Rroxscaffold_6G00416010

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014239
Physical Location & Seq
Reverse (-)
38106015 .. 38112905
6891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416010.1

Sequence Viewer

Length: 1974 bp
ATGTCGTCGGGTGGCCTTAACAACTCGACCGGTAATACCCCGACCACCGCCTCGGCCGCCATCGCGCTGCCCACTACGACCAGACGACGCGTCGCCGATGGCGTCATCGACGCCTCCGCCGTCACCTTGGCCTCACCGGCCAACATCATCAACGTAGGCAAGATTAACCCGGACGCGGTTGTTTCCTCGGCGGACGAGGACGAGGAGAGCGACCCGACCTGCTGCAACGGCTCTTTGTCCGGCGCCGGGTCCCACCTCCACAGCAACCATTATTCTCCCGTGATCAAGTATCTATTGCTTCGCAGGAGAGTGTTCTTTTGTGTTCCCGAGGCGTGGCTGTTGTCGGTCCGGTCGGGGAGGAACCTCGGCAGGAAGATCTTCGGGGCGCTAATGTTGATGGCGGTTGTTTCTGTGTTCTTCGCGTTTCTGGGCGGACACGTGGAGGTTGGTGATAGGGTGAACAGGACGGAGGGGAGGCTTTTGATTCTGAAGACGTTACAAGATGATGGGACGGTGGCGCAACACGCCGTCACTGAGAACCAGGCGGCCAGGCCCAAACGTGTTTTTGAGAGAATGTCGTTATCGGAATCGGAATCGGAAGCGGAACCGGAATCCTCCATGCCCAAACGTCTTTTGGACCAACAGAATACGATTCCAGAAATATGGATGAAACCAAATAGTGACGATTTTAATAAATGCATAGCTCGACCCAGAAATCGGATAAGAACAGGATCGAAAACAAATGGCTATCTCCTTGTTCATGCCAATGGTGGATTGAATCAAATGAGAACAGGGATATGTGATATGGTAGCCGTTGCAAAGATAATGAATGCTACTCTGGTGCTTCCTTATCTAGATCACGAGTCTTTTTGGACTGATCCAAGTGGTTTTAAAGATATATTTGACTGGAGACACTTCATAGACGTGTTAACAGATGATATTGAGATAATCGAGTATTTGCCAACCCGTTATGCAGCTCAAAAGCCCCTTCTGAAGGCTCCCATCTCCTGGTCTAAGGCTAGTTATTACAGAAAAGAAATGATACCATTGTTGAAAAAGCATAAGGTTGTAAAGTTTACCCACACTGATTCGCGTCTTGCTAATAATGGACTTGCAAGTTCCATCCAAAGGTTGAGGTGCCGTGCCAATTATGAGGGTCTTCGATATACAAAGGAGATTGAGGATCTTGGCAAAGTTTTGGTCAATAGATTAAGGAAGAATGGCAATCCATATATTGCTCTTCATTTAAGATATGAGAAAGACATGCTTGCTTTCACTGGCTGCAGCCACAACCTTACTGCAAAGGAAGATGAGGAACTTCGAGATATGAGATACAGTGTTAAACATTGGAAGGAGAAAGAGATAGATAGTGAAGAGCGACGACTCCAAGGTGGATGCCCATTTTCCCCCAGAGAGGCAGCCCTGTTCCTCAAGGCCATGGGATACCCTTCGACAACAACAATCTACATTGTTGCTGGGGAGATATATGGCAGCAATAGCATGGCTGCATTTCGCTCTGAGTATCCTAATGTCTTCTCTCATAACACTCTTGCAACAGAAGAAGAGTTGAGGCCCTTCAAGCCATATCAAAATCGCCTTGCTGCCTTGGATTACATAGTAGCATTAGAGACTGATGTCTTTGTATATACATACGATGGAAACATGGCTAAGGCAGTACAGGGACATAGAAGATATGAAGGATTTCGGAAGACTATTAACCCTGACAGACAAAATTTTGTGAAACTGGTTGACCTATTGGATAAGGGTGATTTATCATGGGAAGAATTTTCTTCAGCGGTTACAACTCTGCATTCTGATCGGCTGGGAGCACCATATGTTCGACAGATAGGAGAGTCACCCAGGTTGGAGGAGAATTTTTATGCAAATCCTTTCCCTGGTTGTATCTGTAACAACTCCCAGGAGCACATTGCTCGCCTGAAATCCAATGAGAGAAGGAGCACAAGTGTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

657

Amino Acids

73.94

Weight (kDa)

8.6

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 250 - 566 1.6e-105 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37980 AT5G01100
