Rh5AG366400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000491
Physical Location & Seq
Forward (+)
61892953 .. 61894297
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG366400.1

Sequence Viewer

Length: 684 bp
ATGAAGATAATGATCAAGGAGAAAGAAGTACTAAAGTGGGCATCAAGAAACGGTCTCAGCGAGGAAATAAAGACCAAAATCATGGTGACCATAAAAGTTCATAACGCAGTGGAAAAGAACATAGATGCTGACGTGGATGTGAAGTATCTCTGTGATTATCTGCCCGGGACTATACATAATTCTATAAAGCAGCACATCTGCATACGCAATCTCAAGAAAGTACCCATGCTTGAGAGTATGCTAGAAAACGTGTTTTTACGGATGTGCAACTATATTGTGCCAGTGACATATGCCGCGAATAGCATTGTCCTTCGAGCAGGAGAACCACTTCATTTGATGCTCATCATTGTAGAAGGTGTGATTGCATTGACTGAAACTGACAAGATTAGCAATGCCTCAGTGATCACCAAACGTCTCCAGAGAGGTGATTTTTACGGAGAAGGACTTTTGAGTTGGGCATCGCCCAGCATCTCATTTTCCGGCTCAACTCCGGTCTCAGCCCAAGATGTCAAATGTGAAACAAAAGTTGAAGCGTTTGCACTCACCGCAGATAAGTTCGGAAGTGTAGTCTCCGAATTCAGTATCGAGTGGATGTCCGATTTCTATGATTGCAAAAATTCACCTCTGTTGGAGGATTTGACAATTTTCCAAGACAAGATTTTTGATCAGGTGCGTACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.6

Weight (kDa)

