Rmu_sc0011922.1_g000003

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011922.1
Physical Location & Seq
Forward (+)
10648 .. 12390
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011922.1_g000003.1.cds

Sequence Viewer

Length: 948 bp
atggaaaaccaaccgggcgagagcgtcgccgtaagccttccatcgccaccagtgtaccatttggagaggtcagcagctacagcttcaatgagaaaattgtggtcaacagttactcatctaattagacaactatggtcaaccgttatttatccaattggacaattttgctgggaactgatatttactcccagttggacattgtgtgaggctatctccaacgcagacagtccaatagactacattaaaattgggactgtatgtctggcacatataattcttttacccatcaaatatacatggaaactgctaagaaggaaggcgattctgacatgtattgcagtgtcgttggatcctttcttcttttatattccaatcatcaatcaggaaaacaagtgtcttggagttgacaaaaaactaaggaatacacttcttgtgttacgatcggtgacggattttgctagtgtattgcatattgtatctcaagttcgggattggaccatcgaccaacaccccgactcccacacggacaccgaatcctactttgactctgaagccaggccgacatcatctctgttgcaaaaactgatgaagtccatagtagaggcaataaatgggaggatgccttggttatctctctctgtcctgattgattttcttgttcttcttccaattccgcaggtggcaatagtagttgtcttcttcaaaatgggaggctctaaatttttccttcaaagaacgattctcaatgtccttctaatatttcaatacatcctcagggtttgtcaaatctacctatcaagcaagaaactagaaaggattggaatatgggttaaagatctcctctgcaaaatttcagccaatttggtgatcattaaggcctcaaaaactgcaaattacaacaatgtacacgaacggttccggttcgacatattcggttcattcgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

315

Amino Acids

36.04

Weight (kDa)

