Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002885

Physical Location & Seq

Genomic Coordinates Forward (+)

35826257 .. 35832802

Gene Structure 6546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGCCCAGGAAGAGTAAAGCAAAGAAGGAAGAGATTTGCGAAGAGGTTTGCTTCTATTGCAAAGATGGAGGACTCCTCTTGGTCTGCGACTACAAGGGTTGTCTTAAAGCTTATCATCCTGAATGTGCGGGAAAAGATGACTCTTTTGTGGAGACTGCACGGCGCTGGAATTGCAAATGGCATTCTTGCTTCTTGTGCCATAAAGCTGCAAAGTTTCAATGCTTTTGCTGCCCACAAGCTGTATGCGGACGCTGCCTCTGTGACTCTGAGTTTGCGGTTATTAAAGTGGATAGAGGATTTTGCAATAATTGCTTGAAGCTTGCTGTACTCATAGAAGAAAACTTGGATGCTGATTCTGACGGGGGCAGAGTTGACTTCAAAGATATAAACACATTCGAGTACTTATTTAAGGAGTATTGGCAGGTAATGAAAAAGAAAGAACGCTTGTCTGCAGAACATGTCTACTCTGCAAAAAAGTTATTAAAGAAGGGAAAGAACTACGTGCGTGACTTTGATTCAAATATAATTTGTAAGAAAGAAGCAAAATTTTCAGAATCCGATGAAGAAAGTGACCATCAGGTGTCTGATTATGATGGAGTGGAAAGTGGAGAAGAATACATGCCAGTTGCCAAAAAGAAGAGATCCAAGGGAAAACAGCGTGCAGTGAAAAGAAAAGTAGAAGCAAAGAAACAAGAATTTATGGGATGGGGATCAAAGTCTCTCTTAGAATTCCTTGCTTCTATGGGTAAAGATACATCCAAGGAGTTATCACAGTATGAAGTCACCTCTATGGTTACAGACTATTGTAAAGAAAACAAGCTTTTTGACCCAGAAAAGAAGAACAAAGTAAATTGCGATGCAACCTTGCAGTCTCTTTTAGGGAGGAAATCATTGAATAAAAATAGTATATATAACCTTCTGACTTCCCATTTTGCTGACAATATGGAAGAGTCAACGGAGGGGGATGAGAGTGGAAGTAGTTCTGAAGACAAAGATGAGAGTTTTATGGGTACCTGTAAAAGGCAGATCAAGTTGAGCCCTAAAGTACCAGATGTGCAGAAAAGCTGTTTTGCTTCCATAGTTCCTGAAAACATCAAGCTTGTGTACCTGAAGAGGAGCTTAGTGGAGGAATTGTTAAAGCAACCTGAGACTTTTGGTGAGAAAGTGACAGGATGTTTTGTGAGAGTCAAATCTGACCCAAATGATTACTCACAGAAAAATTCTCACCAGCTCTTGCAAATTAAAGGTATAAAGGAAATTTTGAGGAACGGCAGAGAGGATACAGAAATACTTTTGCAATTTTTCAGTAATTTTAAAGATTTACCTGTTTCCAAGCTGTCAGATGATGACTTCTGTAAGGAAGAATGTGAAGATTTGCATCAGAGAGTGAAAGATGGCCTCCTTAAAAAGCCAACTATTGTGGAGCTTGAACAGAAGGCTAGAAGTCTACATGAGAATATTACAAAGCACTGGCTTGCAAGAGAACTGAATCTGTTGCAGAAGCGCATTGATCTGGCAAATGAAAAAGGATGGAGGAGAGAATATCCTTCTATTAAGTTGATTAATATAGCAACAACAAAGGTAGAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

531

Amino Acids

61.02

Weight (kDa)

