Rh1BG143800

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000491
Physical Location & Seq
Reverse (-)
23782946 .. 23783910
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG143800.1

Sequence Viewer

Length: 804 bp
ATGCTTACATGGGAAGAAGCGCGAGCAATTTTATCTTTAATTTGGGCGATGTCCATATGCCTCTGCAAGTGGGTTCCGCGTGTTCTAATTTGGATGGTTAAGGCTCCAATATTTGTTCCACTCGTTGCAATTCGGTGGGCGTGCAAGGCTTTCCCTGACATCCTTCGGTGGGCATGGAAGGCTTTTCTTGACATCCCTTCAGCAAAGTGGGAACATGTATTTGTAATATCATGTATTGCGGTCTCACTGGATCCTCTGTTCTTTTACATTCCAATCATCGACGAGACAAATAAATGTCTTTCAATGGACAAAAAGTTGAGAACTACAGCTCTCGTCTTCCGATCGCTTACGGATGCCCCTTTAGTACTCCATATTAAAGATCAAATTTGTGATCGGGTCGACTCTGACTACCCCAACTGGTCCGAGTCTGACTCCAACTCCGACTCCGACACCTACTTCGACTCCCATTCTGAGGCAACATCGTCTTCATTGAAGAAGAGGATAGCAAAGAGGATGCAGTGGTTGTCCTTCTCTATTATAGTTAACTGCCTTGCCATTCTTCCCATACCACAGGTGGCTACATTAGTTGGATTTTACCAAATGCGAGCAGGCTCATCGTTCTCTGAAGTTTCTATTAGAAGAACAACGCTCAACGTTTCTCTTGCCCTCCAGTATCTGCCAAGAGTTTGTCAAATCTACCTATCTAGTCAGAAGTTTAGAACAAGCGGAAGATGGATTAAACCTTCGCTGAATTTGTTTCTTTACATCCTTAGTAGCCACGTAAGTTTCATTAATTATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

267

Amino Acids

30.74

Weight (kDa)

