Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006915

Physical Location & Seq

Genomic Coordinates Reverse (-)

20918636 .. 20924961

Gene Structure 6326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2550 bp

ATGGCGCCACCAAGTCCACAAGTTTCGAAAGCCTTTCGTGCAATGGCAGCTATTGGTATTAGTGAACAACAGGTGAAACCAGTTTTAAAGAATCTCTTGAGGTTGTATAACAGAGATTGGTCACTGATTGAAGCAGAGGAATATAGAGCTCTCGCTGATGCTATATTTGAGGCAGAAGATGCTAAGGTTGCAGCAGAAAAGAAGAAATGCAACAATTATGATCAGGAAGATATGGAAGCAGAATCACATCCACACCATGAACCTGAACTTCCGTTGACGAGGTTACGTTCAAGAAGTCAGGATGAGAGTCCATCACAGAAGAAGAAATCTTTAGATGATGAACCGGTGGACAATATAGGGGAAGATTTCTCTGTTCCTCATCGTCCCTTGAAAAGGTTACGCCTACAAAATCATGAGTGTCAGGTGTCACCTTCCTCAAATACCTGCAATCCTATGTCTGGTGGTAGTTTGGTCATAAAGCCAAAAGTGGAAGCAGAGGAACTACTCGACACTCGTTCTGCACAACAGCCCCAAAATACTTCACATTCACCTGAGTCAAGGCCACCGGTTTCTCCTCATTCTGGTAATAAAGATAAGGGCAAGCAACCTCTTATATCTAAACCTTTGGCACTGCAAGGGAAGAGTTTATCGGAAAGATCATCTAATGGCGTTCGCTTTAAAGAGACGGCGGTTGAACCAGGGATCATTCTTATGCCTAAACAGAATGTTAACAGTTTAGCATTAATCACGCCTAAAGATGAGCCTTTCACTGATGACATGGCCCAAGACGAGGTTCCTATTGCCATGATCCATCCAGATGAATCAGTTAATGTACACCGTCCTCTATTGACAGAAGGTGCGACTGGAAAGCAACATGATGAACCCGTGGCTTCCCAAGAGAGAGAAAGTAGAAATGATATTCCAGTTTTATCTAATGAGGGGAGTATGAATGATGAGCTTGCAACTATTCCAGAGGGCTCTCCTAACTTGGGGGAATCTTCTTGCTTAGAGGTTGCCTCATCACCTTCAGGAGAGGTAAAGCTTTCTCTGAGTTGCAGTTCAGCTATTGGAAGACCAGGCTTTCATATGCCTAATCTAGATGCAATTCTAAAATTTACAGAGGAAAAATGTCTGCACACATACAAAATCATTGACCCTAAGTTCTCTTTGAAAAATCTGTTGGGACATATGTGTGAGAGCTTCTTGGAATTGGCAACTAATTCTAATGATGAATCACAGGATGGATCAATTAAAGTAGCACCAAATCTTGATTCATTGCAAAGATCTCCTGCTTGGGATGCTGTGGGTGGAAATAAGGAAACACTTTCCATGCAGTCATGTGCTTTGAACGGGCCTGTTATTATGGATTGCCCCAGTCCAGTTACTGATCCTGAAGTGCCAAGAATTCCCTTCACTTTGAATGGTAATTGTGCACAAGTCTCTAGTACTGTTGTTTCTAATGGTTTTTCTGAGGATAATGTGGATGAGTCCCTGAGTCTGGTGGTTGTTCAAAACTCTGATCTAACTCCTGATGATCTAAGGACTATTCACGATATAAATGATATAGCTAGAGGAGAAGAAAGAGTCAAAATATCGTGGGTAAATGAAAGGAGCAGGGATCGTCCACCATCCTTCTTCTATATCTCCAAAAACCTTGTCTTCAAAGATGCTGATCTTAAAATATGTCTCTCTAGCATTGAGGAAAAGAATTGCTGTGCAACTTGCTTTGGTGATTGTGTATCAGCGTCTATACCTTGTGCATGTGCATATCAAACTGGGGGTAAGTTTGCTTACACACCAGAAGGCCTCATTAAAGATGATCTATTGGAAGAGTGTATCTCTATGACTCGTAATCCGCAACCACACCATCTCTTCTACTGTAAGAACTGCCCGCTTGAAAGAATAAAGAATGATGATTGTTTAGAGCCATGCAAAGGCCATTTAAGGAGGAATTTCATTAAAGAATGCTGGGTTAAATGTGGCTGCCATGGGCAATGTGGCAACAGGGTGGTCCAGAGAGGCTTGAATTGCAACTTGCAGGTCTTTTATACTTCAGAAGGAAAAGGATGGGGTCTTCGACCCTTAGATGGCCTGCCTAAAGGTGCATTTGTGTGTGAGTTTGTTGGTGAAATATTAACCAACAAAGAGCGGCACCAAAGGAAAATCCAAAGCACCAGAAGTGGGAGACGTCCTTATCCGGTATTATTCGATGCAGATTGGGGTAGTAAAGCCAATCTGAGGGATGAAGAAGCTCTCTGTTTGGATGCGACAAAATATGGAAATGTTGCTAGGTTTATTAATCACAGATGTTTGGATGCAAACTTGGTTCCGATCCCTGTCGAAGTCGAGACTCCTGATCATCGCTTTTATCATGTTGCTTTCTTCACCACAAGAAAAGTAGATGCCTTGGAAGAGCTTACATGGGATTATGGCATTGACTTTGACGACCATGATGATCCTGTTAAGGTGTTCAACTGCCAATGTGGCAGTAAATTCTGCAGGAGTATGACACGTTCAAATAGATCAAGGTCGGCCTCACTTGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032259 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0080188 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