8.24

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	239 - 311	6.3e-13	SWIB/MDM2 domain
SWIB_eIF2D	PF26291	240 - 297	6.4e-08	eIF2D, SWIB domain
Plus-3	PF03126	364 - 463	6.9e-18	Plus-3 domain
NERD_plant	PF25980	486 - 516	3.9e-14	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63700 AT5G63700
fragaria_vesca	FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310
malus_domestica	MD15G1440700.v1.1
prunus_persica	Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1
pyrus_communis	pycom15g38850
rosa_chinensis	RchiOBHm_Chr6g0272281 RchiOBHm_Chr6g0272291
rosa_laevigata	RLG00000013684 RLG00000013685
rosa_multiflora	Rmu_co8463891.1_g000001 Rmu_sc0004424.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196450
rosa_rugosa	Rorug06G0067400
rosa_samantha	Rh6AG184100 Rh6BG187300 Rh6CG185600 Rh6DG177400
rosa_wichuraiana	Rw6G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
Acc65I	GGTACC	1 cut(s)	1010
AccB1I	GGYRCC	1 cut(s)	1010
AccI	GTMKAC	2 cut(s)	462, 1447
AciI	CCGC	3 cut(s)	128, 246, 275
AclWI	GGATC	2 cut(s)	636, 718
AcsI	RAATTY	5 cut(s)	545, 695, 728, 1219, 1257
AcuI	CTGAAG	2 cut(s)	1005, 1130
AfaI	GTAC	5 cut(s)	327, 401, 1012, 1047, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	1020
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	6 cut(s)	218, 316, 379, 519, 895, 1430
AjnI	CCWGG	1 cut(s)	5
Alw26I	GTCTC	4 cut(s)	146, 723, 876, 1142
AlwI	GGATC	2 cut(s)	636, 718
AoxI	GGCC	1 cut(s)	1396
ApeKI	GCWGC	3 cut(s)	206, 228, 252
ApoI	RAATTY	5 cut(s)	545, 695, 728, 1219, 1257
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AseI	ATTAAT	1 cut(s)	1563
Asp700I	GAANNNNTTC	1 cut(s)	979
Asp718I	GGTACC	1 cut(s)	1010
AspLEI	GCGC	2 cut(s)	165, 1506
AsuHPI	GGTGA	3 cut(s)	775, 1169, 1217
BanI	GGYRCC	1 cut(s)	1010
BanII	GRGCYC	1 cut(s)	1040
BbsI	GAAGAC	1 cut(s)	993
BbvI	GCAGC	3 cut(s)	193, 215, 239
BccI	CCATC	6 cut(s)	59, 582, 587, 699, 1388, 1524
BceAI	ACGGC	2 cut(s)	176, 1285
BciT130I	CCWGG	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	1273
BcoDI	GTCTC	4 cut(s)	146, 723, 876, 1142
BfaI	CTAG	1 cut(s)	1440
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	1273
BisI	GCNGC	3 cut(s)	207, 229, 253
BlsI	GCNGC	3 cut(s)	208, 230, 254
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	1012
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	3 cut(s)	337, 847, 1387
BpiI	GAAGAC	1 cut(s)	993
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BsaAI	YACGTR	1 cut(s)	502
BsaBI	GATNNNNATC	2 cut(s)	709, 1377
BsaJI	CCNNGG	3 cut(s)	5, 645, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	1118, 1148
Bsc4I	CCNNNNNNNGG	1 cut(s)	1020
Bse1I	ACTGG	2 cut(s)	623, 1475
Bse8I	GATNNNNATC	2 cut(s)	709, 1377
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	3 cut(s)	5, 645, 759
BseGI	GGATG	7 cut(s)	115, 352, 710, 755, 970, 1178, 1535
BseJI	GATNNNNATC	2 cut(s)	709, 1377
BseLI	CCNNNNNNNGG	1 cut(s)	1020
BseMII	CTCAG	2 cut(s)	258, 1137
BseNI	ACTGG	2 cut(s)	623, 1475
BseRI	GAGGAG	3 cut(s)	65, 1129, 1549
BseXI	GCAGC	3 cut(s)	193, 215, 239
BsgI	GTGCAG	3 cut(s)	141, 681, 1076
BshFI	GGCC	1 cut(s)	1398
BshNI	GGYRCC	1 cut(s)	1010
BslI	CCNNNNNNNGG	1 cut(s)	1020
