Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002885

Physical Location & Seq

Genomic Coordinates Forward (+)

54051087 .. 54058839

Gene Structure 7753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1440700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGCCGAGAAAGAGTAAAAGAAGAAAGGAAGAAATTTGTGAAGATTATTGCTTTCGATGCAAAGATGGAGGAGCTGTGAGGATATGTGATTATAAGGACTGTCTAAAAGTTTATCATCCTCAGTGTGTCGAAAAAGATGACTCGTTTTTGAAGAGCAAAGATCGCTGGACTTGCAACCGCCATTCTTGCTTCATATGCCAAAGAATTCCCAAGTTTTATTGCTTTTGCTGCCCGCAAGCTGTGTGCGGGCGTTGCCTCTGTGATGCTGAGTTTGCTGTAGTTAAGGGGAGTGAAGGATTTTGCAATCATTGTTTGAAGCTTGCAATAATGATAGAAGAAAATGTGGATGTGGATTCTGATGGGGGGAGAGTTGATTTCAAAGAAAGAAATACGTTTGAGTTCCTATTCATGGAATATTGGGAAATAATAAAAGAGAAACATGGCTTATCTTCAGAGCAGGTTTACTCCGCAAAAGACTTATTGAAGAATGGTGAGAACCATACACATGACTCTGACTTCGATTTAAACGAAATTTCTCAAGAAGAAGAAAGTTTTACTGAATCTGATGAAGAAAGTGATGACGACAATTGGAAAGGTAGAGAAGAATACGTGCCAGTTGGCAAAAAGAAGAGATCCAAGGGAAACCAGTGTGCAATGAAAAGGAAAGCAAAAGCAACGAAAATAGAGTTTAGAGGATGGGGGTCAAAATCTCTCTTAGAATTCCTCATTTCCATCGGGAAAGATACAACCAAGGAGTTATCGCAGAATGAAGTTACCACTATAGTTTCAAACTACTGTAAAGAACACAACCTTTTTCACCCACAGAAAAAGAAGATGGTAATGTGTGATCCAATGCTGCAGTCTCTTTTGGGAAAGAAATCTATCAATATAAATAGGTTATATAACCTTCTGGATGCCCATTTTGCTGAGAATCTTGACTTAACCGAGGAGGATGAGACTGGCAGTAGTTCTGAAGACAATGATAAGAATCTTATGGTGACTTGTAATAGGCAGCCCAAGTTGGTCTCAGATAGACAACCTCAAAAGACAAATGTAGTTCCGGGTGTGCGGAAAACCTGTTTTGCTTCCATAGTTGCTGAAAACATTAAGCTTGTGTACCTGAAGAGGAGTTTGGTGGAGGAATTGTTAAAGCAACCTGAGACTTTTGATGAAAAAGTAGTAGGAAGTTTTGTGAGAGTCAAATCTGACCCAAATGATTATTCACAGAAAAATTCTTACCAGCTCTTGCAAGTCAAAGGCACACGGAAAACTTCGAGCAATGGTGAAATGAATACAGAAATTTTCATGCAACTTGTCAATATGCCAAAAGATGTACAGGTCTGCGAGCTGTCAAATGATGACTTCTGTGAGGAAGAGTGTAAAGATTTGCATCAGAGAGTGAAAGAAGGAAAGCTTAAGAGGCCCACTGTTGTGGAGCTTGAACAGAAGGCTAGATGTCTGCACAAGGATATAATGGAGCGTGTGCGTTTTCTTGCTTTAACCTCTAACAAGAATATCTGTTTTCTATGTTATCTTAATTTTGAGATTCCCAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

520

Amino Acids

60.12

Weight (kDa)