fragaria_vesca FvH4_6g12260
malus_domestica MD04G1144500.v1.1 MD12G1158500.v1.1
prunus_persica Prupe.6G268900_v2.0.a1
pyrus_communis pycom05g13890 pycom12g15050
rosa_chinensis RchiOBHm_Chr3g0464061
rosa_laevigata RLG00000024725
rosa_multiflora Rmu_sc0006492.1_g000019
rosa_roxburghii Rroxscaffold_6G00416010
rosa_rugosa Rorug03G0070500
rosa_samantha Rh3BG131600 Rh3CG133900 Rh3DG132900
rosa_wichuraiana Rw3G010760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 227
AccB1I GGYRCC 2 cut(s) 242, 1137
AccB7I CCANNNNNTGG 1 cut(s) 1008
AccII CGCG 5 cut(s) 65, 90, 176, 422, 1093
AclWI GGATC 3 cut(s) 739, 872, 1191
AcoI YGGCCR 3 cut(s) 54, 138, 546
AcsI RAATTY 3 cut(s) 1732, 1784, 1873
AcuI CTGAAG 3 cut(s) 509, 1013, 1776
AcvI CACGTG 1 cut(s) 439
AcyI GRCGYC 3 cut(s) 102, 111, 243
AfaI GTAC 1 cut(s) 1677
AfiI CCNNNNNNNGG 9 cut(s) 175, 246, 333, 717, 994, 1008, 1128, 1414, 1895
AflIII ACRYGT 4 cut(s) 88, 436, 559, 924
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 778, 1054, 1579
AhdI GACNNNNNGTC 1 cut(s) 89
AjiI CACGTC 1 cut(s) 925
AjnI CCWGG 6 cut(s) 540, 548, 1007, 1859, 1894, 1917
AluBI AGCT 2 cut(s) 704, 977
AluI AGCT 2 cut(s) 704, 977
Alw21I GWGCWC 3 cut(s) 1831, 1926, 1961
Alw26I GTCTC 2 cut(s) 904, 1622
AlwI GGATC 3 cut(s) 739, 872, 1191
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 8 cut(s) 13, 54, 129, 138, 546, 551, 1434, 1571
ApeKI GCWGC 9 cut(s) 67, 222, 974, 1281, 1284, 1418, 1491, 1505, 1601
ApoI RAATTY 3 cut(s) 1732, 1784, 1873
ArsI GACNNNNNNTTYG 2 cut(s) 1185, 1217
AsiGI ACCGGT 1 cut(s) 29
Asp700I GAANNNNTTC 2 cut(s) 377, 1701
AspLEI GCGC 4 cut(s) 67, 245, 388, 520
AspS9I GGNCC 5 cut(s) 249, 346, 552, 637, 1572
AsuC2I CCSGG 2 cut(s) 170, 247
AsuHPI GGTGA 6 cut(s) 115, 126, 461, 469, 1778, 1848
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 3 cut(s) 249, 346, 637
BaeI ACNNNNGTAYC 2 cut(s) 1034, 1067
BanI GGYRCC 2 cut(s) 242, 1137
BauI CACGAG 1 cut(s) 860
BbrPI CACGTG 1 cut(s) 439
BbsI GAAGAC 4 cut(s) 497, 1151, 1525, 1715
Bbv12I GWGCWC 3 cut(s) 1831, 1926, 1961
BbvI GCAGC 9 cut(s) 54, 209, 986, 1268, 1296, 1430, 1492, 1503, 1588
BccI CCATC 7 cut(s) 68, 92, 391, 500, 1010, 1130, 1649
BceAI ACGGC 5 cut(s) 104, 244, 512, 797, 1125
BcgI CGANNNNNNTGC 4 cut(s) 1799, 1833, 1913, 1947
BciT130I CCWGG 6 cut(s) 542, 550, 1009, 1861, 1896, 1919
BciVI GTATCC 2 cut(s) 1436, 1533
BclI TGATCA 1 cut(s) 282
BcnI CCSGG 2 cut(s) 170, 247
BcoDI GTCTC 2 cut(s) 904, 1622
BfaI CTAG 2 cut(s) 854, 1020
BfmI CTRYAG 1 cut(s) 1282
