Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002885

Physical Location & Seq

Genomic Coordinates Reverse (-)

31124444 .. 31134242

Gene Structure 9799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG177400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGCCGAGGAAGAGTAAAGCAAAGAAGGAAGAGATTTGCGAGGAGGTTTGCTTCTCTTGCAAAGATGGAGGACTCCTCTTGGTCTGCGACTACAAGGGTTGTCTTAAAGCTTATCATCCGGAATGTGCGGGAAAAGATGACTCTTTTGTGGAGACTGCACGGCGCTGGAACTGCAAATGGCATTCTTGCTTCATGTGCCATAAGGCTGCAAAGTTTCAATGCTTTTGCTGCCCACAAGCTGTATGCGGACGCTGCCTCTGTGACTCTGAGTTTGTGGTTATTAAAGTGGATAGAGGATTTTGCAATCATTGCCTGAAGCTTGCTGTACTCATAGAAGAAAACTTGGATGCTGATTCTGACGGGGGCAGAGTTGACTTCAAAGATATAAACACATTCGAGTACTTATTTAAGGAGTATTGGCAGGTAATGAAAAAGAAAGAACGCTTGTCTGCAGAACATGTCCACTCTGCGAAAAAGTTATTAAAGAAGGGAAAGAACTACGTGCGTGACTTTGATTCGAGTATAATTTGTAAGAAAGATGAAAAATTTTCAGAATCCGATGAAGAAAGTGATCTTCAGGTGTCTGATTATGATGGAGTGGAAAGTGGAGAAGAATACATGCCAGTTGCCAAAAAGAAGAGATCCAAGGGAAAACAGTGTGCAGTGAAAAGAAAAGTAGAAGCAGAGAAACGAGAATTTATGGGATGGGGATCAAAGTCTCTCCTAGAATTTCTTGCTTCTATGGGTAAAGATACATCCAAGGAGTTGTCACAGTATGAAGTCACCTCTGTGGTTACAGACTATTGTAAAGAAAACAAGCTTTTTGACCCAGAAAAGAAGAAGAAAGTAATTTGCGATGCAACCTTGCAGTCTCTTTTAGGGAGGAAAACATTGAATAAAAATAGTATATATAACCTTCTGACTTCCCATTTTGCTGACAATCTGGAAGAGTCAACGGAGGGGGATGAGAGTGGAAGTAGTTCCGAAGACAAAGATGAGAGTTTTATGGGTACCTGTAAAAGGCAGATCAAGTTGAGCCCTAAAGTACCAGATGTGCAGAAAAGCTGTTTTGCTTCCATAGTTCCTGAAAACATCAAGCTTGTGTACCTGAAGAGGAGCTTAGTGGAGGAATTGTTAAAGCAACCTGAGACTTTTGGTGAGAAAGTAACAGGATGTTTTGTGAGAGTCAAATCTGACCCAAATGATTATTCACAGAAAAATTCTCACCAGCTCTTGCAAATTAAAGGTATAAAGGAAATTTTGAGGAACGGCAGAGAGGATACAGAAATACTTATGCAATTTTTCAGCAATTTTAAAGATTTACCTGTTTCCAAGCTGTCAGATGATGACTTCTGTAAGGAAGAATGTGAAGATTTGCATCAGAGAGTGAAAGATGGCCTCCTTAAAAAGCCAACTATTGTGGAGCTTGAACAGAAGGCTAGAAGTCTACATGAGAATATAACAAAGCACTGGCTTGCAAGAGAACTGAATCTGTTGCAGAAGCGCATTGACCTGGCAAATGAAAAAGGATGGAGGAGAGAGCTTGATGCGTACATGAATAAGAAGCTGCTACTTGAAACACCATCAGAACAATCACGGCTGTTAAATGAGGTTCCGGAAGTAATTGCAGCCATAGAAAAATGTGATCCTGTTCTTGAGTACTCCAGAAGCCAGGATAAACAAGGAAATGATGGCTCTTCCGAATCTGCCCCCAGAGAATCTCCTCAAACTCCTGGCACTGCTCTAGCCAATGGAACCTCATGGCGTGCAAATGGCAGAACAGATCCTGCAGGTTCACTGCTAGACCAGGAAAGAGACCTGGAGGGTGCAGCAGCTAAACGTAAGAGAAAGCAGGCTTCATCAAACTTTGAACAGAGCTCTAGTATAGATGGTTCAAATGGTGACCATGAGAGAGACCTGGAAGATGCAAAGGATAGATCTAGGAGAAAGAAAGTTCCTACGATTCATGACTGCAAGCAGTCTCCTTGCATTCCATCTGGTCAGGCAGCAGAACTAGAGGAACCTAAAGTAGCTCGACTAGAAAGGATGAACTGTGAAAGCACATCTGAAGTTAAGGTAATTGAGTTGAGCGATGACGATGAAGATGTAATGGTTTCAGTTAGAACACCTGCACTTGAAGTCCCAGGTTCTGATTTATGGTATTGTATGAGTCCACTTGGTGAAATGAGGGGCCCCTATAAATTGTCATTGCTAAAGCTATGGAGCGTCTCGAGTGGCAATGAATTAAGATACAAGGTTTGGAGAGTGGGTCAGAGCAAAGAGGAGGCAATCTTTCTCAATGATGCCATTCACGGAAATTTTCCAACATGTAGAAATGCTTCCAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

