Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009278

Physical Location & Seq

Genomic Coordinates Reverse (-)

25194587 .. 25197182

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCTGGAACGACAAGGGCTGAAACTATCAAAATTGATTCTGGTGTTGTTGCGGCCTTTTATTGAAGAAGTTTTAGAGTTGAAATTTAGACGGGCAAGAAAAGTTGTCCTTGACTTGGTAGAAGCTGATGAGTGCATGCCATTTTCACCTCGCTTTGCACCTCCTCTGTCTGCATTCACAACATCATCACATAGTTTGATTGCTGATAGTGGGATAAGATTTATGTGCATTGTTGAAGATATATTGGAACAGTTGACCCCCTTGACCATTTTGCATTTTGGTGGAAACATACTGAGTAGGATCGGTCAACTTTTTGATAAATACATGGATGCTTTAATTAAAGCCCTACCAGGTCCATCTGATGATGACAGTCTTACTGAGCTGAAGGAGTTTGTATCTTTTAGAGCTGAAACAGATTCAGAACAGCTTACCCTTTTGGGAGTTGCATTTACCATCTTGGATGAACTACTGCCGAATGCTGTAATGACCCTCTGGAAGCAGCAGACTGAAAGTGGGGAACCAAAAAGTGGACTTGCTGAAAATGTCACACCTATTCCAAGTACTTCTACAGAGTTAAAGGATTGGAGGCGTCGTCTTCAGCATTCATTTGACAAGCTAAGAGACCATTTCTGTCGGCAGTATGTCTTGAGCTTCATTTATTCAAGGGAAGGACAGACACGACTGGATGCCCAAATATATTTAAATGGGAATGGTGATGATTTGTATTGGGACTCAGCCCCTTTGCCTTCGCTTCCATTTCAGGCATTATTTGCAAAGCTGCAGCAATTAGCAACCGTGGCTGGAGATGTGTTACTTGGAAAAGAGAGAATTCAGAAAATTTTGCTTGCTAGGATAACTGAGACAGTTGTAATGTGGTTGTCCGATGAACAAGAGTTTTGGGCTGTGTTTGAGGATGATACAGGTCCTCTTCAGCCACTTGGGTTGCAGCAGTTAATTCTTGATATGCACTTCACTGTTGAAATTGCACGTTTTGCGGGTTACCCATCAAGGCATGTGCACCAGATTGCATCAGCTATAATTGCTCGTGCTATCAGGGCTTTTTCTGCTAGAGGCATAGAAGTACAAAGTGCACTCTCCGAGGATGAGTGGTTTGTTGAAACTGCAAAGTCGGCGATAAACAAACTACTTTTGGGAGCAGAGGGGTCAGAGACATCCGAGATTGATGAAGATAACATCGCTCTTCATGATGACATTGTATTGGATTCAAATGATTCTGTCTCTTCCCTTTCAAGTATAGATTCTTCAGAGTCTTTTGCCTCTGCAACTATGGGTGAACTTGACAGTCCAAAGCATTTCGACGATTCAGAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008104 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0031503 GO:0032501 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0034629 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051601 GO:0051640 GO:0051641 GO:0051704 GO:0060321 GO:0065003 GO:0070727 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo84_C

Protein Analysis

445

Amino Acids

49.68

Weight (kDa)

