Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011493

Physical Location & Seq

Genomic Coordinates Forward (+)

10590044 .. 10591831

Gene Structure 1788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTCCTATTTTCTATCAAGAGCTTTGATATGGGTTGGATCCTACCTTACTCCCTTACAATAAGTATGAATTCCAACTCAAGTAAATTAGAGCAAGTGATATTACAGGTTTGCCATAAAAACGAATCCAGAGCTTTAGGACATCAGGGTAATGTGATAAGGCATTTGACTTCTAATCAAAGGATTGTGGGTTCGAATCCCACCGGGCGTGCCAGCTTTTTTTCACCATTTGTTTTTTTGTTTTTTTTGTCTTTTCCCATCAATCCAAAATCCAAATCCCAAATCCCAAATCCCAAATCCCAAATCATCAATTATATCCCATTTAAAACAGCAGGCCCCACACTTGTCTTGTTCTCCACCAATCGCTGTCACTTGATCATTCATCATCAAAAACATACCTGCCCAAAATCCCCATTCCACTCCCTCACGTCCTCATCGCACCAGAAACCAACCAACCACCATCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCCCTCTGCTGCTGCTGCTGAGCTGCCATGGCCGCCTCCACGTTCCACTGTTCGACTTCATTACGCTCCCCCGCCATCCAAAACCCAATGCTCTCGCCTCTCCTCTCCCACTCTCCGCCAAATCTCTCATTCCCTTTCCGATTGCAGCAGCCCCAACGGGGACTCATCGTCGGCCTTCCAAATGTTCCTCCTCGCAGCCTCAAGATCCTCTCCGTTCGCGAATCCAAAGGTCTCCGGCGGTTACTGGAGACTCATGGGACAAATCAGTCATCAACAGTGAGACCCCTGTCCTCGTTGAATTTTATGCGAGCTGGTGTGGGCCGTGTAGGATGGTGCACCGGGTGATTGATGAAATTGCGGCTGAATATGCTGGGAAGCTCAAGTGCTATGTGCTCAACACAGATGTTGATTTGCAGGTTGTTGAGGACTATGAAATTAAGGCTGTGCCTGTAGTTTTGCTGTTCAAGAATGGGAAGAAATGTGACTCTGTGGTCGGTACCATGCCGAAGGAGTTCTATGTTGCTGCCATTGAGAGGGTTCTGAAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0010496 GO:0010497 GO:0010646 GO:0010647 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048509 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

350

Amino Acids

38.85

Weight (kDa)

