RLG00000032473

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000491
Physical Location & Seq
Forward (+)
15602210 .. 15607225
5016 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032473

Sequence Viewer

Length: 1281 bp
ATGTATTTACAGATACCCATTCTTCGAAAATTGGATGAACAAGACTTGGAAGCAGCGCTTATTAGTGTGATTGGTAACCCCATTGAATATAGAATCAACATCAGAAGGGAAGACCGCTACATTACTCGAGCCGGACAAGAACTTGATATTATGTACTTGATTATAGACGGCGTAATTGAATGCAAGGATGCTGAAACAATGAGCACCCAAATTAGGCGTCGCTACGATTGTTGTGGAGAAGAAGTTCTGCGTTGGGCAATATTGAACTATAAGAAAGAGCGAGAGCATCGCGATCCTCTTCCTAATTCAAAAGTAGATGTCAAATGTCAAACGAAAACAGAAACTTTTCGGTTCACTGCTGATGACTTGATCAAAATTCTCGAAAAGTTAAACAATTCAGAGCAGTTGGAGGCGTTGGCCCTCGATAGCAGCACCGAACAACGGATCGAGGACTGGCTGTTAAGAAATCGGTTCCCTGAGGATCTGAAGGCAAACATCATGAATTTCCTAGACAAAAACAACCGGCTAGGGGAAGAAAACACAGATGCTGATGTTGATGTGGATTTTCTATTCGGCATTCTTCCAAATAATATCAAATCATCCATAAAACGCCATCTCGGCATGAATGCCCTAAAGAAACCAGTGGTGTACAAGATGAATACGTATGTTGTTAGAGCGGGAGAACCACTTGGTTTTATGATCTTCATTCTACGAGGCGAAATTATAATGACTGACGAAACTAGCAGCAACGCCACAACAACACGTTCCTCAGAGATCAGCGAATCACGTGATGACAAGATCCTTGGGGGAGGTGATTTTTATGGAGAACAACTTCTGAGTTGGGCATCACCTAACAACATTTCTTCATCTGACAATCCCGTCATCTCAACTAGAGATGTCAAATGTCAAACAAAAGTGGAAGCCTTGATTCTCAAGGCAGAAGACTTGAGAAGTGCAGTCTCCAAATGCGGATCACAGTGGAATTTCAACGATAGTATGAACTCTCAGCACTTAGTCGGGTATGGACAAGATACGGTTGCTGATACAGCTGCATCTGCATCAACGTCCCGTAATAATGAGCAGACTATCCAGCTTCATCAGGGCCATGACATGCTTCTTGAGCAGCTGATTCTAATTCGAGAGACTGTCTTCCAGCTTCGCAATGATATGTCTATTCAGGGACGGAGATTAGATGATCAGGGACGAAGATTAGATGAGATGGCTACATTTTTAGCCAAATTGGGATATAGAGAAGCATCTTCTCCTCCTCCAGCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

48.57

Weight (kDa)