783

Amino Acids

88.92

Weight (kDa)

6.36

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	239 - 311	1.4e-12	SWIB/MDM2 domain
SWIB_eIF2D	PF26291	240 - 296	3.1e-07	eIF2D, SWIB domain
Plus-3	PF03126	364 - 463	4.8e-17	Plus-3 domain
NERD_plant	PF25980	486 - 534	5.4e-21	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63700 AT5G63700
fragaria_vesca	FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310 FvH4_2g12310
malus_domestica	MD15G1440700.v1.1
prunus_persica	Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1 Prupe.1G582800_v2.0.a1
pyrus_communis	pycom15g38850
rosa_chinensis	RchiOBHm_Chr6g0272281 RchiOBHm_Chr6g0272291
rosa_laevigata	RLG00000013684 RLG00000013685
rosa_multiflora	Rmu_co8463891.1_g000001 Rmu_sc0004424.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196450
rosa_rugosa	Rorug06G0067400
rosa_samantha	Rh6AG184100 Rh6BG187300 Rh6CG185600 Rh6DG177400
rosa_wichuraiana	Rw6G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2137
Acc36I	ACCTGC	3 cut(s)	412, 1781, 2137
Acc65I	GGTACC	1 cut(s)	1010
AccB1I	GGYRCC	1 cut(s)	1010
AccI	GTMKAC	1 cut(s)	1447
AccIII	TCCGGA	2 cut(s)	118, 1615
AciI	CCGC	2 cut(s)	128, 246
AclWI	GGATC	4 cut(s)	636, 718, 1640, 1778
AcsI	RAATTY	6 cut(s)	545, 695, 728, 1219, 1257, 2317
AcuI	CTGAAG	4 cut(s)	335, 560, 1130, 2088
AdeI	CACNNNGTG	1 cut(s)	2180
AfaI	GTAC	7 cut(s)	327, 401, 1012, 1047, 1106, 1553, 1661
AfiI	CCNNNNNNNGG	1 cut(s)	1020
AflIII	ACRYGT	2 cut(s)	457, 2327
AgsI	TTSAA	8 cut(s)	218, 379, 895, 1430, 1577, 1871, 1896, 2138
AjnI	CCWGG	7 cut(s)	1512, 1671, 1732, 1806, 1818, 1917, 2143
AjuI	GAANNNNNNNTTGG	2 cut(s)	1192, 1224
AleI	CACNNNNGTG	1 cut(s)	788
Alw21I	GWGCWC	1 cut(s)	1880
Alw26I	GTCTC	8 cut(s)	146, 723, 876, 1142, 1809, 1908, 1986, 2233
AlwI	GGATC	4 cut(s)	636, 718, 1640, 1778
AlwNI	CAGNNNCTG	2 cut(s)	1787, 2150
Ama87I	CYCGRG	1 cut(s)	2230
Aor13HI	TCCGGA	2 cut(s)	118, 1615
AoxI	GGCC	2 cut(s)	1396, 2191
ApaI	GGGCCC	1 cut(s)	2195
ApeKI	GCWGC	8 cut(s)	206, 228, 252, 1567, 1628, 1829, 1832, 2006
ApoI	RAATTY	6 cut(s)	545, 695, 728, 1219, 1257, 2317
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	2 cut(s)	979, 2338
Asp718I	GGTACC	1 cut(s)	1010
AspLEI	GCGC	2 cut(s)	165, 1506
AspS9I	GGNCC	2 cut(s)	2191, 2192