BsmAI	GTCTC	4 cut(s)	146, 723, 876, 1142
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	1398
Bsp1286I	GDGCHC	1 cut(s)	1040
Bsp143I	GATC	4 cut(s)	641, 710, 1026, 1510
BspACI	CCGC	3 cut(s)	128, 246, 275
BspANI	GGCC	1 cut(s)	1398
BspCNI	CTCAG	2 cut(s)	259, 1138
BspLI	GGNNCC	1 cut(s)	1012
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	636, 718
BspT107I	GGYRCC	1 cut(s)	1010
BsrI	ACTGG	2 cut(s)	623, 1475
BssECI	CCNNGG	3 cut(s)	5, 645, 759
BssMI	GATC	4 cut(s)	641, 710, 1026, 1510
BssT1I	CCWWGG	2 cut(s)	645, 759
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	774
Bst6I	CTCTTC	6 cut(s)	5, 24, 36, 632, 942, 1106
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	3 cut(s)	321, 660, 1476
BstDEI	CTNAG	4 cut(s)	267, 724, 1120, 1146
BstENI	CCTNNNNNAGG	1 cut(s)	1018
BstF5I	GGATG	7 cut(s)	115, 352, 710, 755, 970, 1178, 1535
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	165, 1506
BstKTI	GATC	4 cut(s)	644, 713, 1029, 1513
BstMAI	GTCTC	4 cut(s)	146, 723, 876, 1142
BstMBI	GATC	4 cut(s)	641, 710, 1026, 1510
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 171, 195, 228, 252, 309
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	2 cut(s)	461, 622
BstSCI	CCNGG	1 cut(s)	5
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	193, 215, 239
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	1273
BsuRI	GGCC	1 cut(s)	1398
BtgZI	GCGATG	1 cut(s)	870
BtsCI	GGATG	7 cut(s)	115, 352, 710, 755, 970, 1178, 1535
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	2 cut(s)	669, 1468
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	321, 660, 1476
CfoI	GCGC	2 cut(s)	165, 1506
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	5 cut(s)	326, 400, 1011, 1046, 1105
CspCI	CAANNNNNGTGG	2 cut(s)	1401, 1436
CviAII	CATG	3 cut(s)	458, 619, 1451
CviQI	GTAC	5 cut(s)	326, 400, 1011, 1046, 1105
DdeI	CTNAG	4 cut(s)	267, 724, 1120, 1146
DpnI	GATC	4 cut(s)	643, 712, 1028, 1512
DpnII	GATC	4 cut(s)	641, 710, 1026, 1510
DraI	TTTAAA	1 cut(s)	1315
Eam1104I	CTCTTC	6 cut(s)	5, 24, 36, 632, 942, 1106
EarI	CTCTTC	6 cut(s)	5, 24, 36, 632, 942, 1106
Eco130I	CCWWGG	2 cut(s)	645, 759
Eco24I	GRGCYC	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	1005, 1130
EcoNI	CCTNNNNNAGG	1 cut(s)	1018
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	645, 759
EcoT38I	GRGCYC	1 cut(s)	1040
ErhI	CCWWGG	2 cut(s)	645, 759
FaeI	CATG	3 cut(s)	461, 622, 1454
FalI	AAGNNNNNCTT	4 cut(s)	707, 739, 1103, 1135
FatI	CATG	3 cut(s)	457, 618, 1450
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	2 cut(s)	462, 1447
Fnu4HI	GCNGC	3 cut(s)	207, 229, 253
FokI	GGATG	7 cut(s)	102, 359, 717, 742, 977, 1185, 1542
FriOI	GRGCYC	1 cut(s)	1040
Fsp4HI	GCNGC	3 cut(s)	207, 229, 253
FspBI	CTAG	1 cut(s)	1440
GlaI	GCGC	2 cut(s)	164, 1505
GluI	GCNGC	3 cut(s)	207, 229, 253
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	1398
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	2 cut(s)	165, 1506
Hin1II	CATG	3 cut(s)	461, 622, 1454
Hin6I	GCGC	2 cut(s)	163, 1504
HinP1I	GCGC	2 cut(s)	163, 1504
HincII	GTYRAC	2 cut(s)	373, 954
HindII	GTYRAC	2 cut(s)	373, 954
HindIII	AAGCTT	4 cut(s)	108, 317, 818, 1097