BfoI RGCGCY 2 cut(s) 246, 389
BfuAI ACCTGC 1 cut(s) 227
BfuI GTATCC 2 cut(s) 1436, 1533
BglI GCCNNNNNGGC 1 cut(s) 137
BglII AGATCT 1 cut(s) 375
Bme1390I CCNGG 8 cut(s) 170, 247, 542, 550, 1009, 1861, 1896, 1919
Bme18I GGWCC 3 cut(s) 249, 346, 637
BmeRI GACNNNNNGTC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 925
BmgT120I GGNCC 5 cut(s) 249, 346, 552, 637, 1572
BmiI GGNNCC 7 cut(s) 244, 250, 251, 362, 606, 999, 1139
BmrFI CCNGG 8 cut(s) 170, 247, 542, 550, 1009, 1861, 1896, 1919
BmsI GCATC 1 cut(s) 1385
BoxI GACNNNNGTC 1 cut(s) 1634
BpiI GAAGAC 4 cut(s) 497, 1151, 1525, 1715
BpmI CTGGAG 1 cut(s) 928
Bpu10I CCTNAGC 1 cut(s) 1668
BpuEI CTTGAG 1 cut(s) 1415
BpuMI CCSGG 2 cut(s) 170, 247
BsaAI YACGTR 1 cut(s) 439
BsaHI GRCGYC 3 cut(s) 102, 111, 243
BsaWI WCCGGW 3 cut(s) 29, 348, 607
BsaXI ACNNNNNCTCC 1 cut(s) 1948
Bsc4I CCNNNNNNNGG 9 cut(s) 175, 246, 333, 717, 994, 1008, 1128, 1414, 1895
Bse118I RCCGGY 2 cut(s) 29, 136
Bse1I ACTGG 3 cut(s) 911, 1282, 1749
Bse3DI GCAATG 1 cut(s) 1926
BseBI CCWGG 6 cut(s) 542, 550, 1009, 1861, 1896, 1919
BseGI GGATG 3 cut(s) 672, 1122, 1400
BseLI CCNNNNNNNGG 9 cut(s) 175, 246, 333, 717, 994, 1008, 1128, 1414, 1895
BseMI GCAATG 1 cut(s) 1926
BseMII CTCAG 2 cut(s) 525, 1509
BseNI ACTGG 3 cut(s) 911, 1282, 1749
BseRI GAGGAG 2 cut(s) 218, 1883
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 9 cut(s) 54, 209, 986, 1268, 1296, 1430, 1492, 1503, 1588
BseYI CCCAGC 2 cut(s) 1475, 1822
Bsh1236I CGCG 5 cut(s) 65, 90, 176, 422, 1093
Bsh1285I CGRYCG 3 cut(s) 30, 57, 353
BshFI GGCC 8 cut(s) 15, 56, 131, 140, 548, 553, 1436, 1573
BshNI GGYRCC 2 cut(s) 242, 1137
BshTI ACCGGT 1 cut(s) 29
BsiEI CGRYCG 3 cut(s) 30, 57, 353
BsiHKAI GWGCWC 3 cut(s) 1831, 1926, 1961
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 7 cut(s) 30, 137, 170, 240, 246, 349, 608
BslFI GGGAC 3 cut(s) 235, 523, 1695
BslI CCNNNNNNNGG 9 cut(s) 175, 246, 333, 717, 994, 1008, 1128, 1414, 1895
BsmAI GTCTC 2 cut(s) 904, 1622
BsmFI GGGAC 3 cut(s) 235, 523, 1695
BsmI GAATGC 2 cut(s) 835, 1810
BsnI GGCC 8 cut(s) 15, 56, 131, 140, 548, 553, 1436, 1573
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 1831, 1926, 1961
Bsp143I GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
Bsp19I CCATGG 1 cut(s) 1437
BspANI GGCC 8 cut(s) 15, 56, 131, 140, 548, 553, 1436, 1573
BspCNI CTCAG 2 cut(s) 526, 1510
BspFNI CGCG 5 cut(s) 65, 90, 176, 422, 1093
BspLI GGNNCC 7 cut(s) 244, 250, 251, 362, 606, 999, 1139
BspMAI CTGCAG 1 cut(s) 1286