AsuHPI	GGTGA	5 cut(s)	775, 1169, 1217, 1913, 2192
AvaI	CYCGRG	1 cut(s)	2230
BaeGI	GKGCMC	1 cut(s)	2195
BanI	GGYRCC	1 cut(s)	1010
BanII	GRGCYC	3 cut(s)	1040, 1880, 2195
BarI	GAAGNNNNNNTAC	1 cut(s)	2323
BbsI	GAAGAC	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	1880
BbvI	GCAGC	8 cut(s)	193, 215, 239, 1554, 1640, 1841, 1844, 2018
BccI	CCATC	9 cut(s)	59, 587, 699, 1388, 1524, 1591, 1685, 1883, 2002
BceAI	ACGGC	3 cut(s)	176, 1285, 1613
BciT130I	CCWGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
BciVI	GTATCC	1 cut(s)	1273
BcoDI	GTCTC	8 cut(s)	146, 723, 876, 1142, 1809, 1908, 1986, 2233
BfaI	CTAG	8 cut(s)	725, 1440, 1745, 1802, 1881, 1941, 2015, 2039
BfmI	CTRYAG	2 cut(s)	450, 1788
BfoI	RGCGCY	1 cut(s)	166
BfuAI	ACCTGC	3 cut(s)	412, 1781, 2137
BfuI	GTATCC	1 cut(s)	1273
BglII	AGATCT	1 cut(s)	1937
BisI	GCNGC	8 cut(s)	207, 229, 253, 1568, 1629, 1830, 1833, 2007
BlsI	GCNGC	8 cut(s)	208, 230, 254, 1569, 1630, 1831, 1834, 2008
BmcAI	AGTACT	2 cut(s)	401, 1661
Bme1390I	CCNGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
BmeT110I	CYCGRG	1 cut(s)	2230
BmgT120I	GGNCC	2 cut(s)	2191, 2192
BmiI	GGNNCC	7 cut(s)	1012, 1614, 1756, 2022, 2192, 2193, 2194
BmrFI	CCNGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
BmsI	GCATC	6 cut(s)	337, 847, 1387, 1537, 1915, 2293
BpiI	GAAGAC	1 cut(s)	993
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	2 cut(s)	1648, 1841
BpuEI	CTTGAG	1 cut(s)	1676
BsaAI	YACGTR	1 cut(s)	502
BsaBI	GATNNNNATC	2 cut(s)	709, 1377
BsaI	GGTCTC	2 cut(s)	1809, 1908
BsaJI	CCNNGG	4 cut(s)	5, 645, 759, 2143
BsaWI	WCCGGW	2 cut(s)	118, 1615
BsaXI	ACNNNNNCTCC	4 cut(s)	1118, 1148, 2254, 2284
Bsc4I	CCNNNNNNNGG	1 cut(s)	1020
Bse1I	ACTGG	2 cut(s)	623, 1475
Bse3DI	GCAATG	3 cut(s)	307, 2207, 2245
Bse8I	GATNNNNATC	2 cut(s)	709, 1377
BseAI	TCCGGA	2 cut(s)	118, 1615
BseBI	CCWGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
BseDI	CCNNGG	4 cut(s)	5, 645, 759, 2143
BseGI	GGATG	8 cut(s)	115, 352, 710, 755, 970, 1178, 1535, 2052
BseJI	GATNNNNATC	2 cut(s)	709, 1377
BseLI	CCNNNNNNNGG	1 cut(s)	1020
BseMI	GCAATG	3 cut(s)	307, 2207, 2245
BseMII	CTCAG	2 cut(s)	258, 1137
BseNI	ACTGG	2 cut(s)	623, 1475
BseRI	GAGGAG	6 cut(s)	56, 65, 1129, 1549, 1713, 2297
BseSI	GKGCMC	1 cut(s)	2195
BseXI	GCAGC	8 cut(s)	193, 215, 239, 1554, 1640, 1841, 1844, 2018
BsgI	GTGCAG	5 cut(s)	141, 681, 1076, 1848, 2115
BshFI	GGCC	2 cut(s)	1398, 2193
BshNI	GGYRCC	1 cut(s)	1010
BsiHKAI	GWGCWC	1 cut(s)	1880
BsiHKCI	CYCGRG	1 cut(s)	2230
BsiSI	CCGG	2 cut(s)	119, 1616
