Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Reverse (-)

10424239 .. 10425480

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTTTTCTTTTCTGCTTTTCAGAATATTTCCGTTTGGTTGTTGAGGAAGGGATCTGCTCCATTGAAGCTTGATATGGCCACACGGGCAAAGATTGTAAAATGTTCGGAGTCAATGTGGAAGCTAACATACTATGCCACTGTTGAAGCATGCATTCTCAGCATAACCTACCATGAGCCATGGTTCAGAGATACAAAAGAGTACTTTAAAGGCTGGCCAAACCAAGAGTTGCGGCTTCCCATAAAGCTTTTCTATATGTGTCAATGTGGATTCTACAGCTACAGCATTGCTGCCGTCCTTACATGGGAGACTCGAAGGAAGGATTTCGCGGTGATGATATCTCACCATGTAATTACTGTTCTCCTGATTGGGTTCTCATACATAACAAGTTTTTTTCGGATTGGCTCAATCATTCTTGCCCTACATGACGGAAGTGATGTATTTATGGAAACTGCTAAGGTTTTCAAGTATTCTGAGAAGGAGCTTGGGGCAAGTGTGTTCTTTGGATTTTTTGCTGTTTCGTGGGTCATACTGCGGTTAATATTCTTCCCTTTCTGGGTCATAAGCGCATCAAGCTATGATCTTTGTGACTGCTTGGATCTGTCGAAGCCCTCTCCCACAGCTCTGTATTATGCATTCAATACAATGTTACTGATGCTTTTTGTGTTCCACATATACTGGTGGGTTATGATTTGTTCAATGATAAGGAGACAGGTGAACAATAGAGGACAAGTTGGAGAAGATATTAGATCTGGTAAACCATATATTTTGCTTGAGAGTTTTAAATATTACAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

267

Amino Acids

31.23

Weight (kDa)