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 3 cut(s) 739, 872, 1191
BspQI GCTCTTC 2 cut(s) 1245, 1368
BspT107I GGYRCC 2 cut(s) 242, 1137
BsrDI GCAATG 1 cut(s) 1926
BsrFI RCCGGY 2 cut(s) 29, 136
BsrI ACTGG 3 cut(s) 911, 1282, 1749
BssAI RCCGGY 2 cut(s) 29, 136
BssMI GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
BssNI GRCGYC 3 cut(s) 102, 111, 243
BssSI CACGAG 1 cut(s) 860
BssT1I CCWWGG 4 cut(s) 126, 1387, 1437, 1605
Bst2BI CACGAG 1 cut(s) 860
Bst2UI CCWGG 6 cut(s) 542, 550, 1009, 1861, 1896, 1919
Bst4CI ACNGT 2 cut(s) 514, 1337
Bst6I CTCTTC 3 cut(s) 1245, 1368, 1557
BstACI GRCGYC 3 cut(s) 102, 111, 243
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 1269, 1933
BstDEI CTNAG 4 cut(s) 534, 1014, 1518, 1668
BstDSI CCRYGG 1 cut(s) 1437
BstENI CCTNNNNNAGG 1 cut(s) 992
BstF5I GGATG 3 cut(s) 672, 1122, 1400
BstFNI CGCG 5 cut(s) 65, 90, 176, 422, 1093
BstH2I RGCGCY 2 cut(s) 246, 389
BstHHI GCGC 4 cut(s) 67, 245, 388, 520
BstKTI GATC 7 cut(s) 285, 378, 734, 859, 880, 1186, 1819
BstMAI GTCTC 2 cut(s) 904, 1622
BstMBI GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
BstMCI CGRYCG 3 cut(s) 30, 57, 353
BstMWI GCNNNNNNNGC 7 cut(s) 56, 62, 137, 228, 524, 1497, 1579
BstNI CCWGG 6 cut(s) 542, 550, 1009, 1861, 1896, 1919
BstNSI RCATGY 1 cut(s) 1267
BstPAI GACNNNNGTC 1 cut(s) 1634
BstSCI CCNGG 8 cut(s) 168, 245, 540, 548, 1007, 1859, 1894, 1917
BstSFI CTRYAG 1 cut(s) 1282
BstUI CGCG 5 cut(s) 65, 90, 176, 422, 1093
BstV1I GCAGC 9 cut(s) 54, 209, 986, 1268, 1296, 1430, 1492, 1503, 1588
BstV2I GAAGAC 4 cut(s) 497, 1151, 1525, 1715
BstX2I RGATCY 2 cut(s) 375, 1183
BstXI CCANNNNNNTGG 1 cut(s) 663
BstYI RGATCY 2 cut(s) 375, 1183
BstZI CGGCCG 1 cut(s) 54
BsuI GTATCC 2 cut(s) 1436, 1533
BsuRI GGCC 8 cut(s) 15, 56, 131, 140, 548, 553, 1436, 1573
BtgI CCRYGG 1 cut(s) 1437
BtgZI GCGATG 1 cut(s) 46
BtrI CACGTC 1 cut(s) 925
BtsCI GGATG 3 cut(s) 672, 1122, 1400
BtsIMutI CAGTG 4 cut(s) 531, 1083, 1275, 1342
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 1269, 1933
CfoI GCGC 4 cut(s) 67, 245, 388, 520
Cfr10I RCCGGY 2 cut(s) 29, 136
Cfr13I GGNCC 5 cut(s) 249, 346, 552, 637, 1572
CpoI CGGWCCG 1 cut(s) 346
CseI GACGC 6 cut(s) 79, 91, 96, 119, 182, 1082
Csp6I GTAC 1 cut(s) 1676
CspAI ACCGGT 1 cut(s) 29
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 7 cut(s) 619, 761, 1264, 1438, 1501, 1663, 1776
CviQI GTAC 1 cut(s) 1676
DdeI CTNAG 4 cut(s) 534, 1014, 1518, 1668
DinI GGCGCC 1 cut(s) 244