849

Amino Acids

94.39

Weight (kDa)

5.52

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	8 - 60	2.3e-20	Ubiquitin-binding WIYLD domain
Pre-SET	PF05033	524 - 669	4e-10	Pre-SET motif
SET	PF00856	689 - 811	4.9e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20650 FvH4_2g20650 FvH4_2g20650
malus_domestica	MD00G1060700.v1.1
prunus_persica	Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1
pyrus_communis	pycom05g17400 pycom10g15310
rosa_chinensis	RchiOBHm_Chr6g0286831
rosa_laevigata	RLG00000012533
rosa_multiflora	Rmu_ssc0000279.1_g000009
rosa_roxburghii	Rroxscaffold_7G00181890
rosa_rugosa	Rorug06G0183800 Rorug06G0183900 Rorug06G0183900 Rorug06G0183900
rosa_samantha	Rh6AG295900 Rh6BG300200 Rh6CG308100 Rh6DG291900
rosa_wichuraiana	Rw6G025510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2191
Acc36I	ACCTGC	2 cut(s)	452, 2029
AccB1I	GGYRCC	2 cut(s)	4, 2151
AccBSI	CCGCTC	1 cut(s)	2149
AciI	CCGC	4 cut(s)	689, 1856, 1892, 2149
AclWI	GGATC	7 cut(s)	710, 802, 1252, 1382, 1626, 2326, 2450
AcsI	RAATTY	4 cut(s)	1112, 1404, 1951, 2492
AcuI	CTGAAG	3 cut(s)	1011, 1413, 2037
AcyI	GRCGYC	2 cut(s)	5, 2188
AfaI	GTAC	2 cut(s)	834, 1447
AflIII	ACRYGT	1 cut(s)	2510
AgeI	ACCGGT	2 cut(s)	343, 565
AjnI	CCWGG	2 cut(s)	697, 1075
AjuI	GAANNNNNNNTTGG	6 cut(s)	777, 809, 1163, 1195, 1255, 1287
AluBI	AGCT	9 cut(s)	50, 149, 958, 1042, 1064, 1200, 1568, 2252, 2416
AluI	AGCT	9 cut(s)	50, 149, 958, 1042, 1064, 1200, 1568, 2252, 2416
Alw21I	GWGCWC	2 cut(s)	151, 1435
Alw26I	GTCTC	5 cut(s)	677, 1444, 1691, 2179, 2342
Alw44I	GTGCAC	1 cut(s)	1431
AlwI	GGATC	7 cut(s)	710, 802, 1252, 1382, 1626, 2326, 2450
AlwNI	CAGNNNCTG	1 cut(s)	1385
AoxI	GGCC	7 cut(s)	560, 780, 1352, 1804, 1936, 2089, 2532
ApaLI	GTGCAC	1 cut(s)	1431
ApeKI	GCWGC	3 cut(s)	47, 191, 1983
ApoI	RAATTY	4 cut(s)	1112, 1404, 1951, 2492
ArsI	GACNNNNNNTTYG	2 cut(s)	1641, 1673
AseI	ATTAAT	2 cut(s)	743, 2298
AsiGI	ACCGGT	2 cut(s)	343, 565
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	781, 1352, 2011
AsuHPI	GGTGA	7 cut(s)	85, 420, 540, 1014, 1742, 2138, 2377
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	2011
BaeGI	GKGCMC	1 cut(s)	1435
BanI	GGYRCC	2 cut(s)	4, 2151
BanII	GRGCYC	2 cut(s)	151, 980
BbsI	GAAGAC	3 cut(s)	1078, 1651, 2066
Bbv12I	GWGCWC	2 cut(s)	151, 1435
BbvI	GCAGC	3 cut(s)	59, 203, 1970
BccI	CCATC	7 cut(s)	319, 819, 1235, 1636, 1875, 2061, 2081
BceAI	ACGGC	1 cut(s)	702
BciT130I	CCWGG	2 cut(s)	699, 1077
BclI	TGATCA	2 cut(s)	220, 2356