4.65

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10180
fragaria_vesca	FvH4_3g12130 FvH4_3g12130 FvH4_3g12130
malus_domestica	MD05G1254700.v1.1 MD10G1234800.v1.1
prunus_persica	Prupe.4G110000_v2.0.a1 Prupe.4G110000_v2.0.a1
pyrus_communis	pycom05g23270 pycom10g19660
rosa_chinensis	RchiOBHm_Chr5g0019861
rosa_laevigata	RLG00000032479
rosa_multiflora	Rmu_co8414241.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058310
rosa_rugosa	Rorug05G0054300 Rorug05G0054400 Rorug05G0054500.1
rosa_samantha	Rh5AG144700 Rh5BG143800 Rh5CG155500 Rh5DG143600
rosa_wichuraiana	Rw5G012780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	527
AciI	CCGC	2 cut(s)	52, 995
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	3 cut(s)	83, 828, 837
AcuI	CTGAAG	4 cut(s)	404, 581, 914, 1248
AcyI	GRCGYC	1 cut(s)	589
AfaI	GTAC	2 cut(s)	562, 1083
AfiI	CCNNNNNNNGG	2 cut(s)	115, 527
AgsI	TTSAA	8 cut(s)	65, 82, 236, 663, 980, 1118, 1227, 1251
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	8 cut(s)	125, 382, 407, 427, 616, 651, 778, 1034
AluI	AGCT	8 cut(s)	125, 382, 407, 427, 616, 651, 778, 1034
Alw21I	GWGCWC	2 cut(s)	1020, 1093
Alw26I	GTCTC	4 cut(s)	615, 854, 1163, 1243
Alw44I	GTGCAC	2 cut(s)	1016, 1089
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	53
ApaLI	GTGCAC	2 cut(s)	1016, 1089
ApeKI	GCWGC	4 cut(s)	499, 778, 781, 946
ApoI	RAATTY	3 cut(s)	83, 828, 837
AspS9I	GGNCC	2 cut(s)	353, 923
AsuHPI	GGTGA	3 cut(s)	138, 725, 1304
AvaII	GGWCC	2 cut(s)	353, 923
BaeGI	GKGCMC	2 cut(s)	1020, 1093
BarI	GAAGNNNNNNTAC	2 cut(s)	1246, 1278
BauI	CACGAG	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	587
Bbv12I	GWGCWC	2 cut(s)	1020, 1093
BbvI	GCAGC	4 cut(s)	511, 765, 793, 958
BccI	CCATC	3 cut(s)	364, 461, 1012
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	4 cut(s)	615, 854, 1163, 1243
BfaI	CTAG	2 cut(s)	849, 1068
BfmI	CTRYAG	2 cut(s)	567, 779
BisI	GCNGC	5 cut(s)	53, 500, 779, 782, 947
BlsI	GCNGC	5 cut(s)	54, 501, 780, 783, 948
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	2 cut(s)	353, 923
BmgT120I	GGNCC	2 cut(s)	353, 923
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	319, 676, 1037
BpiI	GAAGAC	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	667
BsaHI	GRCGYC	1 cut(s)	589
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	795, 1098
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 527
Bse1I	ACTGG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	795, 1098
BseGI	GGATG	6 cut(s)	334, 466, 691, 919, 1108, 1172
BseLI	CCNNNNNNNGG	2 cut(s)	115, 527
BseMII	CTCAG	4 cut(s)	284, 369, 747, 849
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	2 cut(s)	1020, 1093
BseXI	GCAGC	4 cut(s)	511, 765, 793, 958
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	1020, 1093
BslFI	GGGAC	1 cut(s)	743
BslI	CCNNNNNNNGG	2 cut(s)	115, 527
BsmAI	GTCTC	4 cut(s)	615, 854, 1163, 1243
BsmFI	GGGAC	1 cut(s)	743
BsmI	GAATGC	3 cut(s)	173, 481, 601
BsnI	GGCC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	1020, 1093
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	52, 995
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	4 cut(s)	285, 370, 746, 850
BspHI	TCATGA	1 cut(s)	1204
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	783
BspPI	GGATC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	1206