6.33

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_NSD	PF22908	16 - 61	2.6e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
SWIB	PF02201	238 - 308	2.6e-12	SWIB/MDM2 domain
SWIB_eIF2D	PF26291	238 - 295	5e-08	eIF2D, SWIB domain
Plus-3	PF03126	368 - 467	7.9e-20	Plus-3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63700 AT5G63700
fragaria_vesca	FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310
malus_domestica	MD15G1440700.v1.1
prunus_persica	Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1
pyrus_communis	pycom15g38850
rosa_chinensis	RchiOBHm_Chr6g0272281 RchiOBHm_Chr6g0272291
rosa_laevigata	RLG00000013684 RLG00000013685
rosa_multiflora	Rmu_co8463891.1_g000001 Rmu_sc0004424.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196450
rosa_rugosa	Rorug06G0067400
rosa_samantha	Rh6AG184100 Rh6BG187300 Rh6CG185600 Rh6DG177400
rosa_wichuraiana	Rw6G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	448
AciI	CCGC	5 cut(s)	178, 233, 246, 468, 1069
AclWI	GGATC	2 cut(s)	627, 842
AcsI	RAATTY	6 cut(s)	33, 204, 531, 719, 1231, 1299
AcuI	CTGAAG	3 cut(s)	435, 993, 1142
AfaI	GTAC	2 cut(s)	1118, 1335
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	1415
AgsI	TTSAA	6 cut(s)	151, 316, 379, 484, 789, 1442
AjuI	GAANNNNNNNTTGG	4 cut(s)	1115, 1147, 1204, 1236
AleI	CACNNNNGTG	1 cut(s)	1430
AluBI	AGCT	8 cut(s)	74, 239, 319, 1111, 1243, 1348, 1414, 1438
AluI	AGCT	8 cut(s)	74, 239, 319, 1111, 1243, 1348, 1414, 1438
Alw26I	GTCTC	4 cut(s)	867, 950, 1030, 1154
AlwI	GGATC	2 cut(s)	627, 842
AoxI	GGCC	1 cut(s)	1421
ApeKI	GCWGC	3 cut(s)	228, 856, 1012
ApoI	RAATTY	6 cut(s)	33, 204, 531, 719, 1231, 1299
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspS9I	GGNCC	1 cut(s)	1422
AsuC2I	CCSGG	1 cut(s)	1062
AsuHPI	GGTGA	4 cut(s)	503, 809, 1009, 1295
BbsI	GAAGAC	1 cut(s)	981
BbvI	GCAGC	3 cut(s)	215, 843, 1024
BccI	CCATC	5 cut(s)	59, 353, 690, 740, 829
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	4 cut(s)	867, 950, 1030, 1154
BfaI	CTAG	1 cut(s)	1452
BfmI	CTRYAG	3 cut(s)	276, 780, 857
BfrI	CTTAAG	1 cut(s)	1415
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	3 cut(s)	229, 857, 1013
BlsI	GCNGC	3 cut(s)	230, 858, 1014
Bme1390I	CCNGG	1 cut(s)	1062
BmgT120I	GGNCC	1 cut(s)	1422
BmrFI	CCNGG	1 cut(s)	1062
BmsI	GCATC	4 cut(s)	47, 253, 904, 1399
BpiI	GAAGAC	1 cut(s)	981
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	1062
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	2 cut(s)	987, 1389
BsaI	GGTCTC	1 cut(s)	1030
BsaJI	CCNNGG	3 cut(s)	636, 750, 945
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 1130, 1160
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	3 cut(s)	614, 646, 964
Bse3DI	GCAATG	2 cut(s)	660, 1285
Bse8I	GATNNNNATC	2 cut(s)	987, 1389
BseDI	CCNNGG	3 cut(s)	636, 750, 945
BseGI	GGATG	5 cut(s)	115, 352, 701, 919, 958
BseJI	GATNNNNATC	2 cut(s)	987, 1389
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	2 cut(s)	660, 1285
BseMII	CTCAG	5 cut(s)	134, 258, 918, 1041, 1149
BseNI	ACTGG	3 cut(s)	614, 646, 964
BseRI	GAGGAG	3 cut(s)	84, 962, 1141
