Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006915

Physical Location & Seq

Genomic Coordinates Forward (+)

20567788 .. 20568491

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGCCGAATCCAAGAGTGAGCGCAGCCTTTAAAGCAATGGCAGAGCTTGGTATTAATGAAAAACAGGTCAAACCAGTGTTGAAAAATCTCTTAAGATTATTTGACAGAAACTGGGAGCTGATTGAAGAAGAAAATTATAGAGTTCTTCTAGATGCTATATTTGACGCGGAGGATACTCAGGGGGTGGAAGAGAAGGAGGAGAAGAAGAAAAGCAAGAACTATGATGTATGTAATTTGAATTACGTTGGTTCTGTCGCTCCATTTCTTGTTTTTCTCAACCTTGTGGCTATAGTTTCTGACATATCTGTTGCTGCATTTCCTGACATATTATGTCCTGTTACCTATCAGGAGGAAGATATGGAAGAAGAGCCTCAGCTGCGTCGTGAACCTGCTCGTCCCTTGAAAAGAATACATTCAAGTGGTGATGAGGGTTCATCACAGAAGAAGAAATCTACAAATGCTGATAGGATAATATGGGGGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032259 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0080188 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

164

Amino Acids

18.58

Weight (kDa)

5.21

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	6 - 59	2.6e-24	Ubiquitin-binding WIYLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20650 FvH4_2g20650 FvH4_2g20650
malus_domestica	MD00G1060700.v1.1
prunus_persica	Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1
pyrus_communis	pycom05g17400 pycom10g15310
rosa_chinensis	RchiOBHm_Chr6g0286831
rosa_laevigata	RLG00000012533
rosa_multiflora	Rmu_ssc0000279.1_g000009
rosa_roxburghii	Rroxscaffold_7G00181890
rosa_rugosa	Rorug06G0183800 Rorug06G0183900 Rorug06G0183900 Rorug06G0183900
rosa_samantha	Rh6AG295900 Rh6BG300200 Rh6CG308100 Rh6DG291900
rosa_wichuraiana	Rw6G025510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	5
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	5 cut(s)	85, 128, 241, 406, 420
AluBI	AGCT	3 cut(s)	49, 121, 379
AluI	AGCT	3 cut(s)	49, 121, 379
AlwNI	CAGNNNCTG	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	26, 314, 379
AseI	ATTAAT	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	7, 26
AsuHPI	GGTGA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	38, 301, 366
BciVI	GTATCC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	27, 315, 380
BlsI	GCNGC	3 cut(s)	28, 316, 381
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	77, 119
Bse3DI	GCAATG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	194, 389
BseNI	ACTGG	2 cut(s)	77, 119
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	38, 301, 366
Bsh1236I	CGCG	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	384
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	193, 388
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	77, 119
BssNI	GRCGYC	1 cut(s)	5
Bst6I	CTCTTC	2 cut(s)	186, 363
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	180, 375
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 26
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 379
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	38, 301, 366
BsuI	GTATCC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	400
CaiI	CAGNNNCTG	1 cut(s)	114
CfoI	GCGC	2 cut(s)	7, 26
CseI	GACGC	2 cut(s)	176, 371
CviJI	RGCY	6 cut(s)	29, 49, 121, 290, 373, 379
CviKI_1	RGCY	6 cut(s)	29, 49, 121, 290, 373, 379
DdeI	CTNAG	2 cut(s)	180, 375
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	186, 363
EarI	CTCTTC	2 cut(s)	186, 363
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaqI	GGGAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	27, 315, 380
Fsp4HI	GCNGC	3 cut(s)	27, 315, 380
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	2 cut(s)	6, 25
GluI	GCNGC	3 cut(s)	27, 315, 380
HaeII	RGCGCY	1 cut(s)	8
HgaI	GACGC	2 cut(s)	176, 371
HhaI	GCGC	2 cut(s)	7, 26
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	2 cut(s)	5, 24
HinP1I	GCGC	2 cut(s)	5, 24
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	152, 323, 350, 386
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 379
HpyF3I	CTNAG	2 cut(s)	180, 375
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	2 cut(s)	5, 24
KasI	GGCGCC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	118, 265
LpnPI	CCDG	8 cut(s)	53, 90, 100, 167, 335, 336, 351, 405
Lsp1109I	GCAGC	3 cut(s)	38, 301, 366
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	340
MluCI	AATT	3 cut(s)	136, 235, 241
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	166, 193, 346, 384, 424
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	3 cut(s)	33, 57, 95
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	379
MspCI	CTTAAG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	35, 379
NarI	GGCGCC	1 cut(s)	5
NlaIV	GGNNCC	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	28, 316, 381
PluTI	GGCGCC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	114
PvuII	CAGCTG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	33, 57, 95
SatI	GCNGC	3 cut(s)	27, 315, 380
SetI	ASST	8 cut(s)	51, 72, 123, 249, 285, 347, 381, 394
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	291
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	136, 235, 241
SsiI	CCGC	1 cut(s)	170
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	249
TasI	AATT	3 cut(s)	136, 235, 241
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	3 cut(s)	33, 57, 95
Tru9I	TTAA	3 cut(s)	33, 57, 95
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	3 cut(s)	26, 314, 379
TspDTI	ATGAA	2 cut(s)	75, 426
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	57
XbaI	TCTAGA	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.