9.63

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	247 - 343	4.8e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15570 AT2G15570
fragaria_vesca	FvH4_2g05860
malus_domestica	MD05G1082500.v1.1
prunus_persica	Prupe.8G126900_v2.0.a1
pyrus_communis	pycom05g07730
rosa_chinensis	RchiOBHm_Chr6g0257721
rosa_laevigata	RLG00000014718
rosa_multiflora	Rmu_co8430713.1_g000001 Rmu_sc0002079.1_g000028 Rmu_sc0006683.1_g000008 Rmu_sc0011315.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208900
rosa_rugosa	Rorug05G0568800
rosa_samantha	Rh1DG167100 Rh6AG085600 Rh6BG079900 Rh6CG074900 Rh6DG071800
rosa_wichuraiana	Rw6G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	764, 989
Acc36I	ACCTGC	2 cut(s)	407, 904
Acc65I	GGTACC	1 cut(s)	995
AccB1I	GGYRCC	1 cut(s)	995
AccII	CGCG	1 cut(s)	718
AciI	CCGC	5 cut(s)	532, 571, 615, 737, 857
AclWI	GGATC	3 cut(s)	34, 47, 698
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	2 cut(s)	70, 797
AdeI	CACNNNGTG	1 cut(s)	841
AfaI	GTAC	1 cut(s)	997
AfiI	CCNNNNNNNGG	2 cut(s)	657, 1032
AgsI	TTSAA	2 cut(s)	797, 964
AhdI	GACNNNNNGTC	1 cut(s)	666
AjiI	CACGTC	1 cut(s)	429
AloI	GAACNNNNNNTCC	2 cut(s)	175, 207
AluBI	AGCT	6 cut(s)	24, 134, 216, 522, 810, 877
AluI	AGCT	6 cut(s)	24, 134, 216, 522, 810, 877
Alw21I	GWGCWC	2 cut(s)	837, 894
Alw26I	GTCTC	3 cut(s)	735, 741, 773
Alw44I	GTGCAC	1 cut(s)	833
AlwI	GGATC	3 cut(s)	34, 47, 698
AoxI	GGCC	4 cut(s)	334, 529, 671, 818
ApaLI	GTGCAC	1 cut(s)	833
ApeKI	GCWGC	8 cut(s)	508, 511, 514, 522, 644, 647, 694, 1022
ApoI	RAATTY	2 cut(s)	70, 797
Asp700I	GAANNNNTTC	1 cut(s)	1010
Asp718I	GGTACC	1 cut(s)	995
AspS9I	GGNCC	2 cut(s)	335, 818
AsuC2I	CCSGG	2 cut(s)	205, 839
AsuHPI	GGTGA	2 cut(s)	216, 853
AsuII	TTCGAA	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	837
BamHI	GGATCC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	995
Bbv12I	GWGCWC	2 cut(s)	837, 894
BbvI	GCAGC	8 cut(s)	495, 498, 501, 509, 656, 659, 706, 1009
BccI	CCATC	4 cut(s)	266, 468, 582, 823
BceAI	ACGGC	1 cut(s)	805
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	2 cut(s)	205, 839
BcoDI	GTCTC	3 cut(s)	735, 741, 773
BfmI	CTRYAG	1 cut(s)	948
BfuAI	ACCTGC	2 cut(s)	407, 904
BlpI	GCTNAGC	1 cut(s)	518
Bme1390I	CCNGG	2 cut(s)	205, 839
BmeRI	GACNNNNNGTC	1 cut(s)	666
BmgBI	CACGTC	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	335, 818
BmiI	GGNNCC	3 cut(s)	41, 337, 997
BmrFI	CCNGG	2 cut(s)	205, 839
BoxI	GACNNNNGTC	1 cut(s)	785
BpmI	CTGGAG	1 cut(s)	765
Bpu1102I	GCTNAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	3 cut(s)	64, 684, 863
BpuMI	CCSGG	2 cut(s)	205, 839
BsaI	GGTCTC	2 cut(s)	735, 773
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 1032
Bse1I	ACTGG	1 cut(s)	748
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	574, 834
BseLI	CCNNNNNNNGG	2 cut(s)	657, 1032
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	2 cut(s)	591, 679
BseSI	GKGCMC	1 cut(s)	837
BseXI	GCAGC	8 cut(s)	495, 498, 501, 509, 656, 659, 706, 1009