BseXI	GCAGC	3 cut(s)	215, 843, 1024
BsgI	GTGCAG	1 cut(s)	1445
BshFI	GGCC	1 cut(s)	1423
BsiSI	CCGG	1 cut(s)	1061
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	4 cut(s)	867, 950, 1030, 1154
BsnI	GGCC	1 cut(s)	1423
Bso31I	GGTCTC	1 cut(s)	1030
Bsp1407I	TGTACA	1 cut(s)	1333
Bsp143I	GATC	3 cut(s)	160, 632, 847
BspACI	CCGC	5 cut(s)	178, 233, 246, 468, 1069
BspANI	GGCC	1 cut(s)	1423
BspCNI	CTCAG	5 cut(s)	133, 259, 919, 1040, 1150
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	627, 842
BspQI	GCTCTTC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	1415
BspTNI	GGTCTC	1 cut(s)	1030
BsrDI	GCAATG	2 cut(s)	660, 1285
BsrGI	TGTACA	1 cut(s)	1333
BsrI	ACTGG	3 cut(s)	614, 646, 964
BssECI	CCNNGG	3 cut(s)	636, 750, 945
BssMI	GATC	3 cut(s)	160, 632, 847
BssT1I	CCWWGG	2 cut(s)	636, 750
Bst4CI	ACNGT	3 cut(s)	101, 797, 1429
Bst6I	CTCTTC	4 cut(s)	146, 623, 1118, 1368
BstAFI	CTTAAG	1 cut(s)	1415
BstAUI	TGTACA	1 cut(s)	1333
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	5 cut(s)	233, 237, 248, 321, 1346
BstDEI	CTNAG	6 cut(s)	120, 267, 715, 927, 1027, 1158
BstF5I	GGATG	5 cut(s)	115, 352, 701, 919, 958
BstKTI	GATC	3 cut(s)	163, 635, 850
BstMAI	GTCTC	4 cut(s)	867, 950, 1030, 1154
BstMBI	GATC	3 cut(s)	160, 632, 847
BstSCI	CCNGG	1 cut(s)	1060
BstSFI	CTRYAG	3 cut(s)	276, 780, 857
BstV1I	GCAGC	3 cut(s)	215, 843, 1024
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	1 cut(s)	632
BstXI	CCANNNNNNTGG	1 cut(s)	1432
BstYI	RGATCY	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	1423
BtsCI	GGATG	5 cut(s)	115, 352, 701, 919, 958
BtsIMutI	CAGTG	3 cut(s)	128, 653, 1425
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	5 cut(s)	233, 237, 248, 321, 1346
Cfr13I	GGNCC	1 cut(s)	1422
Csp6I	GTAC	2 cut(s)	1117, 1334
CviAII	CATG	4 cut(s)	409, 440, 506, 1306
CviQI	GTAC	2 cut(s)	1117, 1334
DdeI	CTNAG	6 cut(s)	120, 267, 715, 927, 1027, 1158
DpnI	GATC	3 cut(s)	162, 634, 849
DpnII	GATC	3 cut(s)	160, 632, 847
DraI	TTTAAA	1 cut(s)	525
Eam1104I	CTCTTC	4 cut(s)	146, 623, 1118, 1368
EarI	CTCTTC	4 cut(s)	146, 623, 1118, 1368
Eco130I	CCWWGG	2 cut(s)	636, 750
Eco31I	GGTCTC	1 cut(s)	1030
Eco57I	CTGAAG	3 cut(s)	435, 993, 1142
EcoRI	GAATTC	2 cut(s)	204, 719
EcoT14I	CCWWGG	2 cut(s)	636, 750
ErhI	CCWWGG	2 cut(s)	636, 750
FaeI	CATG	4 cut(s)	412, 443, 509, 1309
FalI	AAGNNNNNCTT	2 cut(s)	1398, 1430
FatI	CATG	4 cut(s)	408, 439, 505, 1305
FauI	CCCGC	2 cut(s)	239, 240
FauNDI	CATATG	1 cut(s)	194
Fnu4HI	GCNGC	3 cut(s)	229, 857, 1013
FokI	GGATG	5 cut(s)	102, 359, 708, 926, 965
Fsp4HI	GCNGC	3 cut(s)	229, 857, 1013
FspBI	CTAG	1 cut(s)	1452
GluI	GCNGC	3 cut(s)	229, 857, 1013
HaeIII	GGCC	1 cut(s)	1423
HapII	CCGG	1 cut(s)	1061
Hin1II	CATG	4 cut(s)	412, 443, 509, 1309
HindIII	AAGCTT	3 cut(s)	317, 1109, 1412
HinfI	GANTC	8 cut(s)	140, 353, 509, 560, 931, 988, 1197, 1546
HpaII	CCGG	1 cut(s)	1061
HphI	GGTGA	4 cut(s)	503, 809, 1009, 1295
Hpy166II	GTNNAC	2 cut(s)	463, 1117
Hpy188I	TCNGA	8 cut(s)	358, 454, 514, 565, 973, 1030, 1207, 1395
Hpy188III	TCNNGA	4 cut(s)	539, 736, 911, 935
Hpy8I	GTNNAC	2 cut(s)	463, 1117