BslFI	GGGAC	1 cut(s)	2126
BslI	CCNNNNNNNGG	1 cut(s)	1020
BsmAI	GTCTC	8 cut(s)	146, 723, 876, 1142, 1809, 1908, 1986, 2233
BsmBI	CGTCTC	1 cut(s)	2233
BsmFI	GGGAC	1 cut(s)	2126
BsmI	GAATGC	2 cut(s)	181, 1989
BsnI	GGCC	2 cut(s)	1398, 2193
Bso31I	GGTCTC	2 cut(s)	1809, 1908
BsoBI	CYCGRG	1 cut(s)	2230
Bsp120I	GGGCCC	1 cut(s)	2191
Bsp1286I	GDGCHC	3 cut(s)	1040, 1880, 2195
Bsp13I	TCCGGA	2 cut(s)	118, 1615
Bsp143I	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
BspACI	CCGC	2 cut(s)	128, 246
BspANI	GGCC	2 cut(s)	1398, 2193
BspCNI	CTCAG	2 cut(s)	259, 1138
BspEI	TCCGGA	2 cut(s)	118, 1615
BspHI	TCATGA	1 cut(s)	1966
BspLI	GGNNCC	7 cut(s)	1012, 1614, 1756, 2022, 2192, 2193, 2194
BspMAI	CTGCAG	2 cut(s)	454, 1792
BspMI	ACCTGC	3 cut(s)	412, 1781, 2137
BspPI	GGATC	4 cut(s)	636, 718, 1640, 1778
BspQI	GCTCTTC	1 cut(s)	1702
BspT107I	GGYRCC	1 cut(s)	1010
BspTNI	GGTCTC	2 cut(s)	1809, 1908
BsrDI	GCAATG	3 cut(s)	307, 2207, 2245
BsrI	ACTGG	2 cut(s)	623, 1475
BssECI	CCNNGG	4 cut(s)	5, 645, 759, 2143
BssMI	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
BssT1I	CCWWGG	2 cut(s)	645, 759
Bst2UI	CCWGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
Bst4CI	ACNGT	3 cut(s)	657, 774, 2054
Bst6I	CTCTTC	6 cut(s)	5, 24, 632, 942, 1106, 1702
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	5 cut(s)	321, 1476, 1767, 1854, 1976
BstDEI	CTNAG	3 cut(s)	267, 1120, 1146
BstEII	GGTNACC	1 cut(s)	1901
BstENI	CCTNNNNNAGG	1 cut(s)	1018
BstF5I	GGATG	8 cut(s)	115, 352, 710, 755, 970, 1178, 1535, 2052
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	165, 1506
BstKTI	GATC	7 cut(s)	574, 644, 713, 1029, 1648, 1786, 1940
BstMAI	GTCTC	8 cut(s)	146, 723, 876, 1142, 1809, 1908, 1986, 2233
BstMBI	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 171, 195, 228, 252, 309
BstNI	CCWGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
BstNSI	RCATGY	3 cut(s)	461, 622, 2331
BstPI	GGTNACC	1 cut(s)	1901
BstSCI	CCNGG	7 cut(s)	1512, 1671, 1732, 1806, 1818, 1917, 2143
BstSFI	CTRYAG	2 cut(s)	450, 1788
BstSLI	GKGCMC	1 cut(s)	2195
BstV1I	GCAGC	8 cut(s)	193, 215, 239, 1554, 1640, 1841, 1844, 2018
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	3 cut(s)	641, 1783, 1937
BstYI	RGATCY	3 cut(s)	641, 1783, 1937
BsuI	GTATCC	1 cut(s)	1273
BsuRI	GGCC	2 cut(s)	1398, 2193
BtgZI	GCGATG	2 cut(s)	870, 2106
BtsCI	GGATG	8 cut(s)	115, 352, 710, 755, 970, 1178, 1535, 2052
BtsI	GCAGTG	3 cut(s)	669, 1737, 1796
BtsIMutI	CAGTG	5 cut(s)	662, 669, 1468, 1737, 1796
