Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Reverse (-)

4316661 .. 4318381

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCGACCTCCCAGAGGCGGCGGAGGGTTCAGAGGCTCCCGCGGGCGCAGTGGTGGCGGTCGCGGGTTTAACAGTGGCGGTCGCGGTTTCTTCCGCGATGAGGGCCCTCCTTCCGAAGTCATAGAGGTTTCAACATTTGTTCATGCATGTGAGGGTGAGGCAGTCACGAAGCTCACGAATTCGAAGATACCCCACTTTAATGCCCCAATCTATCTGCAGAACAAGACTCAGATAGGGAAGGTTGATGAAATATTTGGTCCGATCAACGAATCTTACTTTTCAGTTAAAGTTATGGAAGGCATTGTGGCGACTTCGTATTCCCAGGGAGATAAGTTCTATATTGACCCAATGAAGCTTCTTCCTCTTGAAAGATTTCTTCCACAGCCAAAGTCCTTTCCTTGTACTGTGTCGAGTGACAATTCCTTGTCCCTAAAAAATTTGGACAGTTTCCTTCAGTTTACTTTAGTAGATGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

160

Amino Acids

17.36

Weight (kDa)

8.58

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gar1	PF04410	40 - 126	1.9e-27	Gar1/Naf1 RNA binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	42, 63, 84, 96
AciI	CCGC	9 cut(s)	18, 21, 40, 42, 57, 63, 78, 84, 94
AcsI	RAATTY	2 cut(s)	178, 436
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	3 cut(s)	14, 17, 100
AgsI	TTSAA	2 cut(s)	132, 368
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	172, 355
AluI	AGCT	2 cut(s)	172, 355
AoxI	GGCC	1 cut(s)	103
ApaI	GGGCCC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	178, 436
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	103, 104, 257
AsuHPI	GGTGA	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	103, 104, 257
BmiI	GGNNCC	2 cut(s)	37, 105
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	460
Bpu14I	TTCGAA	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	40, 321, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 17, 100
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	3 cut(s)	40, 321, 322
BseLI	CCNNNNNNNGG	3 cut(s)	14, 17, 100
BseMII	CTCAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	107
Bsh1236I	CGCG	4 cut(s)	42, 63, 84, 96
Bsh1285I	CGRYCG	2 cut(s)	61, 82
BshFI	GGCC	1 cut(s)	105
BsiEI	CGRYCG	2 cut(s)	61, 82
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	14, 17, 100
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	105
Bsp119I	TTCGAA	1 cut(s)	182
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	9 cut(s)	18, 21, 40, 42, 57, 63, 78, 84, 94
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	4 cut(s)	42, 63, 84, 96
BspLI	GGNNCC	2 cut(s)	37, 105
BspMAI	CTGCAG	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	40, 321, 322
BssMI	GATC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	3 cut(s)	74, 406, 446
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstFNI	CGCG	4 cut(s)	42, 63, 84, 96
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMCI	CGRYCG	2 cut(s)	61, 82
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 102
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	4 cut(s)	42, 63, 84, 96
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	40
BtgZI	GCGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 79
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	103, 104, 257
Cfr42I	CCGCGG	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	2 cut(s)	143, 147
CviJI	RGCY	5 cut(s)	36, 105, 172, 355, 385
CviKI_1	RGCY	5 cut(s)	36, 105, 172, 355, 385
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	103, 104
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	2 cut(s)	146, 150
FaiI	YATR	5 cut(s)	122, 144, 148, 293, 339
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	2 cut(s)	142, 146
FauI	CCCGC	3 cut(s)	35, 47, 56
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	19
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	146, 150
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	2 cut(s)	226, 269
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	4 cut(s)	32, 115, 231, 261
Hpy188III	TCNNGA	4 cut(s)	166, 175, 365, 477
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	4 cut(s)	120, 232, 290, 461
HpyCH4III	ACNGT	3 cut(s)	74, 406, 446
HpyCH4V	TGCA	2 cut(s)	146, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 102
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	146, 150
HspAI	GCGC	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	3 cut(s)	25, 308, 335
LweI	GCATC	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	163, 413
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	4 cut(s)	82, 196, 350, 368
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	3 cut(s)	178, 418, 436
MlyI	GAGTC	1 cut(s)	220
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	3 cut(s)	69, 198, 285
MslI	CAYNNNNRTG	2 cut(s)	147, 198
MspA1I	CMGCKG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	4 cut(s)	42, 63, 84, 96
MwoI	GCNNNNNNNGC	2 cut(s)	54, 102
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	2 cut(s)	146, 150
NlaIV	GGNNCC	2 cut(s)	37, 105
NmuCI	GTSAC	2 cut(s)	163, 413
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	182
PasI	CCCWGGG	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	37, 105
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	3 cut(s)	103, 104, 257
PstI	CTGCAG	1 cut(s)	219
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	2 cut(s)	147, 198
SacII	CCGCGG	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	69, 198, 285
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	3 cut(s)	103, 104, 257
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	5 cut(s)	10, 129, 174, 243, 357
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	215
Sfr303I	CCGCGG	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	182
SgrBI	CCGCGG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	2 cut(s)	147, 198
Sse9I	AATT	3 cut(s)	178, 418, 436
SsiI	CCGC	9 cut(s)	18, 21, 40, 42, 57, 63, 78, 84, 94
SspI	AATATT	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	74, 406, 446
TaqI	TCGA	2 cut(s)	182, 410
TasI	AATT	3 cut(s)	178, 418, 436
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	69, 198, 285
Tru9I	TTAA	3 cut(s)	69, 198, 285
TscAI	CASTG	2 cut(s)	55, 79
TseFI	GTSAC	2 cut(s)	163, 413
Tsp45I	GTSAC	2 cut(s)	163, 413
TspDTI	ATGAA	3 cut(s)	131, 261, 365
TspRI	CASTG	2 cut(s)	55, 79
VpaK11BI	GGWCC	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	2 cut(s)	178, 436
XceI	RCATGY	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	372
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.