HpyAV	CCTTC	4 cut(s)	287, 917, 1400, 1441
HpyCH4III	ACNGT	3 cut(s)	101, 797, 1429
HpyCH4IV	ACGT	2 cut(s)	392, 609
HpyF3I	CTNAG	6 cut(s)	120, 267, 715, 927, 1027, 1158
HpySE526I	ACGT	2 cut(s)	392, 609
Hsp92II	CATG	4 cut(s)	412, 443, 509, 1309
Kzo9I	GATC	3 cut(s)	160, 632, 847
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	71, 1435, 1477
Lsp1109I	GCAGC	3 cut(s)	215, 843, 1024
LweI	GCATC	4 cut(s)	47, 253, 904, 1399
MaeI	CTAG	1 cut(s)	1452
MaeII	ACGT	2 cut(s)	392, 609
MaeIII	GTNAC	2 cut(s)	772, 997
MalI	GATC	3 cut(s)	162, 634, 849
MboI	GATC	3 cut(s)	160, 632, 847
MfeI	CAATTG	1 cut(s)	586
MflI	RGATCY	1 cut(s)	632
MluCI	AATT	9 cut(s)	33, 204, 531, 586, 719, 1142, 1231, 1299, 1537
MlyI	GAGTC	3 cut(s)	134, 503, 1206
MseI	TTAA	8 cut(s)	282, 524, 941, 1107, 1148, 1416, 1499, 1536
MslI	CAYNNNNRTG	2 cut(s)	504, 1430
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	1 cut(s)	1061
MspR9I	CCNGG	1 cut(s)	1062
MunI	CAATTG	1 cut(s)	586
NciI	CCSGG	1 cut(s)	1062
NdeI	CATATG	1 cut(s)	194
NdeII	GATC	3 cut(s)	160, 632, 847
NlaIII	CATG	4 cut(s)	412, 443, 509, 1309
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	997
OliI	CACNNNNGTG	1 cut(s)	1430
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	5 cut(s)	353, 560, 931, 988, 1546
PkrI	GCNGC	3 cut(s)	230, 858, 1014
PleI	GAGTC	3 cut(s)	134, 503, 1205
PpsI	GAGTC	3 cut(s)	134, 503, 1205
Ppu21I	YACGTR	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	1422
PstI	CTGCAG	1 cut(s)	861
PsuI	RGATCY	1 cut(s)	632
RsaI	GTAC	2 cut(s)	1118, 1335
RsaNI	GTAC	2 cut(s)	1117, 1334
RseI	CAYNNNNRTG	2 cut(s)	504, 1430
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	8 cut(s)	282, 524, 941, 1107, 1148, 1416, 1499, 1536
SatI	GCNGC	3 cut(s)	229, 857, 1013
Sau3AI	GATC	3 cut(s)	160, 632, 847
Sau96I	GGNCC	1 cut(s)	1422
SchI	GAGTC	3 cut(s)	134, 503, 1206
ScrFI	CCNGG	1 cut(s)	1062
SfaNI	GCATC	4 cut(s)	47, 253, 904, 1399
SfcI	CTRYAG	3 cut(s)	276, 780, 857
SmiMI	CAYNNNNRTG	2 cut(s)	504, 1430
SmlI	CTYRAG	2 cut(s)	537, 1415
SmoI	CTYRAG	2 cut(s)	537, 1415
Sse9I	AATT	9 cut(s)	33, 204, 531, 586, 719, 1142, 1231, 1299, 1537
SsiI	CCGC	5 cut(s)	178, 233, 246, 468, 1069
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	1 cut(s)	1452
StyD4I	CCNGG	1 cut(s)	1060
StyI	CCWWGG	2 cut(s)	636, 750
TaaI	ACNGT	3 cut(s)	101, 797, 1429
TaiI	ACGT	2 cut(s)	395, 612
TaqI	TCGA	4 cut(s)	55, 129, 519, 1274
TasI	AATT	9 cut(s)	33, 204, 531, 586, 719, 1142, 1231, 1299, 1537
TatI	WGTACW	1 cut(s)	1333
TfiI	GAWTC	5 cut(s)	353, 560, 931, 988, 1546
Tru1I	TTAA	8 cut(s)	282, 524, 941, 1107, 1148, 1416, 1499, 1536
Tru9I	TTAA	8 cut(s)	282, 524, 941, 1107, 1148, 1416, 1499, 1536
TscAI	CASTG	3 cut(s)	128, 653, 1432
TseFI	GTSAC	1 cut(s)	997
TseI	GCWGC	3 cut(s)	228, 856, 1012
Tsp45I	GTSAC	1 cut(s)	997
TspDTI	ATGAA	8 cut(s)	181, 397, 582, 671, 783, 1185, 1294, 1304
TspGWI	ACGGA	1 cut(s)	1279
TspRI	CASTG	3 cut(s)	128, 653, 1432
Vha464I	CTTAAG	1 cut(s)	1415
XapI	RAATTY	6 cut(s)	33, 204, 531, 719, 1231, 1299
XspI	CTAG	1 cut(s)	1452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.