BcoDI	GTCTC	5 cut(s)	677, 1444, 1691, 2179, 2342
BfaI	CTAG	5 cut(s)	1097, 1443, 1569, 1692, 2289
BfmI	CTRYAG	1 cut(s)	2497
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	2 cut(s)	452, 2029
BglI	GCCNNNNNGGC	1 cut(s)	2484
BglII	AGATCT	1 cut(s)	1283
BisI	GCNGC	4 cut(s)	48, 192, 1984, 2150
BlsI	GCNGC	4 cut(s)	49, 193, 1985, 2151
BmcAI	AGTACT	1 cut(s)	1447
Bme1390I	CCNGG	2 cut(s)	699, 1077
Bme18I	GGWCC	1 cut(s)	2011
BmgT120I	GGNCC	3 cut(s)	781, 1352, 2011
BmiI	GGNNCC	4 cut(s)	6, 795, 2153, 2328
BmrFI	CCNGG	2 cut(s)	699, 1077
BmrI	ACTGGG	2 cut(s)	1368, 1785
BmsI	GCATC	9 cut(s)	148, 169, 1090, 1288, 1657, 2200, 2254, 2305, 2392
BmuI	ACTGGG	2 cut(s)	1368, 1785
BpiI	GAAGAC	3 cut(s)	1078, 1651, 2066
BplI	GAGNNNNNCTC	4 cut(s)	1001, 1033, 1823, 1855
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	1671
BsaHI	GRCGYC	2 cut(s)	5, 2188
BsaJI	CCNNGG	4 cut(s)	698, 885, 1987, 2406
BsaWI	WCCGGW	3 cut(s)	343, 565, 2197
Bse118I	RCCGGY	2 cut(s)	343, 565
Bse1I	ACTGG	6 cut(s)	80, 868, 923, 1374, 1379, 1780
Bse3DI	GCAATG	3 cut(s)	48, 1274, 2000
Bse8I	GATNNNNATC	1 cut(s)	1671
BseBI	CCWGG	2 cut(s)	699, 1077
BseDI	CCNNGG	4 cut(s)	698, 885, 1987, 2406
BseJI	GATNNNNATC	1 cut(s)	1671
BseMI	GCAATG	3 cut(s)	48, 1274, 2000
BseMII	CTCAG	5 cut(s)	543, 1040, 1461, 1484, 2228
BseNI	ACTGG	6 cut(s)	80, 868, 923, 1374, 1379, 1780
BseRI	GAGGAG	2 cut(s)	564, 1587
BseSI	GKGCMC	1 cut(s)	1435
BseXI	GCAGC	3 cut(s)	59, 203, 1970
BseYI	CCCAGC	1 cut(s)	1968
BsgI	GTGCAG	2 cut(s)	504, 1118
BshFI	GGCC	7 cut(s)	562, 782, 1354, 1806, 1938, 2091, 2534
BshNI	GGYRCC	2 cut(s)	4, 2151
BshTI	ACCGGT	2 cut(s)	343, 565
BsiHKAI	GWGCWC	2 cut(s)	151, 1435
BsiSI	CCGG	3 cut(s)	344, 566, 2198
BslFI	GGGAC	3 cut(s)	369, 1197, 1474
BsmAI	GTCTC	5 cut(s)	677, 1444, 1691, 2179, 2342
BsmBI	CGTCTC	2 cut(s)	677, 2179
BsmFI	GGGAC	3 cut(s)	369, 1197, 1474
BsmI	GAATGC	1 cut(s)	1970
BsnI	GGCC	7 cut(s)	562, 782, 1354, 1806, 1938, 2091, 2534
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	3 cut(s)	151, 980, 1435
Bsp1407I	TGTACA	1 cut(s)	832
Bsp19I	CCATGG	1 cut(s)	1987
BspACI	CCGC	4 cut(s)	689, 1856, 1892, 2149
BspANI	GGCC	7 cut(s)	562, 782, 1354, 1806, 1938, 2091, 2534
BspCNI	CTCAG	5 cut(s)	544, 1041, 1462, 1485, 2229
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	4 cut(s)	6, 795, 2153, 2328
BspMAI	CTGCAG	1 cut(s)	2501
BspMI	ACCTGC	2 cut(s)	452, 2029
BspPI	GGATC	7 cut(s)	710, 802, 1252, 1382, 1626, 2326, 2450
BspQI	GCTCTTC	1 cut(s)	2406
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	2 cut(s)	4, 2151
