FvH4_6g40660

N-acetylglucosaminyltransferase II (MGAT2)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32110590 .. 32112034
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40660.t1

Sequence Viewer

Length: 474 bp
ATGGCGGCATCTTCTTGTTTTTCTGTTTTACCAGCCTTCCATCGTCACCAAGATGAGGAAAACAAGTGTCTTGGAGTTGACATAAAGCTCAGGAATACACTTCTTGTGCTGCGATCACTCACCGACTTTGCTAGTCTAACTGAAGTTCGAGATCGGAACGTCGACCAAATCCTGGACTCCCACACCGACACCGAATCCTACTTTGACTTTGAACCGAGGCCGATTTTAAATCTGTTCCAAAAACTGAAGTCCAAAATAGAGGCAATACCTTGGATATCTGTCCCTCTCGTCATTGATTTTCTTGCTCTTCTTCCTGTCCCACAGCTCGTCAGCTCAGATAAGCTCATCAAGGTCAAAAGCTCCGACAAGATCCCCTCCGTTAAGTCCCTCGTAGCTCCGTCCAAGCCCACCGCTGCTGCTCCGACGAAGAAGAAGCTCGCCGCCGCGGCCAAGCCCAAAAGGAATAAGGAGTGA

Protein Analysis

158

Amino Acids

17.46

Weight (kDa)

9.39

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 446
AciI CCGC 5 cut(s) 5, 411, 441, 444, 446
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 2 cut(s) 162, 266
AfiI CCNNNNNNNGG 2 cut(s) 55, 172
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 7 cut(s) 88, 325, 333, 343, 360, 395, 436
AluI AGCT 7 cut(s) 88, 325, 333, 343, 360, 395, 436
AlwI GGATC 1 cut(s) 364
AoxI GGCC 2 cut(s) 218, 447
ApeKI GCWGC 3 cut(s) 109, 413, 416
AsuHPI GGTGA 2 cut(s) 38, 112
BbvI GCAGC 3 cut(s) 96, 400, 403
BccI CCATC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 7 cut(s) 6, 110, 414, 417, 441, 444, 447
BlsI GCNGC 7 cut(s) 7, 111, 415, 418, 442, 445, 448
Bme1390I CCNGG 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 215, 269, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 172
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 3 cut(s) 215, 269, 444
BseLI CCNNNNNNNGG 2 cut(s) 55, 172
BseMII CTCAG 2 cut(s) 103, 348
BseXI GCAGC 3 cut(s) 96, 400, 403
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 2 cut(s) 220, 449
BslFI GGGAC 3 cut(s) 266, 302, 370
BslI CCNNNNNNNGG 2 cut(s) 55, 172
BsmFI GGGAC 3 cut(s) 266, 302, 370
BsnI GGCC 2 cut(s) 220, 449
Bsp143I GATC 3 cut(s) 113, 151, 369
BspACI CCGC 5 cut(s) 5, 411, 441, 444, 446
BspANI GGCC 2 cut(s) 220, 449
BspCNI CTCAG 2 cut(s) 102, 347
BspFNI CGCG 1 cut(s) 446
BspPI GGATC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 312
BssECI CCNNGG 3 cut(s) 215, 269, 444
BssMI GATC 3 cut(s) 113, 151, 369
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 89, 334
BstDSI CCRYGG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 446
BstKTI GATC 3 cut(s) 116, 154, 372
BstMBI GATC 3 cut(s) 113, 151, 369
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 3 cut(s) 96, 400, 403
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuRI GGCC 2 cut(s) 220, 449
BtgI CCRYGG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 438
Cfr42I CCGCGG 1 cut(s) 447
DdeI CTNAG 2 cut(s) 89, 334
DpnI GATC 3 cut(s) 115, 153, 371
DpnII GATC 3 cut(s) 113, 151, 369
DraI TTTAAA 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 269
Eco32I GATATC 1 cut(s) 276
Eco57I CTGAAG 2 cut(s) 162, 266
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaiI YATR 1 cut(s) 83
FaqI GGGAC 3 cut(s) 266, 302, 370
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 7 cut(s) 6, 110, 414, 417, 441, 444, 447
Fsp4HI GCNGC 7 cut(s) 6, 110, 414, 417, 441, 444, 447
FspBI CTAG 1 cut(s) 132
GluI GCNGC 7 cut(s) 6, 110, 414, 417, 441, 444, 447
HaeIII GGCC 2 cut(s) 220, 449
HincII GTYRAC 2 cut(s) 79, 163
HindII GTYRAC 2 cut(s) 79, 163
HinfI GANTC 2 cut(s) 176, 194
HphI GGTGA 2 cut(s) 38, 112
Hpy166II GTNNAC 2 cut(s) 79, 163
Hpy188I TCNGA 4 cut(s) 156, 337, 364, 423
Hpy188III TCNNGA 2 cut(s) 91, 149
Hpy8I GTNNAC 2 cut(s) 79, 163
Hpy99I CGWCG 2 cut(s) 164, 427
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 2 cut(s) 89, 334
HpySE526I ACGT 1 cut(s) 159
KspI CCGCGG 1 cut(s) 447
Kzo9I GATC 3 cut(s) 113, 151, 369
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 3 cut(s) 365, 400, 424
LpnPI CCDG 5 cut(s) 45, 76, 158, 185, 327
Lsp1109I GCAGC 3 cut(s) 96, 400, 403
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 44
MalI GATC 3 cut(s) 115, 153, 371
MboI GATC 3 cut(s) 113, 151, 369
MboII GAAGA 5 cut(s) 3, 299, 302, 439, 442
MflI RGATCY 1 cut(s) 369
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 387, 446
MnlI CCTC 6 cut(s) 49, 210, 253, 294, 385, 398
MseI TTAA 2 cut(s) 227, 381
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 413, 446
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 3 cut(s) 113, 151, 369
NmuCI GTSAC 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 7 cut(s) 7, 111, 415, 418, 442, 445, 448
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 51
SacII CCGCGG 1 cut(s) 447
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 227, 381
SatI GCNGC 7 cut(s) 6, 110, 414, 417, 441, 444, 447
Sau3AI GATC 3 cut(s) 113, 151, 369
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 173
SfaNI GCATC 1 cut(s) 17
Sfr303I CCGCGG 1 cut(s) 447
SgrBI CCGCGG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 51
SsiI CCGC 5 cut(s) 5, 411, 441, 444, 446
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 269
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 148, 162
TauI GCSGC 4 cut(s) 8, 443, 446, 449
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 227, 381
Tru9I TTAA 2 cut(s) 227, 381
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 3 cut(s) 109, 413, 416
Tsp45I GTSAC 1 cut(s) 44
TspGWI ACGGA 2 cut(s) 367, 387
Van91I CCANNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.