Rorug05G0054300

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000491
Physical Location & Seq
Forward (+)
4763692 .. 4765939
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0054300.1

Sequence Viewer

Length: 312 bp
ATGCTTAAGCTTGTGTATAAAGGGGAAGAGTTACTTGGGGAGGTAGAGGTATACCCAGAAGAGTTGAACAACAAGAAAATCTTGGATGAGTTGAAGGAAATCAGAATAAGCCATTTTTCGCAATCCAGTGAGAGGTGTCCACCTGTGGCTGTGCTTCACACCATTAGCTCTAATGGGGTTTGCTTCAAAATGGAGTCAAAGTCTTCTTCTTCTTCTTCTGTTCAGGACACATCGCCGCTCTTTCTTTTGCACTCTTCCTGTATCATGGAGAACAAGTTTATGTTGAGAGAAGAATTCTTGAATTATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

103

Amino Acids

11.79

Weight (kDa)

5.34

Isoelectric Point (pI)

62.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 51
AciI CCGC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 132
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 4 cut(s) 67, 94, 187, 301
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 2 cut(s) 10, 168
AluI AGCT 2 cut(s) 10, 168
ApoI RAATTY 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 195
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 195
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 132
BspACI CCGC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 126
BssNAI GTATAC 1 cut(s) 52
Bst1107I GTATAC 1 cut(s) 52
Bst6I CTCTTC 3 cut(s) 21, 54, 259
BstAFI CTTAAG 1 cut(s) 5
BstF5I GGATG 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 133
CviAII CATG 1 cut(s) 265
CviJI RGCY 4 cut(s) 10, 111, 149, 168
CviKI_1 RGCY 4 cut(s) 10, 111, 149, 168
Eam1104I CTCTTC 3 cut(s) 21, 54, 259
EarI CTCTTC 3 cut(s) 21, 54, 259
EcoRI GAATTC 1 cut(s) 293
FaeI CATG 1 cut(s) 268
FaiI YATR 5 cut(s) 18, 52, 266, 281, 306
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 65, 97
FatI CATG 1 cut(s) 264
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 52, 140
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 2 cut(s) 224, 298
Hpy8I GTNNAC 2 cut(s) 52, 140
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 250
Hsp92II CATG 1 cut(s) 268
LpnPI CCDG 5 cut(s) 69, 139, 156, 209, 271
MaeIII GTNAC 1 cut(s) 30
MbiI CCGCTC 1 cut(s) 238
MboII GAAGA 9 cut(s) 38, 71, 195, 198, 201, 204, 207, 246, 302
MluCI AATT 2 cut(s) 293, 301
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 34, 40, 126
MseI TTAA 1 cut(s) 6
MspCI CTTAAG 1 cut(s) 5
NlaIII CATG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 236
SchI GAGTC 1 cut(s) 203
SetI ASST 6 cut(s) 12, 45, 51, 137, 145, 170
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 2 cut(s) 293, 301
SsiI CCGC 1 cut(s) 236
TasI AATT 2 cut(s) 293, 301
TauI GCSGC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 5
XapI RAATTY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.