Rorug03G0070500

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014239
Physical Location & Seq
Forward (+)
5582390 .. 5585124
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0070500.1

Sequence Viewer

Length: 441 bp
ATGGGTTTCAATCTAGACATCGATCGAAATACCGGAGTTGAAACTAGGGTTCCATTTGTGGGTTCTTCGATTTGGGGATTTGGGGGTTTCTCGGCGATTCTTGAGAATCTGCAGCAGACCATCTTCTCCAACCATTCCAAGGCCTCTGCATCACTATTTTCAACAATTGGAAATAGGTTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGCTGGGTTGGAGTTCTATCCTTTAGGTGGAGATCCAAAAGTTCTTGCCGAATGGCACTCTCATGTTGCTGAGGCACTAAAAATACCGATTCATAGATTTTTCACAATGCCACGGACGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGCAACATATTGGATATAGACTATCATATCAAATAGTCGATGCATTAATTTGGCTAGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

146

Amino Acids

16.39

Weight (kDa)

9.16

Isoelectric Point (pI)

25.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014239)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37980 AT5G01100
fragaria_vesca FvH4_6g12260
malus_domestica MD04G1144500.v1.1 MD12G1158500.v1.1
prunus_persica Prupe.6G268900_v2.0.a1
pyrus_communis pycom05g13890 pycom12g15050
rosa_chinensis RchiOBHm_Chr3g0464061
rosa_laevigata RLG00000024725
rosa_multiflora Rmu_sc0006492.1_g000019
rosa_roxburghii Rroxscaffold_6G00416010
rosa_rugosa Rorug03G0070500
rosa_samantha Rh3BG131600 Rh3CG133900 Rh3DG132900
rosa_wichuraiana Rw3G010760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 3 cut(s) 199, 350, 435
AcyI GRCGYC 1 cut(s) 338
AfiI CCNNNNNNNGG 3 cut(s) 59, 139, 248
AgsI TTSAA 4 cut(s) 10, 41, 162, 205
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 3 cut(s) 199, 350, 435
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AseI ATTAAT 1 cut(s) 422
AsuNHI GCTAGC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 128
BfaI CTAG 4 cut(s) 14, 45, 185, 431
BfmI CTRYAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 158, 406
BmtI GCTAGC 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 138, 332
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 139, 248
Bse1I ACTGG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 138, 332
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 3 cut(s) 59, 139, 248
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 3 cut(s) 59, 139, 248
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 22, 253
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 283
BspDI ATCGAT 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 138, 332
BssMI GATC 2 cut(s) 22, 253
BssNI GRCGYC 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 2 cut(s) 25, 256
BstMBI GATC 2 cut(s) 22, 253
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 194, 337
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 1 cut(s) 346
CviAII CATG 2 cut(s) 194, 284
CviJI RGCY 3 cut(s) 143, 184, 430
CviKI_1 RGCY 3 cut(s) 143, 184, 430
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 24, 255
DpnII GATC 2 cut(s) 22, 253
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 197, 287
FaiI YATR 6 cut(s) 195, 285, 315, 384, 393, 403
FatI CATG 2 cut(s) 193, 283
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 4 cut(s) 14, 45, 185, 431
GluI GCNGC 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 2 cut(s) 197, 287
HinfI GANTC 3 cut(s) 97, 106, 310
HpaII CCGG 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 14, 101
HpyCH4V TGCA 4 cut(s) 112, 149, 197, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 337
HpyF3I CTNAG 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 2 cut(s) 197, 287
Kzo9I GATC 2 cut(s) 22, 253
LpnPI CCDG 3 cut(s) 46, 210, 358
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 158, 406
MaeI CTAG 4 cut(s) 14, 45, 185, 431
MalI GATC 2 cut(s) 24, 255
MboI GATC 2 cut(s) 22, 253
MboII GAAGA 2 cut(s) 57, 115
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 253
MluCI AATT 5 cut(s) 165, 199, 350, 423, 435
MmeI TCCRAC 2 cut(s) 153, 210
MnlI CCTC 4 cut(s) 154, 286, 366, 372
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 194, 337
NdeII GATC 2 cut(s) 22, 253
NheI GCTAGC 1 cut(s) 184
NlaIII CATG 2 cut(s) 197, 287
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 421
PceI AGGCCT 1 cut(s) 143
PfeI GAWTC 3 cut(s) 97, 106, 310
PkrI GCNGC 1 cut(s) 114
Ple19I CGATCG 1 cut(s) 25
PshBI ATTAAT 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 51
PstI CTGCAG 1 cut(s) 114
PsuI RGATCY 1 cut(s) 253
PvuI CGATCG 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 2 cut(s) 22, 253
SetI ASST 2 cut(s) 179, 250
SfaNI GCATC 2 cut(s) 158, 406
SfcI CTRYAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 5 cut(s) 165, 199, 350, 423, 435
SseBI AGGCCT 1 cut(s) 143
SspMI CTAG 4 cut(s) 14, 45, 185, 431
StuI AGGCCT 1 cut(s) 143
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 4 cut(s) 21, 25, 68, 414
TasI AATT 5 cut(s) 165, 199, 350, 423, 435
TfiI GAWTC 3 cut(s) 97, 106, 310
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 1 cut(s) 352
TseI GCWGC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 1 cut(s) 352
VspI ATTAAT 1 cut(s) 422
XapI RAATTY 3 cut(s) 199, 350, 435
XbaI TCTAGA 1 cut(s) 13
XspI CTAG 4 cut(s) 14, 45, 185, 431
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.