BveI	ACCTGC	3 cut(s)	412, 1781, 2137
Cac8I	GCNNGC	5 cut(s)	321, 1476, 1767, 1854, 1976
CaiI	CAGNNNCTG	2 cut(s)	1787, 2150
CciI	TCATGA	1 cut(s)	1966
CfoI	GCGC	2 cut(s)	165, 1506
Cfr13I	GGNCC	2 cut(s)	2191, 2192
CseI	GACGC	2 cut(s)	258, 2215
Csp6I	GTAC	7 cut(s)	326, 400, 1011, 1046, 1105, 1552, 1660
CspCI	CAANNNNNGTGG	2 cut(s)	1401, 1436
CviAII	CATG	9 cut(s)	193, 458, 619, 1451, 1555, 1761, 1907, 1967, 2328
CviQI	GTAC	7 cut(s)	326, 400, 1011, 1046, 1105, 1552, 1660
DdeI	CTNAG	3 cut(s)	267, 1120, 1146
DpnI	GATC	7 cut(s)	573, 643, 712, 1028, 1647, 1785, 1939
DpnII	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
DraI	TTTAAA	1 cut(s)	1315
DraIII	CACNNNGTG	1 cut(s)	2180
Eam1104I	CTCTTC	6 cut(s)	5, 24, 632, 942, 1106, 1702
EarI	CTCTTC	6 cut(s)	5, 24, 632, 942, 1106, 1702
Ecl136II	GAGCTC	1 cut(s)	1878
Eco130I	CCWWGG	2 cut(s)	645, 759
Eco24I	GRGCYC	3 cut(s)	1040, 1880, 2195
Eco31I	GGTCTC	2 cut(s)	1809, 1908
Eco53kI	GAGCTC	1 cut(s)	1878
Eco57I	CTGAAG	4 cut(s)	335, 560, 1130, 2088
Eco88I	CYCGRG	1 cut(s)	2230
Eco91I	GGTNACC	1 cut(s)	1901
EcoICRI	GAGCTC	1 cut(s)	1878
EcoNI	CCTNNNNNAGG	1 cut(s)	1018
EcoO109I	RGGNCCY	2 cut(s)	2191, 2192
EcoO65I	GGTNACC	1 cut(s)	1901
EcoRII	CCWGG	7 cut(s)	1512, 1671, 1732, 1806, 1818, 1917, 2143
EcoT14I	CCWWGG	2 cut(s)	645, 759
EcoT38I	GRGCYC	3 cut(s)	1040, 1880, 2195
ErhI	CCWWGG	2 cut(s)	645, 759
Esp3I	CGTCTC	1 cut(s)	2233
FaeI	CATG	9 cut(s)	196, 461, 622, 1454, 1558, 1764, 1910, 1970, 2331
FalI	AAGNNNNNCTT	2 cut(s)	1103, 1135
FaqI	GGGAC	1 cut(s)	2126
FatI	CATG	9 cut(s)	192, 457, 618, 1450, 1554, 1760, 1906, 1966, 2327
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	1447
Fnu4HI	GCNGC	8 cut(s)	207, 229, 253, 1568, 1629, 1830, 1833, 2007
FokI	GGATG	8 cut(s)	102, 359, 717, 742, 977, 1185, 1542, 2059
FriOI	GRGCYC	3 cut(s)	1040, 1880, 2195
Fsp4HI	GCNGC	8 cut(s)	207, 229, 253, 1568, 1629, 1830, 1833, 2007
FspBI	CTAG	8 cut(s)	725, 1440, 1745, 1802, 1881, 1941, 2015, 2039
GlaI	GCGC	2 cut(s)	164, 1505
GluI	GCNGC	8 cut(s)	207, 229, 253, 1568, 1629, 1830, 1833, 2007
GsuI	CTGGAG	2 cut(s)	1648, 1841
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	1398, 2193
HapII	CCGG	2 cut(s)	119, 1616
HgaI	GACGC	2 cut(s)	258, 2215
HhaI	GCGC	2 cut(s)	165, 1506
Hin1II	CATG	9 cut(s)	196, 461, 622, 1454, 1558, 1764, 1910, 1970, 2331
Hin6I	GCGC	2 cut(s)	163, 1504
HinP1I	GCGC	2 cut(s)	163, 1504
HincII	GTYRAC	2 cut(s)	373, 954
HindII	GTYRAC	2 cut(s)	373, 954
HindIII	AAGCTT	4 cut(s)	108, 317, 818, 1097