9.11

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 399
AccII CGCG 2 cut(s) 22, 79
AciI CCGC 3 cut(s) 77, 239, 726
AclI AACGTT 1 cut(s) 654
AclWI GGATC 2 cut(s) 245, 258
AcsI RAATTY 2 cut(s) 384, 751
AcuI CTGAAG 2 cut(s) 183, 645
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 169, 472
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 2 cut(s) 303, 493
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 2 cut(s) 247, 278
AlwI GGATC 2 cut(s) 245, 258
AlwNI CAGNNNCTG 1 cut(s) 676
ApoI RAATTY 2 cut(s) 384, 751
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AseI ATTAAT 1 cut(s) 792
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 420
AvaII GGWCC 1 cut(s) 420
BamHI GGATCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 328, 477
BccI CCATC 2 cut(s) 88, 726
BcgI CGANNNNNNTGC 2 cut(s) 597, 631
BcoDI GTCTC 2 cut(s) 247, 278
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 3 cut(s) 75, 105, 252
BmsI GCATC 2 cut(s) 343, 504
BpiI GAAGAC 2 cut(s) 328, 477
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpmI CTGGAG 1 cut(s) 653
BsaAI YACGTR 1 cut(s) 781
BsaI GGTCTC 1 cut(s) 247
BsaXI ACNNNNNCTCC 6 cut(s) 422, 428, 446, 452, 458, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 472
Bse1I ACTGG 3 cut(s) 252, 422, 670
BseGI GGATG 6 cut(s) 99, 159, 192, 358, 519, 765
BseLI CCNNNNNNNGG 2 cut(s) 169, 472
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 3 cut(s) 252, 422, 670
Bsh1236I CGCG 2 cut(s) 22, 79
Bsh1285I CGRYCG 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 169, 472
BsmAI GTCTC 2 cut(s) 247, 278
Bso31I GGTCTC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 250, 341, 379, 391
BspACI CCGC 3 cut(s) 77, 239, 726
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 2 cut(s) 22, 79
BspLI GGNNCC 3 cut(s) 75, 105, 252
BspPI GGATC 2 cut(s) 245, 258
BspTNI GGTCTC 1 cut(s) 247
BsrI ACTGG 3 cut(s) 252, 422, 670
BssMI GATC 4 cut(s) 250, 341, 379, 391
Bst6I CTCTTC 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 781
BstC8I GCNNGC 4 cut(s) 24, 142, 606, 610
BstDEI CTNAG 2 cut(s) 471, 770
BstF5I GGATG 6 cut(s) 99, 159, 192, 358, 519, 765
BstFNI CGCG 2 cut(s) 22, 79
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 4 cut(s) 253, 344, 382, 394
BstMAI GTCTC 2 cut(s) 247, 278
BstMBI GATC 4 cut(s) 250, 341, 379, 391
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 2 cut(s) 146, 179
BstNSI RCATGY 1 cut(s) 218
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 2 cut(s) 22, 79
BstV2I GAAGAC 2 cut(s) 328, 477
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 6 cut(s) 99, 159, 192, 358, 519, 765
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 245, 524
Cac8I GCNNGC 4 cut(s) 24, 142, 606, 610
CaiI CAGNNNCTG 1 cut(s) 676
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 365
CviAII CATG 4 cut(s) 9, 174, 215, 231
CviJI RGCY 7 cut(s) 104, 149, 182, 329, 578, 612, 777
CviKI_1 RGCY 7 cut(s) 104, 149, 182, 329, 578, 612, 777
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 2 cut(s) 471, 770
DpnI GATC 4 cut(s) 252, 343, 381, 393
DpnII GATC 4 cut(s) 250, 341, 379, 391
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 183, 645
FaeI CATG 4 cut(s) 12, 177, 218, 234
FatI CATG 4 cut(s) 8, 173, 214, 230
FauNDI CATATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 399
FokI GGATG 6 cut(s) 106, 146, 179, 365, 526, 752
FspBI CTAG 1 cut(s) 705
GlaI GCGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 653
HhaI GCGC 1 cut(s) 22
Hin1II CATG 4 cut(s) 12, 177, 218, 234
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 2 cut(s) 400, 544
HindII GTYRAC 2 cut(s) 400, 544
HinfI GANTC 5 cut(s) 401, 425, 431, 443, 461
HpaI GTTAAC 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 400, 544
Hpy188I TCNGA 9 cut(s) 341, 406, 424, 430, 442, 448, 472, 625, 711
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 400, 544
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 5 cut(s) 172, 173, 207, 538, 753
HpyCH4IV ACGT 2 cut(s) 654, 780
HpyCH4V TGCA 4 cut(s) 66, 128, 144, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 179
HpyF3I CTNAG 2 cut(s) 471, 770
HpySE526I ACGT 2 cut(s) 654, 780
Hsp92II CATG 4 cut(s) 12, 177, 218, 234
HspAI GCGC 1 cut(s) 20
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 4 cut(s) 250, 341, 379, 391
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 168, 233, 403, 557, 594, 683
LweI GCATC 2 cut(s) 343, 504
MaeI CTAG 1 cut(s) 705
MaeII ACGT 2 cut(s) 654, 780
MalI GATC 4 cut(s) 252, 343, 381, 393
MboI GATC 4 cut(s) 250, 341, 379, 391
MboII GAAGA 8 cut(s) 26, 328, 477, 505, 508, 551, 651, 741
MflI RGATCY 1 cut(s) 250
MluCI AATT 7 cut(s) 27, 39, 87, 129, 384, 751, 793
MlyI GAGTC 5 cut(s) 395, 425, 434, 437, 455
MmeI TCCRAC 4 cut(s) 459, 465, 471, 568
MnlI CCTC 6 cut(s) 71, 264, 466, 492, 504, 677
MseI TTAA 6 cut(s) 38, 99, 375, 543, 738, 792
MvnI CGCG 2 cut(s) 22, 79
MwoI GCNNNNNNNGC 2 cut(s) 146, 179
NdeI CATATG 1 cut(s) 56
NdeII GATC 4 cut(s) 250, 341, 379, 391
NlaIII CATG 4 cut(s) 12, 177, 218, 234
NlaIV GGNNCC 3 cut(s) 75, 105, 252
NspI RCATGY 1 cut(s) 218
PciI ACATGT 1 cut(s) 214
Ple19I CGATCG 1 cut(s) 344
PleI GAGTC 5 cut(s) 395, 425, 433, 437, 455
PpsI GAGTC 5 cut(s) 395, 425, 433, 437, 455
Ppu21I YACGTR 1 cut(s) 781
PscI ACATGT 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 792
Psp1406I AACGTT 1 cut(s) 654
PspN4I GGNNCC 3 cut(s) 75, 105, 252
PspPI GGNCC 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 250
PvuI CGATCG 1 cut(s) 344
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SalI GTCGAC 1 cut(s) 398
SaqAI TTAA 6 cut(s) 38, 99, 375, 543, 738, 792
Sau3AI GATC 4 cut(s) 250, 341, 379, 391
Sau96I GGNCC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 366
SchI GAGTC 5 cut(s) 395, 425, 434, 437, 455
SetI ASST 7 cut(s) 331, 455, 576, 657, 702, 745, 783
SfaNI GCATC 2 cut(s) 343, 504
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 420
Sse9I AATT 7 cut(s) 27, 39, 87, 129, 384, 751, 793
SsiI CCGC 3 cut(s) 77, 239, 726
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 705
TaiI ACGT 2 cut(s) 657, 783
TaqI TCGA 3 cut(s) 279, 399, 459
TasI AATT 7 cut(s) 27, 39, 87, 129, 384, 751, 793
TatI WGTACW 1 cut(s) 364
Tru1I TTAA 6 cut(s) 38, 99, 375, 543, 738, 792
Tru9I TTAA 6 cut(s) 38, 99, 375, 543, 738, 792
TscAI CASTG 2 cut(s) 252, 524
TspDTI ATGAA 2 cut(s) 477, 778
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 2 cut(s) 252, 524
VpaK11BI GGWCC 1 cut(s) 420
VspI ATTAAT 1 cut(s) 792
XapI RAATTY 2 cut(s) 384, 751
XceI RCATGY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 1 cut(s) 705
ZrmI AGTACT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.