Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006915

Physical Location & Seq

Genomic Coordinates Reverse (-)

29078281 .. 29078634

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0183800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAAATTCTTAGCTGGAATTGCAGGGAAATCTGCAACGACACTACTAAACGGGCATTGAAGGATTTGATCGCACAAAAGAAACCTCAGGTTGTGTTTTTATGTGAGACGAAGATAAACAGGCAGGAGGACTTTCGATCTCTGTACCTGGCTTTAGGTTTCCCGAACTCCAAAGAGGTTCTTAGCAACGGACTGGCTGGAGGGTTGGGACAGTTCTGGAGTGTAGAAATCGATCTGAGGGTGCACACAAAATTAGCGCATCACATTGATGTGGAAGTTCATGGAGGTCCTGGTGATCCACGGTGTCACGCCCCGATTTTTAACACAAATAAAAATCAATATATAATCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032259 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0080188 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

117

Amino Acids

13.27

Weight (kDa)

8.75

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20650 FvH4_2g20650 FvH4_2g20650
malus_domestica	MD00G1060700.v1.1
prunus_persica	Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1 Prupe.8G216300_v2.0.a1
pyrus_communis	pycom05g17400 pycom10g15310
rosa_chinensis	RchiOBHm_Chr6g0286831
rosa_laevigata	RLG00000012533
rosa_multiflora	Rmu_ssc0000279.1_g000009
rosa_roxburghii	Rroxscaffold_7G00181890
rosa_rugosa	Rorug06G0183800 Rorug06G0183900 Rorug06G0183900 Rorug06G0183900
rosa_samantha	Rh6AG295900 Rh6BG300200 Rh6CG308100 Rh6DG291900
rosa_wichuraiana	Rw6G025510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	147, 289
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	290
ApaLI	GTGCAC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	149, 291
BcoDI	GTCTC	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	149, 291
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	149, 291
BmsI	GCATC	1 cut(s)	268
BpmI	CTGGAG	2 cut(s)	219, 238
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	198
Bse21I	CCTNAGG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	149, 291
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	101, 227
BseNI	ACTGG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	69, 137, 232, 295
BspCNI	CTCAG	2 cut(s)	100, 228
BspDI	ATCGAT	1 cut(s)	231
BspPI	GGATC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	69, 137, 232, 295
Bst2UI	CCWGG	2 cut(s)	149, 291
Bst4CI	ACNGT	2 cut(s)	213, 303
BstDEI	CTNAG	4 cut(s)	11, 87, 182, 236
BstDSI	CCRYGG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	72, 140, 235, 298
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	69, 137, 232, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	2 cut(s)	149, 291
BstSCI	CCNGG	2 cut(s)	147, 289
BstSLI	GKGCMC	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	3 cut(s)	15, 152, 197
CviKI_1	RGCY	3 cut(s)	15, 152, 197
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	4 cut(s)	11, 87, 182, 236
DpnI	GATC	4 cut(s)	71, 139, 234, 297
DpnII	GATC	4 cut(s)	69, 137, 232, 295
Eco47I	GGWCC	1 cut(s)	287
Eco81I	CCTNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	147, 289
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	284
FaiI	YATR	5 cut(s)	103, 282, 342, 344, 352
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	280
GlaI	GCGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	219, 238
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	163, 217
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	213, 303
HpyCH4V	TGCA	3 cut(s)	24, 36, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	4 cut(s)	11, 87, 182, 236
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	69, 137, 232, 295
LweI	GCATC	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	71, 139, 234, 297
MboI	GATC	4 cut(s)	69, 137, 232, 295
MboII	GAAGA	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	6, 19, 251
MnlI	CCTC	6 cut(s)	96, 121, 169, 194, 231, 278
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	2 cut(s)	267, 269
MspR9I	CCNGG	2 cut(s)	149, 291
MvaI	CCWGG	2 cut(s)	149, 291
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	4 cut(s)	69, 137, 232, 295
NlaIII	CATG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	305
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	147, 289
PspGI	CCWGG	2 cut(s)	147, 289
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	267, 269
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	69, 137, 232, 295
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	149, 291
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	17, 88, 93, 150, 160, 180, 289
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	267, 269
Sse9I	AATT	3 cut(s)	6, 19, 251
StyD4I	CCNGG	2 cut(s)	147, 289
TaaI	ACNGT	2 cut(s)	213, 303
TaqI	TCGA	2 cut(s)	136, 231
TasI	AATT	3 cut(s)	6, 19, 251
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	17, 269
TspGWI	ACGGA	1 cut(s)	204
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.