Rh5AG144500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000491
Physical Location & Seq
Forward (+)
15258962 .. 15260661
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG144500.1

Sequence Viewer

Length: 276 bp
ATGGCTGCATATTTTTCTTTTATCAGCGTTACACCACCAGCACGTTACAACTTCGACGATGTCGGGGGACCCAGTCCCAAGACTGCAACTCCAATTAGGAATGCATGGTGGTCAGCAGTTCTTTGTCGAATTTGGGAAATATTGTCAGAAGCAACCATTCTAATATGGCAAATACTATTAGATGTTACAACTCTGATTTTGAGAAGGACATGGTCAACAGTCGCAGATGGAGTTGTGATATTATACAGAGTCGCATATTTAATCTCTATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.26

Weight (kDa)

7.9

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 68
AvaII GGWCC 1 cut(s) 68
BccI CCATC 1 cut(s) 221
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 69, 70
BmrI ACTGGG 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bse1I ACTGG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 72
BslFI GGGAC 2 cut(s) 60, 81
BsmFI GGGAC 2 cut(s) 60, 81
BsmI GAATGC 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 69, 70
BsrI ACTGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 68
CviAII CATG 2 cut(s) 105, 210
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 106
FaeI CATG 2 cut(s) 108, 213
FaiI YATR 6 cut(s) 10, 106, 166, 211, 244, 256
FaqI GGGAC 2 cut(s) 60, 81
FatI CATG 2 cut(s) 104, 209
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 108, 213
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 148, 195
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 8, 86, 104
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 2 cut(s) 108, 213
KflI GGGWCCC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 51, 85
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 3 cut(s) 28, 44, 184
MluCI AATT 2 cut(s) 93, 129
MlyI GAGTC 1 cut(s) 258
Mph1103I ATGCAT 1 cut(s) 106
MseI TTAA 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 106
NlaIII CATG 2 cut(s) 108, 213
NlaIV GGNNCC 2 cut(s) 69, 70
NsiI ATGCAT 1 cut(s) 106
PctI GAATGC 1 cut(s) 106
PflFI GACNNNGTC 3 cut(s) 59, 72, 211
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 69, 70
PspPI GGNCC 1 cut(s) 68
PspPPI RGGWCCY 1 cut(s) 68
PsyI GACNNNGTC 3 cut(s) 59, 72, 211
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 258
SetI ASST 1 cut(s) 46
SgeI CNNG 7 cut(s) 50, 54, 76, 84, 91, 117, 222
SinI GGWCC 1 cut(s) 68
Sse9I AATT 2 cut(s) 93, 129
SspI AATATT 1 cut(s) 141
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 54, 127
TasI AATT 2 cut(s) 93, 129
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 1 cut(s) 5
Tth111I GACNNNGTC 3 cut(s) 59, 72, 211
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.