DpnI GATC 7 cut(s) 284, 377, 733, 858, 879, 1185, 1818
DpnII GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
DraI TTTAAA 1 cut(s) 892
DriI GACNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 3 cut(s) 54, 138, 546
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 3 cut(s) 1245, 1368, 1557
Eam1105I GACNNNNNGTC 1 cut(s) 89
EarI CTCTTC 3 cut(s) 1245, 1368, 1557
EciI GGCGGA 3 cut(s) 106, 206, 447
EclXI CGGCCG 1 cut(s) 54
Eco130I CCWWGG 4 cut(s) 126, 1387, 1437, 1605
Eco47I GGWCC 3 cut(s) 249, 346, 637
Eco52I CGGCCG 1 cut(s) 54
Eco57I CTGAAG 3 cut(s) 509, 1013, 1776
Eco72I CACGTG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 992
EcoO109I RGGNCCY 2 cut(s) 249, 1572
EcoRII CCWGG 6 cut(s) 540, 548, 1007, 1859, 1894, 1917
EcoT14I CCWWGG 4 cut(s) 126, 1387, 1437, 1605
EcoT22I ATGCAT 1 cut(s) 701
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 4 cut(s) 126, 1387, 1437, 1605
FaeI CATG 7 cut(s) 622, 764, 1267, 1441, 1504, 1666, 1779
FalI AAGNNNNNCTT 2 cut(s) 1251, 1283
FaqI GGGAC 3 cut(s) 235, 523, 1695
FatI CATG 7 cut(s) 618, 760, 1263, 1437, 1500, 1662, 1775
FauNDI CATATG 1 cut(s) 1834
FbaI TGATCA 1 cut(s) 282
FokI GGATG 3 cut(s) 679, 1109, 1407
FspBI CTAG 2 cut(s) 854, 1020
GlaI GCGC 4 cut(s) 66, 244, 387, 519
GsaI CCCAGC 2 cut(s) 1479, 1826
GsuI CTGGAG 1 cut(s) 928
HaeII RGCGCY 2 cut(s) 246, 389
HaeIII GGCC 8 cut(s) 15, 56, 131, 140, 548, 553, 1436, 1573
HapII CCGG 7 cut(s) 30, 137, 170, 240, 246, 349, 608
HgaI GACGC 6 cut(s) 79, 91, 96, 119, 182, 1082
HhaI GCGC 4 cut(s) 67, 245, 388, 520
Hin1I GRCGYC 3 cut(s) 102, 111, 243
Hin1II CATG 7 cut(s) 622, 764, 1267, 1441, 1504, 1666, 1779
Hin6I GCGC 4 cut(s) 65, 243, 386, 518
HinP1I GCGC 4 cut(s) 65, 243, 386, 518
HincII GTYRAC 2 cut(s) 930, 1750
HindII GTYRAC 2 cut(s) 930, 1750
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 7 cut(s) 30, 137, 170, 240, 246, 349, 608
HphI GGTGA 6 cut(s) 115, 126, 461, 469, 1778, 1848
Hpy166II GTNNAC 4 cut(s) 460, 930, 1077, 1750
Hpy188I TCNGA 9 cut(s) 489, 586, 592, 598, 720, 993, 1519, 1707, 1816
Hpy188III TCNNGA 5 cut(s) 326, 656, 854, 860, 1322
Hpy8I GTNNAC 4 cut(s) 460, 930, 1077, 1750
Hpy99I CGWCG 5 cut(s) 10, 90, 95, 113, 1383
HpyAV CCTTC 7 cut(s) 988, 998, 1345, 1458, 1585, 1691, 1947
HpyCH4III ACNGT 2 cut(s) 514, 1337
HpyCH4IV ACGT 6 cut(s) 153, 438, 494, 559, 628, 924
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 62, 137, 228, 524, 1497, 1579
HpyF3I CTNAG 4 cut(s) 534, 1014, 1518, 1668
