 1 cut(s) 1020
Bse1I ACTGG 2 cut(s) 623, 1475
Bse3DI GCAATG 1 cut(s) 307
Bse8I GATNNNNATC 2 cut(s) 709, 1377
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 1514
BseDI CCNNGG 3 cut(s) 5, 645, 759
BseGI GGATG 7 cut(s) 115, 352, 710, 755, 970, 1178, 1535
BseJI GATNNNNATC 2 cut(s) 709, 1377
BseLI CCNNNNNNNGG 1 cut(s) 1020
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 258, 1137
BseNI ACTGG 2 cut(s) 623, 1475
BseRI GAGGAG 4 cut(s) 56, 65, 1129, 1549
BseXI GCAGC 3 cut(s) 193, 215, 239
BsgI GTGCAG 3 cut(s) 141, 681, 1076
BshFI GGCC 1 cut(s) 1398
BshNI GGYRCC 1 cut(s) 1010
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 1020
BsmAI GTCTC 4 cut(s) 146, 723, 876, 1142
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 1398
Bsp1286I GDGCHC 1 cut(s) 1040
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 3 cut(s) 641, 710, 1026
BspACI CCGC 3 cut(s) 128, 246, 275
BspANI GGCC 1 cut(s) 1398
BspCNI CTCAG 2 cut(s) 259, 1138
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 1012
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 2 cut(s) 636, 718
BspT107I GGYRCC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 2 cut(s) 623, 1475
BssECI CCNNGG 3 cut(s) 5, 645, 759
BssMI GATC 3 cut(s) 641, 710, 1026
BssT1I CCWWGG 2 cut(s) 645, 759
Bst2UI CCWGG 1 cut(s) 1514
Bst4CI ACNGT 3 cut(s) 657, 774, 1494
Bst6I CTCTTC 5 cut(s) 5, 24, 632, 942, 1106
BstAPI GCANNNNNTGC 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 321, 1476
BstDEI CTNAG 3 cut(s) 267, 1120, 1146
BstENI CCTNNNNNAGG 1 cut(s) 1018
BstF5I GGATG 7 cut(s) 115, 352, 710, 755, 970, 1178, 1535
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 2 cut(s) 165, 1506
BstKTI GATC 3 cut(s) 644, 713, 1029
BstMAI GTCTC 4 cut(s) 146, 723, 876, 1142
BstMBI GATC 3 cut(s) 641, 710, 1026
BstMWI GCNNNNNNNGC 6 cut(s) 57, 171, 195, 228, 252, 309
BstNI CCWGG 1 cut(s) 1514
BstNSI RCATGY 2 cut(s) 461, 622
BstSCI CCNGG 1 cut(s) 1512
BstSFI CTRYAG 1 cut(s) 450
BstV1I GCAGC 3 cut(s) 193, 215, 239
BstV2I GAAGAC 1 cut(s) 993
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuI GTATCC 1 cut(s) 1273
BsuRI GGCC 1 cut(s) 1398
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 7 cut(s) 115, 352, 710, 755, 970, 1178, 1535
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 4 cut(s) 662, 669, 1468, 1490
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 321, 1476
CfoI GCGC 2 cut(s) 165, 1506
CseI GACGC 1 cut(s) 258
Csp6I GTAC 6 cut(s) 326, 400, 848, 1011, 1046, 1105
CspCI CAANNNNNGTGG 2 cut(s) 1401, 1436
CviAII CATG 4 cut(s) 193, 458, 619, 1451
CviQI GTAC 6 cut(s) 326, 400, 848, 1011, 1046, 1105
DdeI CTNAG 3 cut(s) 267, 1120, 1146
DpnI GATC 3 cut(s) 643, 712, 1028
DpnII GATC 3 cut(s) 641, 710, 1026
DraI TTTAAA 1 cut(s) 1315
Eam1104I CTCTTC 5 cut(s) 5, 24, 632, 942, 1106
EarI CTCTTC 5 cut(s) 5, 24, 632, 942, 1106
Eco130I CCWWGG 2 cut(s) 645, 759
Eco24I GRGCYC 1 cut(s) 1040
Eco57I CTGAAG 2 cut(s) 560, 1130
EcoNI CCTNNNNNAGG 1 cut(s) 1018
EcoRII CCWGG 1 cut(s) 1512
EcoT14I CCWWGG 2 cut(s) 645, 759
EcoT38I GRGCYC 1 cut(s) 1040
ErhI CCWWGG 2 cut(s) 645, 759
FaeI CATG 4 cut(s) 196, 461, 622, 1454
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FatI CATG 4 cut(s) 192, 457, 618, 1450
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 2 cut(s) 462, 1447
Fnu4HI GCNGC 3 cut(s) 207, 229, 253
FokI GGATG 7 cut(s) 102, 359, 717, 742, 977, 1185, 1542
FriOI GRGCYC 1 cut(s) 1040
Fsp4HI GCNGC 3 cut(s) 207, 229, 253
FspBI CTAG 2 cut(s) 725, 1440
GlaI GCGC 2 cut(s) 164, 1505
GluI GCNGC 3 cut(s) 207, 229, 253
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 1 cut(s) 1398
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 258