BseYI	CCCAGC	1 cut(s)	869
Bsh1236I	CGCG	1 cut(s)	718
BshFI	GGCC	4 cut(s)	336, 531, 673, 820
BshNI	GGYRCC	1 cut(s)	995
BsiHKAI	GWGCWC	2 cut(s)	837, 894
BsiSI	CCGG	3 cut(s)	204, 734, 838
BslFI	GGGAC	2 cut(s)	673, 770
BslI	CCNNNNNNNGG	2 cut(s)	657, 1032
BsmAI	GTCTC	3 cut(s)	735, 741, 773
BsmFI	GGGAC	2 cut(s)	673, 770
BsnI	GGCC	4 cut(s)	336, 531, 673, 820
Bso31I	GGTCTC	2 cut(s)	735, 773
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	837, 894
Bsp143I	GATC	3 cut(s)	39, 375, 703
Bsp1720I	GCTNAGC	1 cut(s)	518
Bsp19I	CCATGG	1 cut(s)	526
Bsp68I	TCGCGA	1 cut(s)	718
BspACI	CCGC	5 cut(s)	532, 571, 615, 737, 857
BspANI	GGCC	4 cut(s)	336, 531, 673, 820
BspCNI	CTCAG	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	718
BspLI	GGNNCC	3 cut(s)	41, 337, 997
BspMI	ACCTGC	2 cut(s)	407, 904
BspPI	GGATC	3 cut(s)	34, 47, 698
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	995
BspTNI	GGTCTC	2 cut(s)	735, 773
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	3 cut(s)	39, 375, 703
BssT1I	CCWWGG	1 cut(s)	526
Bst4CI	ACNGT	2 cut(s)	549, 776
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	4 cut(s)	210, 214, 334, 808
BstDEI	CTNAG	1 cut(s)	518
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	574, 834
BstFNI	CGCG	1 cut(s)	718
BstKTI	GATC	3 cut(s)	42, 378, 706
BstMAI	GTCTC	3 cut(s)	735, 741, 773
BstMBI	GATC	3 cut(s)	39, 375, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	514, 528, 531, 866
BstPAI	GACNNNNGTC	1 cut(s)	785
BstSCI	CCNGG	2 cut(s)	203, 837
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	837
BstUI	CGCG	1 cut(s)	718
BstV1I	GCAGC	8 cut(s)	495, 498, 501, 509, 656, 659, 706, 1009
BstX2I	RGATCY	2 cut(s)	39, 703
BstYI	RGATCY	2 cut(s)	39, 703
BsuRI	GGCC	4 cut(s)	336, 531, 673, 820
BtgI	CCRYGG	1 cut(s)	526
BtgZI	GCGATG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	574, 834
BtsIMutI	CAGTG	2 cut(s)	545, 781
BtuMI	TCGCGA	1 cut(s)	718
BveI	ACCTGC	2 cut(s)	407, 904
Cac8I	GCNNGC	4 cut(s)	210, 214, 334, 808
Cfr13I	GGNCC	2 cut(s)	335, 818
Csp6I	GTAC	1 cut(s)	996
CviAII	CATG	3 cut(s)	527, 753, 1000
CviQI	GTAC	1 cut(s)	996
DdeI	CTNAG	1 cut(s)	518
DpnI	GATC	3 cut(s)	41, 377, 705
DpnII	GATC	3 cut(s)	39, 375, 703
DraI	TTTAAA	1 cut(s)	325
DraIII	CACNNNGTG	1 cut(s)	841
DrdI	GACNNNNNNGTC	2 cut(s)	764, 989
DriI	GACNNNNNGTC	1 cut(s)	666
DseDI	GACNNNNNNGTC	2 cut(s)	764, 989
EaeI	YGGCCR	1 cut(s)	529
Eam1105I	GACNNNNNGTC	1 cut(s)	666
EciI	GGCGGA	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	526
Eco31I	GGTCTC	2 cut(s)	735, 773
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	3 cut(s)	530, 756, 1003
FaqI	GGGAC	2 cut(s)	673, 770
FatI	CATG	3 cut(s)	526, 752, 999
FauI	CCCGC	1 cut(s)	578
FbaI	TGATCA	1 cut(s)	375
FokI	GGATG	2 cut(s)	561, 841
GsaI	CCCAGC	1 cut(s)	873
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	4 cut(s)	336, 531, 673, 820
HapII	CCGG	3 cut(s)	204, 734, 838
Hin1II	CATG	3 cut(s)	530, 756, 1003
HinfI	GANTC	6 cut(s)	125, 196, 661, 720, 749, 983