HpySE526I ACGT 6 cut(s) 153, 438, 494, 559, 628, 924
Hsp92I GRCGYC 3 cut(s) 102, 111, 243
Hsp92II CATG 7 cut(s) 622, 764, 1267, 1441, 1504, 1666, 1779
HspAI GCGC 4 cut(s) 65, 243, 386, 518
KasI GGCGCC 1 cut(s) 242
KflI GGGWCCC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 282
KspAI GTTAAC 1 cut(s) 930
Kzo9I GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
LguI GCTCTTC 2 cut(s) 1245, 1368
LmnI GCTCC 4 cut(s) 1003, 1826, 1921, 1956
Lsp1109I GCAGC 9 cut(s) 54, 209, 986, 1268, 1296, 1430, 1492, 1503, 1588
LweI GCATC 1 cut(s) 1385
MaeI CTAG 2 cut(s) 854, 1020
MaeII ACGT 6 cut(s) 153, 438, 494, 559, 628, 924
MaeIII GTNAC 7 cut(s) 121, 495, 529, 680, 1798, 1854, 1907
MalI GATC 7 cut(s) 284, 377, 733, 858, 879, 1185, 1818
MboI GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
MflI RGATCY 2 cut(s) 375, 1183
MhlI GDGCHC 3 cut(s) 1831, 1926, 1961
MluCI AATT 4 cut(s) 1147, 1732, 1784, 1873
MluI ACGCGT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 3 cut(s) 872, 1377, 1862
MmeI TCCRAC 1 cut(s) 1845
Mph1103I ATGCAT 1 cut(s) 701
MroXI GAANNNNTTC 2 cut(s) 377, 1701
MseI TTAA 9 cut(s) 18, 165, 690, 891, 929, 1211, 1247, 1341, 1716
MslI CAYNNNNRTG 2 cut(s) 765, 923
MspA1I CMGCKG 1 cut(s) 1796
MspI CCGG 7 cut(s) 30, 137, 170, 240, 246, 349, 608
MspR9I CCNGG 8 cut(s) 170, 247, 542, 550, 1009, 1861, 1896, 1919
Mva1269I GAATGC 2 cut(s) 835, 1810
MvaI CCWGG 6 cut(s) 542, 550, 1009, 1861, 1896, 1919
MvnI CGCG 5 cut(s) 65, 90, 176, 422, 1093
MwoI GCNNNNNNNGC 7 cut(s) 56, 62, 137, 228, 524, 1497, 1579
NarI GGCGCC 1 cut(s) 243
NciI CCSGG 2 cut(s) 170, 247
NcoI CCATGG 1 cut(s) 1437
NdeI CATATG 1 cut(s) 1834
NdeII GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
NlaIII CATG 7 cut(s) 622, 764, 1267, 1441, 1504, 1666, 1779
NlaIV GGNNCC 7 cut(s) 244, 250, 251, 362, 606, 999, 1139
NmeAIII GCCGAG 3 cut(s) 32, 167, 345
NmuCI GTSAC 4 cut(s) 121, 529, 680, 1854
NsiI ATGCAT 1 cut(s) 701
NspI RCATGY 1 cut(s) 1267
PciSI GCTCTTC 2 cut(s) 1245, 1368
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 117, 207
PctI GAATGC 2 cut(s) 835, 1810
PdmI GAANNNNTTC 2 cut(s) 377, 1701
PfeI GAWTC 7 cut(s) 484, 587, 593, 611, 652, 778, 1088
PflMI CCANNNNNTGG 1 cut(s) 1008
PinAI ACCGGT 1 cut(s) 29
PleI GAGTC 3 cut(s) 871, 1377, 1861
PluTI GGCGCC 1 cut(s) 246
PmaCI CACGTG 1 cut(s) 439
PmlI CACGTG 1 cut(s) 439
PpsI GAGTC 3 cut(s) 871, 1377, 1861
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 249
PshAI GACNNNNGTC 1 cut(s) 1634
Psp5II RGGWCCY 1 cut(s) 249