9.2

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AciI CCGC 1 cut(s) 674
AclWI GGATC 2 cut(s) 344, 357
AcsI RAATTY 2 cut(s) 719, 849
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 2 cut(s) 56, 906
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 4 cut(s) 87, 703, 731, 764
AhdI GACNNNNNGTC 1 cut(s) 258
AjnI CCWGG 1 cut(s) 554
AluBI AGCT 2 cut(s) 77, 83
AluI AGCT 2 cut(s) 77, 83
AlwI GGATC 2 cut(s) 344, 357
AoxI GGCC 2 cut(s) 557, 876
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 719, 849
AspS9I GGNCC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 457, 877
AvaII GGWCC 1 cut(s) 495
AxyI CCTNAGG 1 cut(s) 773
BaeI ACNNNNGTAYC 2 cut(s) 38, 71
BamHI GGATCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 688
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 49, 293, 506
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 556
BclI TGATCA 1 cut(s) 867
BcnI CCSGG 1 cut(s) 15
BfaI CTAG 2 cut(s) 459, 809
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 667
BglII AGATCT 1 cut(s) 835
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 15, 556
Bme18I GGWCC 1 cut(s) 495
BmeRI GACNNNNNGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 495
BmiI GGNNCC 2 cut(s) 351, 917
BmrFI CCNGG 2 cut(s) 15, 556
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 609
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 688
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 623
BsaWI WCCGGW 1 cut(s) 918
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bse1I ACTGG 2 cut(s) 50, 189
Bse21I CCTNAGG 1 cut(s) 773
BseBI CCWGG 1 cut(s) 556
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 2 cut(s) 624, 768
BseMII CTCAG 1 cut(s) 787
BseNI ACTGG 2 cut(s) 50, 189
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 443
BshFI GGCC 2 cut(s) 559, 878
BsiEI CGRYCG 1 cut(s) 443
BsiSI CCGG 2 cut(s) 14, 919
BslFI GGGAC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 2 cut(s) 559, 878
Bsp1407I TGTACA 1 cut(s) 904
Bsp143I GATC 4 cut(s) 349, 440, 835, 867
BspACI CCGC 1 cut(s) 674
BspANI GGCC 2 cut(s) 559, 878
BspCNI CTCAG 1 cut(s) 786
BspLI GGNNCC 2 cut(s) 351, 917
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 2 cut(s) 344, 357
BsrGI TGTACA 1 cut(s) 904
BsrI ACTGG 2 cut(s) 50, 189
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 4 cut(s) 349, 440, 835, 867
BssT1I CCWWGG 1 cut(s) 623
Bst2UI CCWGG 1 cut(s) 556
Bst4CI ACNGT 5 cut(s) 109, 142, 227, 256, 915
BstAUI TGTACA 1 cut(s) 904
BstDEI CTNAG 3 cut(s) 308, 416, 773
BstF5I GGATG 2 cut(s) 624, 768
BstKTI GATC 4 cut(s) 352, 443, 838, 870
BstMBI GATC 4 cut(s) 349, 440, 835, 867
BstMCI CGRYCG 1 cut(s) 443
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 556
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 13, 554
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 688
BstX2I RGATCY 2 cut(s) 349, 835
BstYI RGATCY 2 cut(s) 349, 835
Bsu36I CCTNAGG 1 cut(s) 773
BsuRI GGCC 2 cut(s) 559, 878
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 624, 768
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 57, 345
BveI ACCTGC 1 cut(s) 667
Cfr13I GGNCC 1 cut(s) 495
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 55, 905
CviAII CATG 2 cut(s) 297, 330
CviJI RGCY 9 cut(s) 36, 77, 83, 209, 554, 559, 714, 857, 878
CviKI_1 RGCY 9 cut(s) 36, 77, 83, 209, 554, 559, 714, 857, 878
CviQI GTAC 2 cut(s) 55, 905
DdeI CTNAG 3 cut(s) 308, 416, 773
DpnI GATC 4 cut(s) 351, 442, 837, 869
DpnII GATC 4 cut(s) 349, 440, 835, 867
DriI GACNNNNNGTC 1 cut(s) 258
Eam1105I GACNNNNNGTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 623
Eco147I AGGCCT 1 cut(s) 878
Eco47I GGWCC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 570
Eco81I CCTNAGG 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 2 cut(s) 300, 333
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 296, 329
FbaI TGATCA 1 cut(s) 867
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 2 cut(s) 631, 755
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 459, 809
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 2 cut(s) 559, 878
HapII CCGG 2 cut(s) 14, 919
HgaI GACGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 300, 333
HincII GTYRAC 3 cut(s) 105, 138, 406
HindII GTYRAC 3 cut(s) 105, 138, 406
HinfI GANTC 5 cut(s) 322, 515, 533, 545, 739
HpaII CCGG 2 cut(s) 14, 919
HphI GGTGA 2 cut(s) 457, 877
Hpy166II GTNNAC 5 cut(s) 55, 105, 138, 406, 907
Hpy188I TCNGA 2 cut(s) 327, 550
Hpy188III TCNNGA 3 cut(s) 383, 488, 643
Hpy8I GTNNAC 5 cut(s) 55, 105, 138, 406, 907
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 5 cut(s) 47, 306, 310, 737, 761
HpyCH4III ACNGT 5 cut(s) 109, 142, 227, 256, 915
HpyCH4V TGCA 5 cut(s) 338, 469, 577, 846, 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 308, 416, 773
Hsp92II CATG 2 cut(s) 300, 333
Ksp22I TGATCA 1 cut(s) 867
Kzo9I GATC 4 cut(s) 349, 440, 835, 867
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 609
MaeI CTAG 2 cut(s) 459, 809
MaeIII GTNAC 3 cut(s) 109, 435, 445
MalI GATC 4 cut(s) 351, 442, 837, 869
MboI GATC 4 cut(s) 349, 440, 835, 867
MboII GAAGA 5 cut(s) 349, 653, 656, 688, 691
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 2 cut(s) 349, 835
MlyI GAGTC 2 cut(s) 509, 539
MmeI TCCRAC 3 cut(s) 173, 240, 327
MnlI CCTC 8 cut(s) 60, 199, 595, 609, 704, 782, 851, 889
MseI TTAA 3 cut(s) 243, 831, 873
MspI CCGG 2 cut(s) 14, 919
MspR9I CCNGG 2 cut(s) 15, 556
MunI CAATTG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 556
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 15
NdeII GATC 4 cut(s) 349, 440, 835, 867
NlaIII CATG 2 cut(s) 300, 333
NlaIV GGNNCC 2 cut(s) 351, 917
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 333
PaqCI CACCTGC 1 cut(s) 667
PceI AGGCCT 1 cut(s) 878
PciI ACATGT 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 939
PfeI GAWTC 3 cut(s) 322, 533, 739
PkrI GCNGC 1 cut(s) 76
Ple19I CGATCG 1 cut(s) 443
PleI GAGTC 2 cut(s) 509, 539
PpsI GAGTC 2 cut(s) 509, 539
PscI ACATGT 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 554
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 554
PspN4I GGNNCC 2 cut(s) 351, 917
PspPI GGNCC 1 cut(s) 495
PsrI GAACNNNNNNTAC 2 cut(s) 468, 500
PsuI RGATCY 2 cut(s) 349, 835
PvuI CGATCG 1 cut(s) 443
RsaI GTAC 2 cut(s) 56, 906
RsaNI GTAC 2 cut(s) 55, 905
SaqAI TTAA 3 cut(s) 243, 831, 873
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 349, 440, 835, 867
Sau96I GGNCC 1 cut(s) 495
SchI GAGTC 2 cut(s) 509, 539
ScrFI CCNGG 2 cut(s) 15, 556
SetI ASST 5 cut(s) 71, 79, 85, 681, 795
SfaNI GCATC 1 cut(s) 609
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SseBI AGGCCT 1 cut(s) 878
SsiI CCGC 1 cut(s) 674
SspI AATATT 1 cut(s) 759
SspMI CTAG 2 cut(s) 459, 809
StuI AGGCCT 1 cut(s) 878
StyD4I CCNGG 2 cut(s) 13, 554
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 5 cut(s) 109, 142, 227, 256, 915
TaqI TCGA 2 cut(s) 501, 924
TatI WGTACW 1 cut(s) 904
TfiI GAWTC 3 cut(s) 322, 533, 739
Tru1I TTAA 3 cut(s) 243, 831, 873
Tru9I TTAA 3 cut(s) 243, 831, 873
TscAI CASTG 2 cut(s) 57, 345
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 602, 927
TspGWI ACGGA 2 cut(s) 464, 539
TspRI CASTG 2 cut(s) 57, 345
VpaK11BI GGWCC 1 cut(s) 495
XapI RAATTY 2 cut(s) 719, 849
XceI RCATGY 1 cut(s) 333
XspI CTAG 2 cut(s) 459, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.