HhaI GCGC 2 cut(s) 165, 1506
Hin1II CATG 4 cut(s) 196, 461, 622, 1454
Hin6I GCGC 2 cut(s) 163, 1504
HinP1I GCGC 2 cut(s) 163, 1504
HincII GTYRAC 2 cut(s) 373, 954
HindII GTYRAC 2 cut(s) 373, 954
HindIII AAGCTT 4 cut(s) 108, 317, 818, 1097
HinfI GANTC 8 cut(s) 72, 140, 263, 353, 515, 554, 950, 1185
HpaII CCGG 1 cut(s) 119
HphI GGTGA 3 cut(s) 775, 1169, 1217
Hpy166II GTNNAC 5 cut(s) 373, 463, 954, 1105, 1448
Hpy188III TCNNGA 3 cut(s) 119, 944, 1085
Hpy8I GTNNAC 5 cut(s) 373, 463, 954, 1105, 1448
HpyAV CCTTC 6 cut(s) 19, 481, 584, 926, 1429, 1557
HpyCH4III ACNGT 3 cut(s) 657, 774, 1494
HpyCH4IV ACGT 1 cut(s) 501
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 171, 195, 228, 252, 309
HpyF3I CTNAG 3 cut(s) 267, 1120, 1146
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 4 cut(s) 196, 461, 622, 1454
HspAI GCGC 2 cut(s) 163, 1504
Kpn2I TCCGGA 1 cut(s) 118
KpnI GGTACC 1 cut(s) 1014
Kzo9I GATC 3 cut(s) 641, 710, 1026
LmnI GCTCC 2 cut(s) 1116, 1423
Lsp1109I GCAGC 3 cut(s) 193, 215, 239
LweI GCATC 3 cut(s) 337, 847, 1387
MaeI CTAG 2 cut(s) 725, 1440
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 7 cut(s) 260, 506, 569, 768, 781, 793, 1165
MalI GATC 3 cut(s) 643, 712, 1028
MboI GATC 3 cut(s) 641, 710, 1026
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 1 cut(s) 1040
MlyI GAGTC 5 cut(s) 66, 134, 257, 959, 1194
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 979
MslI CAYNNNNRTG 1 cut(s) 788
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 1514
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 1514
MwoI GCNNNNNNNGC 6 cut(s) 57, 171, 195, 228, 252, 309
NdeII GATC 3 cut(s) 641, 710, 1026
NlaIII CATG 4 cut(s) 196, 461, 622, 1454
NlaIV GGNNCC 1 cut(s) 1012
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 5 cut(s) 260, 506, 569, 768, 781
NspI RCATGY 2 cut(s) 461, 622
OliI CACNNNNGTG 1 cut(s) 788
PacI TTAATTAA 1 cut(s) 1563
PciI ACATGT 1 cut(s) 457
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 979
PfeI GAWTC 3 cut(s) 353, 515, 554
PkrI GCNGC 3 cut(s) 208, 230, 254
PleI GAGTC 5 cut(s) 66, 134, 257, 958, 1193
PpsI GAGTC 5 cut(s) 66, 134, 257, 958, 1193
Ppu21I YACGTR 1 cut(s) 502
PscI ACATGT 1 cut(s) 457
PshBI ATTAAT 1 cut(s) 1563
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 1512
PspGI CCWGG 1 cut(s) 1512
PspN4I GGNNCC 1 cut(s) 1012
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 641
RsaI GTAC 6 cut(s) 327, 401, 849, 1012, 1047, 1106
RsaNI GTAC 6 cut(s) 326, 400, 848, 1011, 1046, 1105
RseI CAYNNNNRTG 1 cut(s) 788
SatI GCNGC 3 cut(s) 207, 229, 253
Sau3AI GATC 3 cut(s) 641, 710, 1026
ScaI AGTACT 2 cut(s) 401, 849
SchI GAGTC 5 cut(s) 66, 134, 257, 959, 1194
ScrFI CCNGG 1 cut(s) 1514
SduI GDGCHC 1 cut(s) 1040
SfaNI GCATC 3 cut(s) 337, 847, 1387
SfcI CTRYAG 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 788
SsiI CCGC 3 cut(s) 128, 246, 275
SspMI CTAG 2 cut(s) 725, 1440
StyD4I CCNGG 1 cut(s) 1512
StyI CCWWGG 2 cut(s) 645, 759
TaaI ACNGT 3 cut(s) 657, 774, 1494
TaiI ACGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 396, 518
TatI WGTACW 3 cut(s) 325, 399, 847
TfiI GAWTC 3 cut(s) 353, 515, 554
TscAI CASTG 4 cut(s) 662, 669, 1475, 1497
TseFI GTSAC 5 cut(s) 260, 506, 569, 768, 781
TseI GCWGC 3 cut(s) 206, 228, 252
Tsp45I GTSAC 5 cut(s) 260, 506, 569, 768, 781
TspDTI ATGAA 5 cut(s) 181, 443, 576, 792, 1536
TspRI CASTG 4 cut(s) 662, 669, 1475, 1497
VspI ATTAAT 1 cut(s) 1563
XagI CCTNNNNNAGG 1 cut(s) 1018
XapI RAATTY 5 cut(s) 545, 695, 728, 1219, 1257
XceI RCATGY 2 cut(s) 461, 622
XmiI GTMKAC 2 cut(s) 462, 1447
XmnI GAANNNNTTC 1 cut(s) 979
XspI CTAG 2 cut(s) 725, 1440
ZrmI AGTACT 2 cut(s) 401, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.