5.67

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 95 - 190 2.7e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 294, 546
AcsI RAATTY 2 cut(s) 575, 616
AfaI GTAC 3 cut(s) 30, 222, 676
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 530
AjiI CACGTC 1 cut(s) 133
Alw26I GTCTC 4 cut(s) 59, 419, 499, 574
Ama87I CYCGRG 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 2 cut(s) 575, 616
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
Asp700I GAANNNNTTC 1 cut(s) 327
AsuC2I CCSGG 2 cut(s) 165, 166
AsuHPI GGTGA 5 cut(s) 97, 397, 437, 535, 612
AvaI CYCGRG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 202
BclI TGATCA 3 cut(s) 12, 402, 664
BcnI CCSGG 2 cut(s) 165, 166
BcoDI GTCTC 4 cut(s) 59, 419, 499, 574
BfaI CTAG 1 cut(s) 242
BisI GCNGC 2 cut(s) 191, 294
BlsI GCNGC 2 cut(s) 192, 295
BmcAI AGTACT 1 cut(s) 30
Bme1390I CCNGG 2 cut(s) 165, 166
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 133
BmrFI CCNGG 2 cut(s) 165, 166
BmsI GCATC 5 cut(s) 50, 115, 327, 467, 477
BpmI CTGGAG 1 cut(s) 401
BpuEI CTTGAG 2 cut(s) 197, 251
BpuMI CCSGG 2 cut(s) 165, 166
BsaBI GATNNNNATC 2 cut(s) 11, 341
BsaI GGTCTC 2 cut(s) 59, 499
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 397
Bse8I GATNNNNATC 2 cut(s) 11, 341
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 3 cut(s) 142, 267, 597
BseJI GATNNNNATC 2 cut(s) 11, 341
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 3 cut(s) 70, 411, 510
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 3 cut(s) 165, 480, 491
BslFI GGGAC 1 cut(s) 181
BsmAI GTCTC 4 cut(s) 59, 419, 499, 574
BsmBI CGTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 181
Bso31I GGTCTC 2 cut(s) 59, 499
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 3 cut(s) 12, 402, 664
BspACI CCGC 2 cut(s) 294, 546
BspCNI CTCAG 3 cut(s) 69, 410, 509
BspFNI CGCG 1 cut(s) 296
BspTNI GGTCTC 2 cut(s) 59, 499
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 12, 402, 664
Bst4CI ACNGT 1 cut(s) 53
BstDEI CTNAG 3 cut(s) 56, 397, 496
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 3 cut(s) 142, 267, 597
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 3 cut(s) 15, 405, 667
BstMAI GTCTC 4 cut(s) 59, 419, 499, 574
BstMBI GATC 3 cut(s) 12, 402, 664
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 163, 164
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 444
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 3 cut(s) 142, 267, 597
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 3 cut(s) 114, 288, 405
Cfr9I CCCGGG 1 cut(s) 164
Csp6I GTAC 3 cut(s) 29, 221, 675
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 2 cut(s) 82, 226
CviJI RGCY 2 cut(s) 483, 500
CviKI_1 RGCY 2 cut(s) 483, 500
CviQI GTAC 3 cut(s) 29, 221, 675
DdeI CTNAG 3 cut(s) 56, 397, 496
DpnI GATC 3 cut(s) 14, 404, 666
DpnII GATC 3 cut(s) 12, 402, 664
Eco31I GGTCTC 2 cut(s) 59, 499
Eco88I CYCGRG 1 cut(s) 164
Eco91I GGTNACC 1 cut(s) 85
EcoO65I GGTNACC 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 575
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 2 cut(s) 85, 229
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 81, 225
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 3 cut(s) 12, 402, 664
Fnu4HI GCNGC 2 cut(s) 191, 294
FokI GGATG 3 cut(s) 149, 274, 604
Fsp4HI GCNGC 2 cut(s) 191, 294
FspBI CTAG 1 cut(s) 242
GluI GCNGC 2 cut(s) 191, 294
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 401
HapII CCGG 3 cut(s) 165, 480, 491
Hin1II CATG 2 cut(s) 85, 229
HpaII CCGG 3 cut(s) 165, 480, 491
HphI GGTGA 5 cut(s) 97, 397, 437, 535, 612
Hpy188I TCNGA 3 cut(s) 560, 574, 598
Hpy188III TCNNGA 3 cut(s) 45, 214, 418
HpyAV CCTTC 3 cut(s) 320, 347, 434
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 3 cut(s) 132, 249, 412
HpyCH4V TGCA 5 cut(s) 201, 267, 365, 539, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 3 cut(s) 56, 397, 496
HpySE526I ACGT 3 cut(s) 132, 249, 412
Hsp92II CATG 2 cut(s) 85, 229
Ksp22I TGATCA 3 cut(s) 12, 402, 664
Kzo9I GATC 3 cut(s) 12, 402, 664
LpnPI CCDG 8 cut(s) 178, 294, 303, 431, 478, 493, 504, 653
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 5 cut(s) 50, 115, 327, 467, 477
MaeI CTAG 1 cut(s) 242
MaeII ACGT 3 cut(s) 132, 249, 412
MaeIII GTNAC 2 cut(s) 85, 283
MalI GATC 3 cut(s) 14, 404, 666
MboI GATC 3 cut(s) 12, 402, 664
MboII GAAGA 1 cut(s) 16
MluCI AATT 4 cut(s) 178, 575, 616, 642
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 5 cut(s) 55, 406, 416, 625, 633
MroXI GAANNNNTTC 1 cut(s) 327
MspI CCGG 3 cut(s) 165, 480, 491
MspR9I CCNGG 2 cut(s) 165, 166
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 545
NciI CCSGG 2 cut(s) 165, 166
NdeI CATATG 1 cut(s) 289
NdeII GATC 3 cut(s) 12, 402, 664
NlaIII CATG 2 cut(s) 85, 229
NmuCI GTSAC 2 cut(s) 85, 283
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 192, 295
PspEI GGTNACC 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 464
RsaI GTAC 3 cut(s) 30, 222, 676
RsaNI GTAC 3 cut(s) 29, 221, 675
SatI GCNGC 2 cut(s) 191, 294
Sau3AI GATC 3 cut(s) 12, 402, 664
ScaI AGTACT 1 cut(s) 30
ScrFI CCNGG 2 cut(s) 165, 166
SetI ASST 7 cut(s) 135, 252, 358, 415, 427, 625, 672
SfaNI GCATC 5 cut(s) 50, 115, 327, 467, 477
SmaI CCCGGG 1 cut(s) 166
SmlI CTYRAG 2 cut(s) 212, 230
SmoI CTYRAG 2 cut(s) 212, 230
Sse9I AATT 4 cut(s) 178, 575, 616, 642
SsiI CCGC 2 cut(s) 294, 546
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 163, 164
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 3 cut(s) 135, 252, 415
TaqI TCGA 2 cut(s) 313, 585
TasI AATT 4 cut(s) 178, 575, 616, 642
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 296
TscAI CASTG 3 cut(s) 114, 288, 405
TseFI GTSAC 2 cut(s) 85, 283
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 2 cut(s) 85, 283
TspDTI ATGAA 3 cut(s) 17, 89, 320
TspGWI ACGGA 2 cut(s) 274, 450
TspMI CCCGGG 1 cut(s) 164
TspRI CASTG 3 cut(s) 114, 288, 405
XapI RAATTY 2 cut(s) 575, 616
XmaI CCCGGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 242
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.