Psp6I CCWGG 6 cut(s) 540, 548, 1007, 1859, 1894, 1917
PspCI CACGTG 1 cut(s) 439
PspFI CCCAGC 2 cut(s) 1475, 1822
PspGI CCWGG 6 cut(s) 540, 548, 1007, 1859, 1894, 1917
PspN4I GGNNCC 7 cut(s) 244, 250, 251, 362, 606, 999, 1139
PspPI GGNCC 5 cut(s) 249, 346, 552, 637, 1572
PspPPI RGGWCCY 1 cut(s) 249
PstI CTGCAG 1 cut(s) 1286
PsuI RGATCY 2 cut(s) 375, 1183
RsaI GTAC 1 cut(s) 1677
RsaNI GTAC 1 cut(s) 1676
RseI CAYNNNNRTG 2 cut(s) 765, 923
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SapI GCTCTTC 2 cut(s) 1245, 1368
SaqAI TTAA 9 cut(s) 18, 165, 690, 891, 929, 1211, 1247, 1341, 1716
Sau3AI GATC 7 cut(s) 282, 375, 731, 856, 877, 1183, 1816
Sau96I GGNCC 5 cut(s) 249, 346, 552, 637, 1572
SchI GAGTC 3 cut(s) 872, 1377, 1862
ScrFI CCNGG 8 cut(s) 170, 247, 542, 550, 1009, 1861, 1896, 1919
SduI GDGCHC 3 cut(s) 1831, 1926, 1961
SfaNI GCATC 1 cut(s) 1385
SfcI CTRYAG 1 cut(s) 1282
SfiI GGCCNNNNNGGCC 1 cut(s) 137
SfoI GGCGCC 1 cut(s) 244
SinI GGWCC 3 cut(s) 249, 346, 637
SmiMI CAYNNNNRTG 2 cut(s) 765, 923
SmlI CTYRAG 1 cut(s) 1430
SmoI CTYRAG 1 cut(s) 1430
Sse9I AATT 4 cut(s) 1147, 1732, 1784, 1873
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 2 cut(s) 854, 1020
StyD4I CCNGG 8 cut(s) 168, 245, 540, 548, 1007, 1859, 1894, 1917
StyI CCWWGG 4 cut(s) 126, 1387, 1437, 1605
TaaI ACNGT 2 cut(s) 514, 1337
TaiI ACGT 6 cut(s) 156, 441, 497, 562, 631, 927
TaqI TCGA 9 cut(s) 26, 108, 706, 734, 951, 1162, 1321, 1451, 1840
TaqII GACCGA 1 cut(s) 334
TasI AATT 4 cut(s) 1147, 1732, 1784, 1873
TatI WGTACW 1 cut(s) 1675
TauI GCSGC 2 cut(s) 59, 548
TfiI GAWTC 7 cut(s) 484, 587, 593, 611, 652, 778, 1088
Tru1I TTAA 9 cut(s) 18, 165, 690, 891, 929, 1211, 1247, 1341, 1716
Tru9I TTAA 9 cut(s) 18, 165, 690, 891, 929, 1211, 1247, 1341, 1716
TscAI CASTG 4 cut(s) 538, 1090, 1282, 1342
TseFI GTSAC 4 cut(s) 121, 529, 680, 1854
TseI GCWGC 9 cut(s) 67, 222, 974, 1281, 1284, 1418, 1491, 1505, 1601
Tsp45I GTSAC 4 cut(s) 121, 529, 680, 1854
TspDTI ATGAA 7 cut(s) 683, 749, 842, 907, 1232, 1710, 1959
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 4 cut(s) 538, 1090, 1282, 1342
Van91I CCANNNNNTGG 1 cut(s) 1008
VpaK11BI GGWCC 3 cut(s) 249, 346, 637
XagI CCTNNNNNAGG 1 cut(s) 992
XapI RAATTY 3 cut(s) 1732, 1784, 1873
XbaI TCTAGA 1 cut(s) 853
XceI RCATGY 1 cut(s) 1267
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmnI GAANNNNTTC 2 cut(s) 377, 1701
XspI CTAG 2 cut(s) 854, 1020
Zsp2I ATGCAT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.