HinfI	GANTC	9 cut(s)	72, 140, 263, 353, 515, 554, 950, 1185, 1489
HphI	GGTGA	3 cut(s)	775, 1169, 1217
Hpy166II	GTNNAC	5 cut(s)	373, 463, 954, 1105, 1448
Hpy188III	TCNNGA	2 cut(s)	119, 1085
Hpy8I	GTNNAC	5 cut(s)	373, 463, 954, 1105, 1448
HpyAV	CCTTC	5 cut(s)	19, 481, 926, 1429, 1557
HpyCH4III	ACNGT	1 cut(s)	774
HpyCH4IV	ACGT	1 cut(s)	501
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 171, 195, 228, 252, 309
HpyF3I	CTNAG	4 cut(s)	267, 724, 1120, 1146
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	461, 622, 1454
HspAI	GCGC	2 cut(s)	163, 1504
KpnI	GGTACC	1 cut(s)	1014
Kzo9I	GATC	4 cut(s)	641, 710, 1026, 1510
LmnI	GCTCC	2 cut(s)	1116, 1423
Lsp1109I	GCAGC	3 cut(s)	193, 215, 239
LweI	GCATC	3 cut(s)	337, 847, 1387
MaeI	CTAG	1 cut(s)	1440
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	6 cut(s)	260, 506, 569, 781, 793, 1165
MalI	GATC	4 cut(s)	643, 712, 1028, 1512
MboI	GATC	4 cut(s)	641, 710, 1026, 1510
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	1040
MlyI	GAGTC	5 cut(s)	66, 134, 257, 959, 1194
MroXI	GAANNNNTTC	1 cut(s)	979
MslI	CAYNNNNRTG	1 cut(s)	788
MspR9I	CCNGG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	6 cut(s)	57, 171, 195, 228, 252, 309
NdeII	GATC	4 cut(s)	641, 710, 1026, 1510
NlaIII	CATG	3 cut(s)	461, 622, 1454
NlaIV	GGNNCC	1 cut(s)	1012
NmuCI	GTSAC	5 cut(s)	260, 506, 569, 781, 1165
NspI	RCATGY	2 cut(s)	461, 622
PciI	ACATGT	1 cut(s)	457
PctI	GAATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	4 cut(s)	353, 515, 554, 1489
PkrI	GCNGC	3 cut(s)	208, 230, 254
PleI	GAGTC	5 cut(s)	66, 134, 257, 958, 1193
PpsI	GAGTC	5 cut(s)	66, 134, 257, 958, 1193
Ppu21I	YACGTR	1 cut(s)	502
PscI	ACATGT	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	1563
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	1012
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	641
RsaI	GTAC	5 cut(s)	327, 401, 1012, 1047, 1106
RsaNI	GTAC	5 cut(s)	326, 400, 1011, 1046, 1105
RseI	CAYNNNNRTG	1 cut(s)	788
SatI	GCNGC	3 cut(s)	207, 229, 253
Sau3AI	GATC	4 cut(s)	641, 710, 1026, 1510
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	5 cut(s)	66, 134, 257, 959, 1194
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	1040
SfaNI	GCATC	3 cut(s)	337, 847, 1387
SfcI	CTRYAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	788
SsiI	CCGC	3 cut(s)	128, 246, 275
SspI	AATATT	1 cut(s)	1459
SspMI	CTAG	1 cut(s)	1440
StyD4I	CCNGG	1 cut(s)	5
StyI	CCWWGG	2 cut(s)	645, 759
TaaI	ACNGT	1 cut(s)	774
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	1 cut(s)	396
TatI	WGTACW	2 cut(s)	325, 399
TfiI	GAWTC	4 cut(s)	353, 515, 554, 1489
TscAI	CASTG	2 cut(s)	669, 1475
TseFI	GTSAC	5 cut(s)	260, 506, 569, 781, 1165
TseI	GCWGC	3 cut(s)	206, 228, 252
Tsp45I	GTSAC	5 cut(s)	260, 506, 569, 781, 1165
TspDTI	ATGAA	4 cut(s)	443, 576, 792, 1536
TspGWI	ACGGA	1 cut(s)	971
TspRI	CASTG	2 cut(s)	669, 1475
VspI	ATTAAT	1 cut(s)	1563
XagI	CCTNNNNNAGG	1 cut(s)	1018
XapI	RAATTY	5 cut(s)	545, 695, 728, 1219, 1257
XceI	RCATGY	2 cut(s)	461, 622
XmiI	GTMKAC	2 cut(s)	462, 1447
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	1 cut(s)	1440
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.