HpaII	CCGG	2 cut(s)	119, 1616
HphI	GGTGA	5 cut(s)	775, 1169, 1217, 1913, 2192
Hpy166II	GTNNAC	7 cut(s)	373, 463, 954, 1105, 1448, 1796, 2174
Hpy188III	TCNNGA	8 cut(s)	119, 944, 1085, 1616, 1655, 1665, 1967, 2230
Hpy8I	GTNNAC	7 cut(s)	373, 463, 954, 1105, 1448, 1796, 2174
HpyAV	CCTTC	4 cut(s)	19, 481, 926, 1429
HpyCH4III	ACNGT	3 cut(s)	657, 774, 2054
HpyCH4IV	ACGT	2 cut(s)	501, 1840
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 171, 195, 228, 252, 309
HpyF3I	CTNAG	3 cut(s)	267, 1120, 1146
HpySE526I	ACGT	2 cut(s)	501, 1840
Hsp92II	CATG	9 cut(s)	196, 461, 622, 1454, 1558, 1764, 1910, 1970, 2331
HspAI	GCGC	2 cut(s)	163, 1504
Kpn2I	TCCGGA	2 cut(s)	118, 1615
KpnI	GGTACC	1 cut(s)	1014
Kzo9I	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
LguI	GCTCTTC	1 cut(s)	1702
LmnI	GCTCC	3 cut(s)	1116, 1423, 2223
Lsp1109I	GCAGC	8 cut(s)	193, 215, 239, 1554, 1640, 1841, 1844, 2018
LweI	GCATC	6 cut(s)	337, 847, 1387, 1537, 1915, 2293
MaeI	CTAG	8 cut(s)	725, 1440, 1745, 1802, 1881, 1941, 2015, 2039
MaeII	ACGT	2 cut(s)	501, 1840
MaeIII	GTNAC	7 cut(s)	260, 506, 768, 781, 793, 1165, 1901
MalI	GATC	7 cut(s)	573, 643, 712, 1028, 1647, 1785, 1939
MboI	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
MflI	RGATCY	3 cut(s)	641, 1783, 1937
MhlI	GDGCHC	3 cut(s)	1040, 1880, 2195
MlyI	GAGTC	6 cut(s)	66, 134, 257, 959, 1194, 2179
MmeI	TCCRAC	1 cut(s)	2348
MroI	TCCGGA	2 cut(s)	118, 1615
MroXI	GAANNNNTTC	2 cut(s)	979, 2338
MslI	CAYNNNNRTG	1 cut(s)	788
MspI	CCGG	2 cut(s)	119, 1616
MspR9I	CCNGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
Mva1269I	GAATGC	2 cut(s)	181, 1989
MvaI	CCWGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
MwoI	GCNNNNNNNGC	6 cut(s)	57, 171, 195, 228, 252, 309
NdeII	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
NlaIII	CATG	9 cut(s)	196, 461, 622, 1454, 1558, 1764, 1910, 1970, 2331
NlaIV	GGNNCC	7 cut(s)	1012, 1614, 1756, 2022, 2192, 2193, 2194
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	5 cut(s)	260, 506, 768, 781, 1901
NspI	RCATGY	3 cut(s)	461, 622, 2331
OliI	CACNNNNGTG	1 cut(s)	788
PaeR7I	CTCGAG	1 cut(s)	2230
PagI	TCATGA	1 cut(s)	1966
PaqCI	CACCTGC	1 cut(s)	2137
PciI	ACATGT	2 cut(s)	457, 2327
PciSI	GCTCTTC	1 cut(s)	1702
PctI	GAATGC	2 cut(s)	181, 1989
PdmI	GAANNNNTTC	2 cut(s)	979, 2338
PfeI	GAWTC	7 cut(s)	353, 515, 554, 1489, 1703, 1718, 1963
PkrI	GCNGC	8 cut(s)	208, 230, 254, 1569, 1630, 1831, 1834, 2008
PleI	GAGTC	6 cut(s)	66, 134, 257, 958, 1193, 2178