HpaII	CCGG	3 cut(s)	204, 734, 838
HphI	GGTGA	2 cut(s)	216, 853
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	2 cut(s)	639, 1041
Hpy188III	TCNNGA	5 cut(s)	19, 129, 701, 717, 964
Hpy8I	GTNNAC	1 cut(s)	835
Hpy99I	CGWCG	1 cut(s)	672
HpyAV	CCTTC	2 cut(s)	684, 1000
HpyCH4III	ACNGT	2 cut(s)	549, 776
HpyCH4IV	ACGT	2 cut(s)	428, 540
HpyCH4V	TGCA	3 cut(s)	644, 835, 913
HpyF10VI	GCNNNNNNNGC	4 cut(s)	514, 528, 531, 866
HpyF3I	CTNAG	1 cut(s)	518
HpySE526I	ACGT	2 cut(s)	428, 540
Hsp92II	CATG	3 cut(s)	530, 756, 1003
KpnI	GGTACC	1 cut(s)	999
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	39, 375, 703
LmnI	GCTCC	1 cut(s)	570
Lsp1109I	GCAGC	8 cut(s)	495, 498, 501, 509, 656, 659, 706, 1009
MaeII	ACGT	2 cut(s)	428, 540
MaeIII	GTNAC	3 cut(s)	368, 739, 980
MalI	GATC	3 cut(s)	41, 377, 705
MboI	GATC	3 cut(s)	39, 375, 703
MboII	GAAGA	1 cut(s)	985
MflI	RGATCY	2 cut(s)	39, 703
MhlI	GDGCHC	2 cut(s)	837, 894
MluCI	AATT	6 cut(s)	70, 86, 310, 797, 852, 933
MlyI	GAGTC	3 cut(s)	655, 743, 977
MmeI	TCCRAC	2 cut(s)	17, 99
MroXI	GAANNNNTTC	1 cut(s)	1010
MseI	TTAA	2 cut(s)	324, 936
MspI	CCGG	3 cut(s)	204, 734, 838
MspR9I	CCNGG	2 cut(s)	205, 839
MvnI	CGCG	1 cut(s)	718
MwoI	GCNNNNNNNGC	4 cut(s)	514, 528, 531, 866
NciI	CCSGG	2 cut(s)	205, 839
NcoI	CCATGG	1 cut(s)	526
NdeII	GATC	3 cut(s)	39, 375, 703
NlaIII	CATG	3 cut(s)	530, 756, 1003
NlaIV	GGNNCC	3 cut(s)	41, 337, 997
NmuCI	GTSAC	2 cut(s)	368, 980
NruI	TCGCGA	1 cut(s)	718
NspV	TTCGAA	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	1010
PfeI	GAWTC	3 cut(s)	125, 196, 720
PleI	GAGTC	3 cut(s)	655, 743, 977
PpsI	GAGTC	3 cut(s)	655, 743, 977
PshAI	GACNNNNGTC	1 cut(s)	785
PspFI	CCCAGC	1 cut(s)	869
PspN4I	GGNNCC	3 cut(s)	41, 337, 997
PspPI	GGNCC	2 cut(s)	335, 818
PsuI	RGATCY	2 cut(s)	39, 703
RruI	TCGCGA	1 cut(s)	718
RsaI	GTAC	1 cut(s)	997
RsaNI	GTAC	1 cut(s)	996
SaqAI	TTAA	2 cut(s)	324, 936
Sau3AI	GATC	3 cut(s)	39, 375, 703
Sau96I	GGNCC	2 cut(s)	335, 818
SchI	GAGTC	3 cut(s)	655, 743, 977
ScrFI	CCNGG	2 cut(s)	205, 839
SduI	GDGCHC	2 cut(s)	837, 894
SfcI	CTRYAG	1 cut(s)	948
SfuI	TTCGAA	1 cut(s)	194
SmlI	CTYRAG	3 cut(s)	79, 699, 878
SmoI	CTYRAG	3 cut(s)	79, 699, 878
Sse9I	AATT	6 cut(s)	70, 86, 310, 797, 852, 933
SsiI	CCGC	5 cut(s)	532, 571, 615, 737, 857
StyD4I	CCNGG	2 cut(s)	203, 837
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	2 cut(s)	549, 776
TaiI	ACGT	2 cut(s)	431, 543
TaqI	TCGA	2 cut(s)	194, 552
TasI	AATT	6 cut(s)	70, 86, 310, 797, 852, 933
TauI	GCSGC	2 cut(s)	534, 860
TfiI	GAWTC	3 cut(s)	125, 196, 720
Tru1I	TTAA	2 cut(s)	324, 936
Tru9I	TTAA	2 cut(s)	324, 936
TscAI	CASTG	2 cut(s)	552, 781
TseFI	GTSAC	2 cut(s)	368, 980
TseI	GCWGC	8 cut(s)	508, 511, 514, 522, 644, 647, 694, 1022
Tsp45I	GTSAC	2 cut(s)	368, 980
TspDTI	ATGAA	5 cut(s)	83, 371, 547, 864, 945
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	552, 781
VneI	GTGCAC	1 cut(s)	833
XapI	RAATTY	2 cut(s)	70, 797
XmnI	GAANNNNTTC	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.