BsrBI	CCGCTC	1 cut(s)	2149
BsrDI	GCAATG	3 cut(s)	48, 1274, 2000
BsrFI	RCCGGY	2 cut(s)	343, 565
BsrGI	TGTACA	1 cut(s)	832
BsrI	ACTGG	6 cut(s)	80, 868, 923, 1374, 1379, 1780
BssAI	RCCGGY	2 cut(s)	343, 565
BssECI	CCNNGG	4 cut(s)	698, 885, 1987, 2406
BssNI	GRCGYC	2 cut(s)	5, 2188
BssT1I	CCWWGG	2 cut(s)	1987, 2406
Bst2UI	CCWGG	2 cut(s)	699, 1077
Bst4CI	ACNGT	4 cut(s)	734, 839, 1450, 1880
Bst6I	CTCTTC	4 cut(s)	635, 1824, 1877, 2406
BstACI	GRCGYC	2 cut(s)	5, 2188
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	832
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	4 cut(s)	602, 960, 1892, 2093
BstDSI	CCRYGG	2 cut(s)	885, 1987
BstENI	CCTNNNNNAGG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	5 cut(s)	677, 1444, 1691, 2179, 2342
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 47, 179, 188, 1298, 2028, 2484, 2540
BstNI	CCWGG	2 cut(s)	699, 1077
BstNSI	RCATGY	1 cut(s)	1764
BstSCI	CCNGG	2 cut(s)	697, 1075
BstSFI	CTRYAG	1 cut(s)	2497
BstSLI	GKGCMC	1 cut(s)	1435
BstV1I	GCAGC	3 cut(s)	59, 203, 1970
BstV2I	GAAGAC	3 cut(s)	1078, 1651, 2066
BstX2I	RGATCY	1 cut(s)	1283
BstYI	RGATCY	1 cut(s)	1283
BsuRI	GGCC	7 cut(s)	562, 782, 1354, 1806, 1938, 2091, 2534
BtgI	CCRYGG	2 cut(s)	885, 1987
BtgZI	GCGATG	1 cut(s)	2345
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	3 cut(s)	122, 629, 768
BveI	ACCTGC	2 cut(s)	452, 2029
Cac8I	GCNNGC	4 cut(s)	602, 960, 1892, 2093
CaiI	CAGNNNCTG	1 cut(s)	1385
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	343, 565
Cfr13I	GGNCC	3 cut(s)	781, 1352, 2011
CseI	GACGC	1 cut(s)	1734
Csp6I	GTAC	2 cut(s)	833, 1446
CspAI	ACCGGT	2 cut(s)	343, 565
CviQI	GTAC	2 cut(s)	833, 1446
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	2 cut(s)	87, 679
Eam1104I	CTCTTC	4 cut(s)	635, 1824, 1877, 2406
EarI	CTCTTC	4 cut(s)	635, 1824, 1877, 2406
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	1987, 2406
Eco147I	AGGCCT	1 cut(s)	1806
Eco24I	GRGCYC	2 cut(s)	151, 980
Eco47I	GGWCC	1 cut(s)	2011
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	3 cut(s)	1011, 1413, 2037
EcoICRI	GAGCTC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	1404
EcoRII	CCWGG	2 cut(s)	697, 1075
EcoT14I	CCWWGG	2 cut(s)	1987, 2406
EcoT38I	GRGCYC	2 cut(s)	151, 980
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	1987, 2406
Esp3I	CGTCTC	2 cut(s)	677, 2179
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	3 cut(s)	369, 1197, 1474
FauI	CCCGC	1 cut(s)	1899
FauNDI	CATATG	2 cut(s)	1086, 1188
