Rroxscaffold_4G00311590

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000491
Physical Location & Seq
Forward (+)
34156386 .. 34159118
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311590.1

Sequence Viewer

Length: 519 bp
ATGCAGGATGGAAGCGGGTTAAAGACCTTGTGCAGATATATGAAGCCAGTTGTCTATAACAAAGAGCACATTCTTGAAGTACAGGAGCTTGTTCAGATGATCTTCATCATACAAGGTGAAATTGACCAATATTGTACCGAAACTCAGATGACCAACAGCCCTTTTAAGCGTCTAAGTAAAGGTGATTATTATGGAATACAAATTCAACTTTGGGCAGCAAGGAACTACATGAGGTCTTATTATGACCCTCTTCCAACTTTCACTGGATGGGTCAAATGCCAAACAAGAGTAGAAGCCTTTAAACTCCAGGCCATGGACTTGATGCAAATTATCACCCAGTCGAAGATTGATTCTGAGCAGTCGGAAAAGTTGGCAGGCATTGAAGACAACACTGATCAGATACCAAACGAGTCATCTCCAAGGGAAACTCCGGATGAGATCCGAATCTTCGATGGCTGCTTTGATGTGATGTGCTTCTACCTCAACAAACTCCGTCGTCCGACACCCGCGACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

172

Amino Acids

20.08

Weight (kDa)

5.1

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 313
AccII CGCG 1 cut(s) 509
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 2 cut(s) 15, 507
AclWI GGATC 1 cut(s) 433
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 2 cut(s) 81, 136
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 3 cut(s) 77, 206, 383
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 69
AlwI GGATC 1 cut(s) 433
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 215, 456
ApoI RAATTY 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 128, 194, 325
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 227, 443
BccI CCATC 3 cut(s) 2, 261, 446
BciT130I CCWGG 1 cut(s) 308
BclI TGATCA 1 cut(s) 394
BisI GCNGC 2 cut(s) 216, 457
BlsI GCNGC 2 cut(s) 217, 458
Bme1390I CCNGG 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 290
BsaBI GATNNNNATC 2 cut(s) 104, 443
BsaJI CCNNGG 2 cut(s) 312, 419
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 3 cut(s) 47, 268, 337
Bse8I GATNNNNATC 2 cut(s) 104, 443
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 312, 419
BseGI GGATG 3 cut(s) 13, 272, 439
BseJI GATNNNNATC 2 cut(s) 104, 443
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 158, 345
BseNI ACTGG 3 cut(s) 47, 268, 337
BseXI GCAGC 2 cut(s) 227, 443
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 69
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 99, 394, 438
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 2 cut(s) 15, 507
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 157, 346
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 509
BspPI GGATC 1 cut(s) 433
BsrI ACTGG 3 cut(s) 47, 268, 337
BssECI CCNNGG 2 cut(s) 312, 419
BssMI GATC 3 cut(s) 99, 394, 438
BssT1I CCWWGG 2 cut(s) 312, 419
Bst2UI CCWGG 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 3 cut(s) 144, 173, 354
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 13, 272, 439
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 3 cut(s) 102, 397, 441
BstMBI GATC 3 cut(s) 99, 394, 438
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 227, 443
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 3 cut(s) 13, 272, 439
BtsIMutI CAGTG 2 cut(s) 261, 390
Cac8I GCNNGC 1 cut(s) 376
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 80, 135
CviAII CATG 2 cut(s) 229, 313
CviJI RGCY 6 cut(s) 46, 88, 159, 296, 311, 456
CviKI_1 RGCY 6 cut(s) 46, 88, 159, 296, 311, 456
CviQI GTAC 2 cut(s) 80, 135
DdeI CTNAG 3 cut(s) 144, 173, 354
DpnI GATC 3 cut(s) 101, 396, 440
DpnII GATC 3 cut(s) 99, 394, 438
DraI TTTAAA 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 312, 419
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 312, 419
ErhI CCWWGG 2 cut(s) 312, 419
FaeI CATG 2 cut(s) 232, 316
FaiI YATR 8 cut(s) 39, 41, 57, 110, 192, 230, 243, 314
FatI CATG 2 cut(s) 228, 312
FauI CCCGC 2 cut(s) 8, 514
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 216, 457
FokI GGATG 3 cut(s) 20, 279, 446
Fsp4HI GCNGC 2 cut(s) 216, 457
GluI GCNGC 2 cut(s) 216, 457
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 311
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 232, 316
HinfI GANTC 3 cut(s) 350, 410, 444
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 128, 194, 325
Hpy188I TCNGA 7 cut(s) 96, 147, 355, 364, 399, 443, 501
Hpy188III TCNNGA 2 cut(s) 74, 431
Hpy99I CGWCG 1 cut(s) 498
HpyCH4V TGCA 3 cut(s) 4, 33, 325
HpyF3I CTNAG 3 cut(s) 144, 173, 354
Hsp92II CATG 2 cut(s) 232, 316
Kpn2I TCCGGA 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 3 cut(s) 99, 394, 438
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 8 cut(s) 60, 68, 249, 293, 320, 350, 360, 444
Lsp1109I GCAGC 2 cut(s) 227, 443
LweI GCATC 1 cut(s) 312
MalI GATC 3 cut(s) 101, 396, 440
MboI GATC 3 cut(s) 99, 394, 438
MboII GAAGA 5 cut(s) 94, 242, 355, 395, 439
MflI RGATCY 1 cut(s) 438
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 4 cut(s) 120, 201, 327, 514
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 2 cut(s) 278, 342
MnlI CCTC 3 cut(s) 225, 258, 491
MroI TCCGGA 1 cut(s) 430
MseI TTAA 3 cut(s) 20, 165, 300
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 509
NcoI CCATGG 1 cut(s) 312
NdeII GATC 3 cut(s) 99, 394, 438
NlaIII CATG 2 cut(s) 232, 316
PfeI GAWTC 2 cut(s) 350, 444
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 2 cut(s) 217, 458
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PsuI RGATCY 1 cut(s) 438
RsaI GTAC 2 cut(s) 81, 136
RsaNI GTAC 2 cut(s) 80, 135
SaqAI TTAA 3 cut(s) 20, 165, 300
SatI GCNGC 2 cut(s) 216, 457
Sau3AI GATC 3 cut(s) 99, 394, 438
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 69
SetI ASST 6 cut(s) 29, 90, 118, 184, 236, 483
SfaNI GCATC 1 cut(s) 312
Sse9I AATT 4 cut(s) 120, 201, 327, 514
SsiI CCGC 2 cut(s) 15, 507
SspI AATATT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 2 cut(s) 312, 419
TaqI TCGA 2 cut(s) 341, 450
TasI AATT 4 cut(s) 120, 201, 327, 514
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 2 cut(s) 350, 444
Tru1I TTAA 3 cut(s) 20, 165, 300
Tru9I TTAA 3 cut(s) 20, 165, 300
TscAI CASTG 2 cut(s) 268, 397
TseI GCWGC 2 cut(s) 215, 456
TspDTI ATGAA 2 cut(s) 56, 94
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 2 cut(s) 268, 397
Van91I CCANNNNNTGG 1 cut(s) 313
XapI RAATTY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.