9.06

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	34 - 232	2.3e-48	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	329
AciI	CCGC	3 cut(s)	232, 329, 535
AclWI	GGATC	2 cut(s)	61, 606
AcoI	YGGCCR	2 cut(s)	78, 215
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	304, 556
AgsI	TTSAA	5 cut(s)	67, 146, 466, 640, 699
AluBI	AGCT	7 cut(s)	70, 124, 247, 279, 484, 576, 623
AluI	AGCT	7 cut(s)	70, 124, 247, 279, 484, 576, 623
Alw26I	GTCTC	2 cut(s)	302, 703
AlwI	GGATC	2 cut(s)	61, 606
AoxI	GGCC	2 cut(s)	78, 215
ApeKI	GCWGC	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	335, 343, 727
BalI	TGGCCA	2 cut(s)	80, 217
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbvI	GCAGC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	302, 703
BfmI	CTRYAG	2 cut(s)	274, 280
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	2 cut(s)	233, 291
BlsI	GCNGC	2 cut(s)	234, 292
BmcAI	AGTACT	1 cut(s)	203
BmsI	GCATC	2 cut(s)	578, 645
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 556
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	304, 556
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	172, 465
BseNI	ACTGG	1 cut(s)	683
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	80, 217
BslI	CCNNNNNNNGG	2 cut(s)	304, 556
BsmAI	GTCTC	2 cut(s)	302, 703
BsmI	GAATGC	2 cut(s)	153, 635
BsnI	GGCC	2 cut(s)	80, 217
Bsp143I	GATC	4 cut(s)	53, 580, 598, 749
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	3 cut(s)	232, 329, 535
BspANI	GGCC	2 cut(s)	80, 217
BspCNI	CTCAG	2 cut(s)	171, 466
BspFNI	CGCG	1 cut(s)	329
BspPI	GGATC	2 cut(s)	61, 606
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	4 cut(s)	53, 580, 598, 749
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	142, 358
BstC8I	GCNNGC	2 cut(s)	151, 215
BstDEI	CTNAG	3 cut(s)	158, 456, 474
BstDSI	CCRYGG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	4 cut(s)	56, 583, 601, 752
BstMAI	GTCTC	2 cut(s)	302, 703
BstMBI	GATC	4 cut(s)	53, 580, 598, 749
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 159, 573
BstNSI	RCATGY	1 cut(s)	153
BstSFI	CTRYAG	2 cut(s)	274, 280
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	3 cut(s)	53, 598, 749
BstYI	RGATCY	3 cut(s)	53, 598, 749
BsuRI	GGCC	2 cut(s)	80, 217
BtgI	CCRYGG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	151, 215
CfoI	GCGC	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	6 cut(s)	150, 173, 180, 303, 347, 425
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	158, 456, 474
DpnI	GATC	4 cut(s)	55, 582, 600, 751
DpnII	GATC	4 cut(s)	53, 580, 598, 749
DraI	TTTAAA	2 cut(s)	208, 784
EaeI	YGGCCR	2 cut(s)	78, 215
Eco130I	CCWWGG	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	179
EcoT22I	ATGCAT	2 cut(s)	155, 637
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	6 cut(s)	153, 176, 183, 306, 350, 428
FatI	CATG	6 cut(s)	149, 172, 179, 302, 346, 424
Fnu4HI	GCNGC	2 cut(s)	233, 291
Fsp4HI	GCNGC	2 cut(s)	233, 291
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	2 cut(s)	233, 291
HaeIII	GGCC	2 cut(s)	80, 217
HhaI	GCGC	1 cut(s)	569
Hin1II	CATG	6 cut(s)	153, 176, 183, 306, 350, 428
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HindIII	AAGCTT	2 cut(s)	68, 245
HinfI	GANTC	3 cut(s)	110, 270, 310
HphI	GGTGA	3 cut(s)	335, 343, 727
Hpy166II	GTNNAC	2 cut(s)	718, 758
Hpy188I	TCNGA	5 cut(s)	24, 109, 188, 399, 475
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	2 cut(s)	718, 758
HpyAV	CCTTC	4 cut(s)	43, 309, 313, 472
HpyCH4III	ACNGT	2 cut(s)	142, 358
HpyCH4V	TGCA	2 cut(s)	153, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 159, 573
HpyF3I	CTNAG	3 cut(s)	158, 456, 474
Hsp92II	CATG	6 cut(s)	153, 176, 183, 306, 350, 428
HspAI	GCGC	1 cut(s)	567
Kzo9I	GATC	4 cut(s)	53, 580, 598, 749
LmnI	GCTCC	2 cut(s)	64, 481
LpnPI	CCDG	6 cut(s)	199, 377, 541, 664, 698, 738
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	578, 645
MaeIII	GTNAC	2 cut(s)	587, 648
MalI	GATC	4 cut(s)	55, 582, 600, 751
MboI	GATC	4 cut(s)	53, 580, 598, 749
MboII	GAAGA	2 cut(s)	538, 752
MflI	RGATCY	3 cut(s)	53, 598, 749
MlsI	TGGCCA	2 cut(s)	80, 217
MluCI	AATT	1 cut(s)	351
MluNI	TGGCCA	2 cut(s)	80, 217
MlyI	GAGTC	2 cut(s)	119, 304
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	3 cut(s)	39, 622, 719
Mox20I	TGGCCA	2 cut(s)	80, 217
Mph1103I	ATGCAT	2 cut(s)	155, 637
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	2 cut(s)	80, 217
MseI	TTAA	3 cut(s)	207, 539, 783
Msp20I	TGGCCA	2 cut(s)	80, 217
Mva1269I	GAATGC	2 cut(s)	153, 635
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	86, 159, 573
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	4 cut(s)	53, 580, 598, 749
NlaIII	CATG	6 cut(s)	153, 176, 183, 306, 350, 428
NmuCI	GTSAC	1 cut(s)	587
NsiI	ATGCAT	2 cut(s)	155, 637
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PctI	GAATGC	2 cut(s)	153, 635
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	234, 292
PleI	GAGTC	2 cut(s)	118, 304
PpsI	GAGTC	2 cut(s)	118, 304
PsrI	GAACNNNNNNTAC	2 cut(s)	342, 374
PsuI	RGATCY	3 cut(s)	53, 598, 749
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	207, 539, 783
SatI	GCNGC	2 cut(s)	233, 291
Sau3AI	GATC	4 cut(s)	53, 580, 598, 749
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	2 cut(s)	119, 304
SfaNI	GCATC	2 cut(s)	578, 645
SfcI	CTRYAG	2 cut(s)	274, 280
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	3 cut(s)	232, 329, 535
SspI	AATATT	3 cut(s)	28, 543, 788
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	142, 358
TaqI	TCGA	2 cut(s)	313, 605
TasI	AATT	1 cut(s)	351
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	207, 539, 783
Tru9I	TTAA	3 cut(s)	207, 539, 783
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	587
TspGWI	ACGGA	2 cut(s)	22, 444
TspRI	CASTG	1 cut(s)	145
XceI	RCATGY	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	203
Zsp2I	ATGCAT	2 cut(s)	155, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.