pycom05g13890

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014239
Physical Location & Seq
Forward (+)
17439432 .. 17439682
251 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13890.1

Sequence Viewer

Length: 210 bp
ATGGGATACCCTTCCACAACAACAATCTACATTGTTGCTGGCGAGATATATGGTAGCAACAGCATGGCTGCTTTTCGCACTGAGTATCCAAATGTCTTCTCTCATAACACTCTTCCAACAGAAGAAGAGTTGGAGCCCTTCAAGCCTTACCAAAATTGGCTTACAGCCTTGGATTATATTGTACCAATGGAGAGCGGTGCAGGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

70

Amino Acids

7.71

Weight (kDa)

4.21

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 1 - 65 6.2e-12 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37980 AT5G01100
fragaria_vesca FvH4_6g12260
malus_domestica MD04G1144500.v1.1 MD12G1158500.v1.1
prunus_persica Prupe.6G268900_v2.0.a1
pyrus_communis pycom05g13890 pycom12g15050
rosa_chinensis RchiOBHm_Chr3g0464061
rosa_laevigata RLG00000024725
rosa_multiflora Rmu_sc0006492.1_g000019
rosa_roxburghii Rroxscaffold_6G00416010
rosa_rugosa Rorug03G0070500
rosa_samantha Rh3BG131600 Rh3CG133900 Rh3DG132900
rosa_wichuraiana Rw3G010760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 195
AciI CCGC 1 cut(s) 195
AfaI GTAC 1 cut(s) 183
AgsI TTSAA 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 55
BciVI GTATCC 1 cut(s) 96
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 138
BspACI CCGC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 117, 120
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 88
BsuI GTATCC 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 182
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 68, 136, 145, 160, 167
CviKI_1 RGCY 5 cut(s) 68, 136, 145, 160, 167
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 117, 120
EarI CTCTTC 2 cut(s) 117, 120
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 67
FaiI YATR 6 cut(s) 49, 51, 65, 105, 177, 208
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 69
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 21, 148
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 67
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 24, 186
Lsp1109I GCAGC 1 cut(s) 55
MbiI CCGCTC 1 cut(s) 195
MboII GAAGA 4 cut(s) 88, 104, 134, 137
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 154
MmeI TCCRAC 2 cut(s) 111, 140
MwoI GCNNNNNNNGC 1 cut(s) 142
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 135
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SatI GCNGC 1 cut(s) 69
SduI GDGCHC 1 cut(s) 138
SgeI CNNG 5 cut(s) 51, 55, 76, 154, 181
Sse9I AATT 1 cut(s) 154
SsiI CCGC 1 cut(s) 195
StyI CCWWGG 1 cut(s) 168
TasI AATT 1 cut(s) 154
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 68
TspRI CASTG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.