BspTNI	GGTCTC	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	2 cut(s)	795, 1098
BssMI	GATC	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	589
BssSI	CACGAG	1 cut(s)	1044
Bst2BI	CACGAG	1 cut(s)	1044
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	6 cut(s)	252, 371, 796, 865, 976, 1304
Bst6I	CTCTTC	3 cut(s)	933, 1206, 1246
BstACI	GRCGYC	1 cut(s)	589
BstAPI	GCANNNNNTGC	2 cut(s)	770, 992
BstC8I	GCNNGC	2 cut(s)	137, 846
BstDEI	CTNAG	5 cut(s)	293, 378, 617, 733, 858
BstDSI	CCRYGG	1 cut(s)	795
BstEII	GGTNACC	1 cut(s)	998
BstF5I	GGATG	6 cut(s)	334, 466, 691, 919, 1108, 1172
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	4 cut(s)	615, 854, 1163, 1243
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	7 cut(s)	770, 797, 992, 1040, 1055, 1064, 1130
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	2 cut(s)	139, 1016
BstPI	GGTNACC	1 cut(s)	998
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	2 cut(s)	567, 779
BstSLI	GKGCMC	2 cut(s)	1020, 1093
BstV1I	GCAGC	4 cut(s)	511, 765, 793, 958
BstV2I	GAAGAC	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	795
BtgZI	GCGATG	1 cut(s)	1180
BtsCI	GGATG	6 cut(s)	334, 466, 691, 919, 1108, 1172
BtsIMutI	CAGTG	1 cut(s)	972
Cac8I	GCNNGC	2 cut(s)	137, 846
CciI	TCATGA	1 cut(s)	1204
Cfr13I	GGNCC	2 cut(s)	353, 923
CseI	GACGC	1 cut(s)	578
CsiI	ACCWGGT	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	561, 1082
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviAII	CATG	4 cut(s)	136, 325, 1013, 1205
CviQI	GTAC	2 cut(s)	561, 1082
DdeI	CTNAG	5 cut(s)	293, 378, 617, 733, 858
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
DraI	TTTAAA	1 cut(s)	702
Eam1104I	CTCTTC	3 cut(s)	933, 1206, 1246
EarI	CTCTTC	3 cut(s)	933, 1206, 1246
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	353, 923
Eco57I	CTGAAG	4 cut(s)	404, 581, 914, 1248
Eco91I	GGTNACC	1 cut(s)	998
EcoO109I	RGGNCCY	1 cut(s)	923
EcoO65I	GGTNACC	1 cut(s)	998
EcoRI	GAATTC	1 cut(s)	828
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	139, 328, 1016, 1208
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	4 cut(s)	135, 324, 1012, 1204
FauI	CCCGC	1 cut(s)	988
Fnu4HI	GCNGC	5 cut(s)	53, 500, 779, 782, 947
FokI	GGATG	6 cut(s)	341, 473, 698, 926, 1115, 1159
Fsp4HI	GCNGC	5 cut(s)	53, 500, 779, 782, 947
FspBI	CTAG	2 cut(s)	849, 1068
GluI	GCNGC	5 cut(s)	53, 500, 779, 782, 947
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	1 cut(s)	55
HgaI	GACGC	1 cut(s)	578
Hin1I	GRCGYC	1 cut(s)	589
Hin1II	CATG	4 cut(s)	139, 328, 1016, 1208
HincII	GTYRAC	2 cut(s)	255, 308
HindII	GTYRAC	2 cut(s)	255, 308
HinfI	GANTC	8 cut(s)	37, 416, 731, 1223, 1232, 1259, 1268, 1322
HphI	GGTGA	3 cut(s)	138, 725, 1304
Hpy166II	GTNNAC	6 cut(s)	255, 308, 530, 1018, 1091, 1295
Hpy188I	TCNGA	9 cut(s)	361, 421, 834, 883, 1099, 1168, 1177, 1267, 1327
Hpy188III	TCNNGA	4 cut(s)	493, 646, 959, 1205
Hpy8I	GTNNAC	6 cut(s)	255, 308, 530, 1018, 1091, 1295
Hpy99I	CGWCG	2 cut(s)	594, 1322
HpyAV	CCTTC	3 cut(s)	379, 662, 756
HpyCH4III	ACNGT	6 cut(s)	252, 371, 796, 865, 976, 1304
HpyCH4IV	ACGT	1 cut(s)	988
HpyF10VI	GCNNNNNNNGC	7 cut(s)	770, 797, 992, 1040, 1055, 1064, 1130
HpyF3I	CTNAG	5 cut(s)	293, 378, 617, 733, 858
HpySE526I	ACGT	1 cut(s)	988
Hsp92I	GRCGYC	1 cut(s)	589