PpsI	GAGTC	6 cut(s)	66, 134, 257, 958, 1193, 2178
Ppu21I	YACGTR	1 cut(s)	502
PscI	ACATGT	2 cut(s)	457, 2327
Psp124BI	GAGCTC	1 cut(s)	1880
Psp6I	CCWGG	7 cut(s)	1512, 1671, 1732, 1806, 1818, 1917, 2143
PspEI	GGTNACC	1 cut(s)	1901
PspGI	CCWGG	7 cut(s)	1512, 1671, 1732, 1806, 1818, 1917, 2143
PspN4I	GGNNCC	7 cut(s)	1012, 1614, 1756, 2022, 2192, 2193, 2194
PspOMI	GGGCCC	1 cut(s)	2191
PspPI	GGNCC	2 cut(s)	2191, 2192
PsrI	GAACNNNNNNTAC	2 cut(s)	1876, 1908
PstI	CTGCAG	2 cut(s)	454, 1792
PstNI	CAGNNNCTG	2 cut(s)	1787, 2150
PsuI	RGATCY	3 cut(s)	641, 1783, 1937
RsaI	GTAC	7 cut(s)	327, 401, 1012, 1047, 1106, 1553, 1661
RsaNI	GTAC	7 cut(s)	326, 400, 1011, 1046, 1105, 1552, 1660
RseI	CAYNNNNRTG	1 cut(s)	788
SacI	GAGCTC	1 cut(s)	1880
SapI	GCTCTTC	1 cut(s)	1702
SatI	GCNGC	8 cut(s)	207, 229, 253, 1568, 1629, 1830, 1833, 2007
Sau3AI	GATC	7 cut(s)	571, 641, 710, 1026, 1645, 1783, 1937
Sau96I	GGNCC	2 cut(s)	2191, 2192
SbfI	CCTGCAGG	1 cut(s)	1792
ScaI	AGTACT	2 cut(s)	401, 1661
SchI	GAGTC	6 cut(s)	66, 134, 257, 959, 1194, 2179
ScrFI	CCNGG	7 cut(s)	1514, 1673, 1734, 1808, 1820, 1919, 2145
SdaI	CCTGCAGG	1 cut(s)	1792
SduI	GDGCHC	3 cut(s)	1040, 1880, 2195
SfaNI	GCATC	6 cut(s)	337, 847, 1387, 1537, 1915, 2293
SfcI	CTRYAG	2 cut(s)	450, 1788
Sfr274I	CTCGAG	1 cut(s)	2230
SlaI	CTCGAG	1 cut(s)	2230
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	1655, 2230
SmoI	CTYRAG	2 cut(s)	1655, 2230
Sse8387I	CCTGCAGG	1 cut(s)	1792
SsiI	CCGC	2 cut(s)	128, 246
SspMI	CTAG	8 cut(s)	725, 1440, 1745, 1802, 1881, 1941, 2015, 2039
SstI	GAGCTC	1 cut(s)	1880
StyD4I	CCNGG	7 cut(s)	1512, 1671, 1732, 1806, 1818, 1917, 2143
StyI	CCWWGG	2 cut(s)	645, 759
TaaI	ACNGT	3 cut(s)	657, 774, 2054
TaiI	ACGT	2 cut(s)	504, 1843
TaqI	TCGA	4 cut(s)	396, 518, 2035, 2231
TatI	WGTACW	3 cut(s)	325, 399, 1659
TfiI	GAWTC	7 cut(s)	353, 515, 554, 1489, 1703, 1718, 1963
TscAI	CASTG	5 cut(s)	662, 669, 1475, 1744, 1803
TseFI	GTSAC	5 cut(s)	260, 506, 768, 781, 1901
TseI	GCWGC	8 cut(s)	206, 228, 252, 1567, 1628, 1829, 1832, 2006
Tsp45I	GTSAC	5 cut(s)	260, 506, 768, 781, 1901
TspGWI	ACGGA	2 cut(s)	971, 2328
TspRI	CASTG	5 cut(s)	662, 669, 1475, 1744, 1803
XagI	CCTNNNNNAGG	1 cut(s)	1018
XapI	RAATTY	6 cut(s)	545, 695, 728, 1219, 1257, 2317
XceI	RCATGY	3 cut(s)	461, 622, 2331
XhoI	CTCGAG	1 cut(s)	2230
XmiI	GTMKAC	1 cut(s)	1447
XmnI	GAANNNNTTC	2 cut(s)	979, 2338
XspI	CTAG	8 cut(s)	725, 1440, 1745, 1802, 1881, 1941, 2015, 2039
ZrmI	AGTACT	2 cut(s)	401, 1661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.