RchiOBHm_Chr5g0019821

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000491
Physical Location & Seq
Forward (+)
14249905 .. 14250824
920 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29995

Sequence Viewer

Length: 720 bp
ATGATTGCGAGAGCATGTTACGCAGTTGCATATTTAATTTGGAAAGCAGGCACCTTCGTCGCAGTAAAATGGGAACGGGCATTTGTGCTATCATGTATTGCAGTCTCATTGGATCCTTTATTCCTTTACATTCCAATCGTCGATGAGACTAACAAGTGCCTTAACATGGACAAGACGTTGAGAACTACAGCTCTCGTCCTTCGTACACTCACGGATTTCCTTTTATTAACCCATATCGTAGCTGAAATTTGTCAATGTATCCAGGACCAGAAGGACAAAGAATATTATTTGTCAACCGACAAGTACTTGTCGACCGACTACCCCAAGTATTTGTCCGAAGACTCGAATCCCCATTCCGAATACGACAAGGAGTTTGATCGCGACCCGGAGGCTTTATGCATATATCCAGTGAAGTCATTCGTTGATACTAACCTGCCGTGGTTAACTCCCTCTGTCATCATCAAATTACTTGCTATTATTCCCGTTCCACAGGTGGCAATATTAAGGGGCTTTTTCAGAATGACAGGCTCTGATTTCTATGTTATAAGAAAATTTCTCAACATTGCACTCGTCCTCCAATATTTGCCAAGAGTCTGTCAAATCTACTTAACCAAGAGGCAATTTAGAATGGGAGGAAAATGGCCTCAACCTTTGTTCAATTTGTATCTATACATCCTTGCCGGTCATGTAAGTTTCATCTCCACATTTTTCATTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

239

Amino Acids

27.69

Weight (kDa)

8.38

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 311
AccII CGCG 1 cut(s) 381
AclWI GGATC 2 cut(s) 107, 120
AcsI RAATTY 2 cut(s) 246, 551
AfaI GTAC 2 cut(s) 205, 305
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 658
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 191, 242
AluI AGCT 2 cut(s) 191, 242
Alw26I GTCTC 2 cut(s) 109, 140
AlwI GGATC 2 cut(s) 107, 120
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 1 cut(s) 641
ApoI RAATTY 2 cut(s) 246, 551
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
Asp700I GAANNNNTTC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 345
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 263
BciVI GTATCC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 2 cut(s) 109, 140
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 441
BfuI GTATCC 1 cut(s) 269
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 263, 386
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 52, 114
BmrFI CCNGG 2 cut(s) 263, 386
BpiI GAAGAC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 437
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 437
BseGI GGATG 1 cut(s) 672
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 561
BseNI ACTGG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 1 cut(s) 643
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 315
BsiSI CCGG 2 cut(s) 386, 681
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 109, 140
BsnI GGCC 1 cut(s) 643
Bsp143I GATC 2 cut(s) 112, 376
Bsp68I TCGCGA 1 cut(s) 381
BspANI GGCC 1 cut(s) 643
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 52, 114
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 2 cut(s) 107, 120
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 561
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 437
BssMI GATC 2 cut(s) 112, 376
Bst2UI CCWGG 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 437
BstF5I GGATG 1 cut(s) 672
BstFNI CGCG 1 cut(s) 381
BstKTI GATC 2 cut(s) 115, 379
BstMAI GTCTC 2 cut(s) 109, 140
BstMBI GATC 2 cut(s) 112, 376
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 261, 384
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 643
BtgI CCRYGG 1 cut(s) 437
BtsCI GGATG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 414
BtuMI TCGCGA 1 cut(s) 381
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 530
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 204, 304
CviAII CATG 4 cut(s) 15, 93, 166, 686
CviJI RGCY 6 cut(s) 191, 242, 392, 510, 528, 643
CviKI_1 RGCY 6 cut(s) 191, 242, 392, 510, 528, 643
CviQI GTAC 2 cut(s) 204, 304
DpnI GATC 2 cut(s) 114, 378
DpnII GATC 2 cut(s) 112, 376
Eco47I GGWCC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 401
FaeI CATG 4 cut(s) 18, 96, 169, 689
FatI CATG 4 cut(s) 14, 92, 165, 685
FblI GTMKAC 1 cut(s) 311
FokI GGATG 1 cut(s) 659
HaeIII GGCC 1 cut(s) 643
HapII CCGG 2 cut(s) 386, 681
Hin1II CATG 4 cut(s) 18, 96, 169, 689
HincII GTYRAC 3 cut(s) 294, 312, 444
HindII GTYRAC 3 cut(s) 294, 312, 444
HinfI GANTC 3 cut(s) 341, 346, 591
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 2 cut(s) 386, 681
Hpy166II GTNNAC 4 cut(s) 206, 294, 312, 444
Hpy188I TCNGA 4 cut(s) 337, 358, 518, 532
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 4 cut(s) 206, 294, 312, 444
Hpy99I CGWCG 2 cut(s) 62, 143
HpyAV CCTTC 3 cut(s) 64, 209, 265
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 29, 101, 399, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 4 cut(s) 18, 96, 169, 689
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 112, 376
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 114, 378
MboI GATC 2 cut(s) 112, 376
MboII GAAGA 1 cut(s) 350
MflI RGATCY 1 cut(s) 112
MluCI AATT 6 cut(s) 36, 246, 464, 551, 620, 658
MlyI GAGTC 2 cut(s) 335, 600
MnlI CCTC 6 cut(s) 382, 460, 584, 609, 626, 654
Mph1103I ATGCAT 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 6 cut(s) 35, 162, 227, 443, 503, 608
MspI CCGG 2 cut(s) 386, 681
MspR9I CCNGG 2 cut(s) 263, 386
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 386
NdeII GATC 2 cut(s) 112, 376
NlaIII CATG 4 cut(s) 18, 96, 169, 689
NlaIV GGNNCC 2 cut(s) 52, 114
NruI TCGCGA 1 cut(s) 381
NsiI ATGCAT 1 cut(s) 401
NspI RCATGY 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 261
PleI GAGTC 2 cut(s) 335, 599
PpsI GAGTC 2 cut(s) 335, 599
PsiI TTATAA 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 52, 114
PspPI GGNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 112
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 2 cut(s) 205, 305
RsaNI GTAC 2 cut(s) 204, 304
SalI GTCGAC 1 cut(s) 310
SaqAI TTAA 6 cut(s) 35, 162, 227, 443, 503, 608
Sau3AI GATC 2 cut(s) 112, 376
Sau96I GGNCC 1 cut(s) 265
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 2 cut(s) 335, 600
ScrFI CCNGG 2 cut(s) 263, 386
SetI ASST 7 cut(s) 56, 179, 193, 244, 435, 495, 652
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 265
Sse9I AATT 6 cut(s) 36, 246, 464, 551, 620, 658
SspI AATATT 3 cut(s) 284, 501, 581
StyD4I CCNGG 2 cut(s) 261, 384
TaiI ACGT 1 cut(s) 179
TaqI TCGA 3 cut(s) 141, 311, 344
TaqII GACCGA 1 cut(s) 329
TasI AATT 6 cut(s) 36, 246, 464, 551, 620, 658
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 6 cut(s) 35, 162, 227, 443, 503, 608
Tru9I TTAA 6 cut(s) 35, 162, 227, 443, 503, 608
TscAI CASTG 1 cut(s) 414
TspDTI ATGAA 2 cut(s) 685, 700
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 246, 551
XceI RCATGY 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.