FbaI	TGATCA	2 cut(s)	220, 2356
Fnu4HI	GCNGC	4 cut(s)	48, 192, 1984, 2150
FriOI	GRGCYC	2 cut(s)	151, 980
Fsp4HI	GCNGC	4 cut(s)	48, 192, 1984, 2150
FspBI	CTAG	5 cut(s)	1097, 1443, 1569, 1692, 2289
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	48, 192, 1984, 2150
GsaI	CCCAGC	1 cut(s)	1972
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	7 cut(s)	562, 782, 1354, 1806, 1938, 2091, 2534
HapII	CCGG	3 cut(s)	344, 566, 2198
HgaI	GACGC	1 cut(s)	1734
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 2188
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	276, 730
HindII	GTYRAC	2 cut(s)	276, 730
HindIII	AAGCTT	1 cut(s)	1040
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	3 cut(s)	344, 566, 2198
HphI	GGTGA	7 cut(s)	85, 420, 540, 1014, 1742, 2138, 2377
Hpy166II	GTNNAC	8 cut(s)	17, 65, 276, 349, 730, 835, 1433, 1625
Hpy188I	TCNGA	7 cut(s)	652, 1050, 1471, 1519, 2056, 2238, 2331
Hpy8I	GTNNAC	8 cut(s)	17, 65, 276, 349, 730, 835, 1433, 1625
HpyAV	CCTTC	7 cut(s)	441, 848, 1035, 1420, 1642, 1796, 2051
HpyCH4III	ACNGT	4 cut(s)	734, 839, 1450, 1880
HpyCH4IV	ACGT	3 cut(s)	286, 2188, 2512
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 47, 179, 188, 1298, 2028, 2484, 2540
HpySE526I	ACGT	3 cut(s)	286, 2188, 2512
Hsp92I	GRCGYC	2 cut(s)	5, 2188
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	2 cut(s)	220, 2356
KspAI	GTTAAC	1 cut(s)	730
LguI	GCTCTTC	1 cut(s)	2406
LmnI	GCTCC	1 cut(s)	1611
Lsp1109I	GCAGC	3 cut(s)	59, 203, 1970
LweI	GCATC	9 cut(s)	148, 169, 1090, 1288, 1657, 2200, 2254, 2305, 2392
MaeI	CTAG	5 cut(s)	1097, 1443, 1569, 1692, 2289
MaeII	ACGT	3 cut(s)	286, 2188, 2512
MaeIII	GTNAC	5 cut(s)	120, 282, 396, 426, 1381
MbiI	CCGCTC	1 cut(s)	2149
MflI	RGATCY	1 cut(s)	1283
MhlI	GDGCHC	3 cut(s)	151, 980, 1435
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	7 cut(s)	316, 563, 1496, 1504, 1593, 1840, 2344
MslI	CAYNNNNRTG	4 cut(s)	710, 816, 1191, 2110
MspI	CCGG	3 cut(s)	344, 566, 2198
MspR9I	CCNGG	2 cut(s)	699, 1077
Mva1269I	GAATGC	1 cut(s)	1970
MvaI	CCWGG	2 cut(s)	699, 1077
MwoI	GCNNNNNNNGC	8 cut(s)	38, 47, 179, 188, 1298, 2028, 2484, 2540
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	1987
NdeI	CATATG	2 cut(s)	1086, 1188
NlaIV	GGNNCC	4 cut(s)	6, 795, 2153, 2328
NmuCI	GTSAC	2 cut(s)	120, 426
NspI	RCATGY	1 cut(s)	1764
NspV	TTCGAA	1 cut(s)	26
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	1806
PciSI	GCTCTTC	1 cut(s)	2406
PctI	GAATGC	1 cut(s)	1970