Hsp92II	CATG	4 cut(s)	139, 328, 1016, 1208
Kzo9I	GATC	1 cut(s)	300
LguI	GCTCTTC	1 cut(s)	1206
LmnI	GCTCC	1 cut(s)	1154
Lsp1109I	GCAGC	4 cut(s)	511, 765, 793, 958
LweI	GCATC	3 cut(s)	319, 676, 1037
MabI	ACCWGGT	1 cut(s)	349
MaeI	CTAG	2 cut(s)	849, 1068
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	3 cut(s)	544, 810, 998
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	8 cut(s)	77, 248, 587, 920, 1193, 1199, 1233, 1254
MhlI	GDGCHC	2 cut(s)	1020, 1093
MluCI	AATT	9 cut(s)	32, 83, 336, 785, 828, 837, 954, 981, 1038
MlyI	GAGTC	2 cut(s)	725, 1277
MseI	TTAA	5 cut(s)	335, 339, 575, 701, 953
MslI	CAYNNNNRTG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	351
Mva1269I	GAATGC	3 cut(s)	173, 481, 601
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	7 cut(s)	770, 797, 992, 1040, 1055, 1064, 1130
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	4 cut(s)	139, 328, 1016, 1208
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	2 cut(s)	139, 1016
PacI	TTAATTAA	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	139
PagI	TCATGA	1 cut(s)	1204
PciSI	GCTCTTC	1 cut(s)	1206
PctI	GAATGC	3 cut(s)	173, 481, 601
PfeI	GAWTC	6 cut(s)	37, 416, 1223, 1232, 1259, 1322
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	54, 501, 780, 783, 948
PleI	GAGTC	2 cut(s)	725, 1276
PpsI	GAGTC	2 cut(s)	725, 1276
PpuMI	RGGWCCY	1 cut(s)	923
Psp5II	RGGWCCY	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	998
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	2 cut(s)	353, 923
PspPPI	RGGWCCY	1 cut(s)	923
PstI	CTGCAG	1 cut(s)	783
RsaI	GTAC	2 cut(s)	562, 1083
RsaNI	GTAC	2 cut(s)	561, 1082
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	1206
SaqAI	TTAA	5 cut(s)	335, 339, 575, 701, 953
SatI	GCNGC	5 cut(s)	53, 500, 779, 782, 947
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	2 cut(s)	353, 923
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	2 cut(s)	725, 1277
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	1020, 1093
SexAI	ACCWGGT	1 cut(s)	349
SfaNI	GCATC	3 cut(s)	319, 676, 1037
SfcI	CTRYAG	2 cut(s)	567, 779
SinI	GGWCC	2 cut(s)	353, 923
SmiI	ATTTAAAT	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	9 cut(s)	32, 83, 336, 785, 828, 837, 954, 981, 1038
SsiI	CCGC	2 cut(s)	52, 995
SspMI	CTAG	2 cut(s)	849, 1068
StyD4I	CCNGG	1 cut(s)	349
SwaI	ATTTAAAT	1 cut(s)	702
TaaI	ACNGT	6 cut(s)	252, 371, 796, 865, 976, 1304
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	1 cut(s)	1317
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	9 cut(s)	32, 83, 336, 785, 828, 837, 954, 981, 1038
TatI	WGTACW	2 cut(s)	560, 1081
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	6 cut(s)	37, 416, 1223, 1232, 1259, 1322
Tru1I	TTAA	5 cut(s)	335, 339, 575, 701, 953
Tru9I	TTAA	5 cut(s)	335, 339, 575, 701, 953
TscAI	CASTG	1 cut(s)	979
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	4 cut(s)	499, 778, 781, 946
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	6 cut(s)	477, 594, 643, 900, 1193, 1200
TspRI	CASTG	1 cut(s)	979
Van91I	CCANNNNNTGG	1 cut(s)	527
VneI	GTGCAC	2 cut(s)	1016, 1089
VpaK11BI	GGWCC	2 cut(s)	353, 923
XapI	RAATTY	3 cut(s)	83, 828, 837
XceI	RCATGY	2 cut(s)	139, 1016
XspI	CTAG	2 cut(s)	849, 1068
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.