PfeI	GAWTC	6 cut(s)	91, 242, 821, 995, 1232, 1271
PinAI	ACCGGT	2 cut(s)	343, 565
PkrI	GCNGC	4 cut(s)	49, 193, 1985, 2151
PleI	GAGTC	7 cut(s)	315, 562, 1495, 1503, 1592, 1840, 2344
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	7 cut(s)	315, 562, 1495, 1503, 1592, 1840, 2344
PshBI	ATTAAT	2 cut(s)	743, 2298
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	697, 1075
PspFI	CCCAGC	1 cut(s)	1968
PspGI	CCWGG	2 cut(s)	697, 1075
PspN4I	GGNNCC	4 cut(s)	6, 795, 2153, 2328
PspPI	GGNCC	3 cut(s)	781, 1352, 2011
PsrI	GAACNNNNNNTAC	2 cut(s)	2497, 2529
PstI	CTGCAG	1 cut(s)	2501
PstNI	CAGNNNCTG	1 cut(s)	1385
PsuI	RGATCY	1 cut(s)	1283
RsaI	GTAC	2 cut(s)	834, 1447
RsaNI	GTAC	2 cut(s)	833, 1446
RseI	CAYNNNNRTG	4 cut(s)	710, 816, 1191, 2110
SacI	GAGCTC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	2406
SatI	GCNGC	4 cut(s)	48, 192, 1984, 2150
Sau96I	GGNCC	3 cut(s)	781, 1352, 2011
ScaI	AGTACT	1 cut(s)	1447
SchI	GAGTC	7 cut(s)	316, 563, 1496, 1504, 1593, 1840, 2344
ScrFI	CCNGG	2 cut(s)	699, 1077
SduI	GDGCHC	3 cut(s)	151, 980, 1435
SfaNI	GCATC	9 cut(s)	148, 169, 1090, 1288, 1657, 2200, 2254, 2305, 2392
SfcI	CTRYAG	1 cut(s)	2497
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	2011
SmiMI	CAYNNNNRTG	4 cut(s)	710, 816, 1191, 2110
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SseBI	AGGCCT	1 cut(s)	1806
SsiI	CCGC	4 cut(s)	689, 1856, 1892, 2149
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	2133
SspMI	CTAG	5 cut(s)	1097, 1443, 1569, 1692, 2289
SstI	GAGCTC	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	1806
StyD4I	CCNGG	2 cut(s)	697, 1075
StyI	CCWWGG	2 cut(s)	1987, 2406
TaaI	ACNGT	4 cut(s)	734, 839, 1450, 1880
TaiI	ACGT	3 cut(s)	289, 2191, 2515
TaqI	TCGA	6 cut(s)	26, 507, 2077, 2208, 2340, 2346
TatI	WGTACW	2 cut(s)	832, 1445
TauI	GCSGC	1 cut(s)	2152
TfiI	GAWTC	6 cut(s)	91, 242, 821, 995, 1232, 1271
TscAI	CASTG	3 cut(s)	129, 636, 775
TseFI	GTSAC	2 cut(s)	120, 426
TseI	GCWGC	3 cut(s)	47, 191, 1983
Tsp45I	GTSAC	2 cut(s)	120, 426
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	3 cut(s)	129, 636, 775
VneI	GTGCAC	1 cut(s)	1431
VpaK11BI	GGWCC	1 cut(s)	2011
VspI	ATTAAT	2 cut(s)	743, 2298
XagI	CCTNNNNNAGG	1 cut(s)	391
XapI	RAATTY	4 cut(s)	1112, 1404, 1951, 2492
XbaI	TCTAGA	1 cut(s)	1096
XceI	RCATGY	1 cut(s)	1764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1994
XspI	CTAG	5 cut(s)	1097, 1443, 1569, 1692, 2289
ZraI	GACGTC	1 cut(s)	2189
ZrmI	AGTACT	1 cut(s)	1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.