5.11

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
AasI GACNNNNNNGTC 1 cut(s) 878
AccBSI CCGCTC 1 cut(s) 677
AccII CGCG 1 cut(s) 291
AciI CCGC 3 cut(s) 115, 677, 969
AclWI GGATC 5 cut(s) 287, 452, 489, 793, 979
AcsI RAATTY 3 cut(s) 375, 502, 982
AcuI CTGAAG 1 cut(s) 506
AcvI CACGTG 1 cut(s) 788
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 2 cut(s) 155, 650
AfeI AGCGCT 1 cut(s) 57
AfiI CCNNNNNNNGG 3 cut(s) 213, 441, 529
AflIII ACRYGT 1 cut(s) 761
AgsI TTSAA 5 cut(s) 86, 179, 265, 309, 988
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 4 cut(s) 1049, 1093, 1126, 1156
AluI AGCT 4 cut(s) 1049, 1093, 1126, 1156
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 2 cut(s) 964, 1136
AlwI GGATC 5 cut(s) 287, 452, 489, 793, 979
AlwNI CAGNNNCTG 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 126
Aor51HI AGCGCT 1 cut(s) 57
AoxI GGCC 2 cut(s) 417, 1102
ApeKI GCWGC 5 cut(s) 53, 429, 744, 1049, 1123
ApoI RAATTY 3 cut(s) 375, 502, 982
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
Asp700I GAANNNNTTC 3 cut(s) 243, 345, 831
AspLEI GCGC 2 cut(s) 58, 1276
AspS9I GGNCC 2 cut(s) 418, 1102
AsuHPI GGTGA 2 cut(s) 824, 840
AsuII TTCGAA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 126
AxyI CCTNAGG 1 cut(s) 477
BbrPI CACGTG 1 cut(s) 788
BbsI GAAGAC 3 cut(s) 117, 948, 1141
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 5 cut(s) 65, 441, 756, 1036, 1135
BccI CCATC 2 cut(s) 621, 1213
BceAI ACGGC 1 cut(s) 184
BclI TGATCA 2 cut(s) 369, 1195
BcoDI GTCTC 2 cut(s) 964, 1136
BfaI CTAG 4 cut(s) 509, 527, 741, 891
BfoI RGCGCY 2 cut(s) 59, 1277
BglI GCCNNNNNGGC 1 cut(s) 618
BisI GCNGC 5 cut(s) 54, 430, 745, 1050, 1124
BlsI GCNGC 5 cut(s) 55, 431, 746, 1051, 1125
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 418, 1102
BmiI GGNNCC 1 cut(s) 473
BmsI GCATC 7 cut(s) 178, 295, 535, 854, 1061, 1067, 1265
BpiI GAAGAC 3 cut(s) 117, 948, 1141
BpmI CTGGAG 1 cut(s) 1254
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 3 cut(s) 917, 967, 1139
BsaAI YACGTR 2 cut(s) 663, 788
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 802
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 441, 529
Bse118I RCCGGY 1 cut(s) 522
Bse1I ACTGG 2 cut(s) 458, 641
Bse21I CCTNAGG 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 1168
BseDI CCNNGG 1 cut(s) 802
BseGI GGATG 3 cut(s) 40, 193, 599
BseLI CCNNNNNNNGG 3 cut(s) 213, 441, 529
BseMI GCAATG 1 cut(s) 1168
BseMII CTCAG 4 cut(s) 468, 783, 827, 1019
BseNI ACTGG 2 cut(s) 458, 641
BseRI GAGGAG 2 cut(s) 1254, 1257
BseXI GCAGC 5 cut(s) 65, 441, 756, 1036, 1135
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 419, 1104
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 132, 523
BslFI GGGAC 3 cut(s) 1051, 1194, 1215
BslI CCNNNNNNNGG 3 cut(s) 213, 441, 529
BsmAI GTCTC 2 cut(s) 964, 1136
BsmFI GGGAC 3 cut(s) 1051, 1194, 1215
BsmI GAATGC 3 cut(s) 185, 576, 631
BsnI GGCC 2 cut(s) 419, 1104
BsoBI CYCGRG 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 3 cut(s) 115, 677, 969
BspANI GGCC 2 cut(s) 419, 1104
BspCNI CTCAG 4 cut(s) 469, 782, 828, 1018
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 473
BspPI GGATC 5 cut(s) 287, 452, 489, 793, 979
BspT104I TTCGAA 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 1168
BsrFI RCCGGY 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 2 cut(s) 458, 641
BssAI RCCGGY 1 cut(s) 522
BssECI CCNNGG 1 cut(s) 802
BssMI GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 802
Bst4CI ACNGT 3 cut(s) 978, 1036, 1147
Bst6I CTCTTC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 648
BstBAI YACGTR 2 cut(s) 663, 788
BstBI TTCGAA 1 cut(s) 25
BstDEI CTNAG 5 cut(s) 477, 769, 836, 1005, 1012
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 3 cut(s) 40, 193, 599
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 2 cut(s) 59, 1277
BstHHI GCGC 2 cut(s) 58, 1276
BstKTI GATC 9 cut(s) 295, 372, 447, 484, 702, 777, 801, 974, 1198
BstMAI GTCTC 2 cut(s) 964, 1136
BstMBI GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
BstMWI GCNNNNNNNGC 4 cut(s) 618, 1046, 1055, 1120
BstNSI RCATGY 1 cut(s) 1114
BstPI GGTNACC 1 cut(s) 74
BstSNI TACGTA 1 cut(s) 663
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 5 cut(s) 65, 441, 756, 1036, 1135
BstV2I GAAGAC 3 cut(s) 117, 948, 1141
BstX2I RGATCY 2 cut(s) 481, 798
BstYI RGATCY 2 cut(s) 481, 798
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 419, 1104
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 3 cut(s) 40, 193, 599
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 354, 648, 983
BtuMI TCGCGA 1 cut(s) 291
CaiI CAGNNNCTG 1 cut(s) 548
CciI TCATGA 1 cut(s) 498
CfoI GCGC 2 cut(s) 58, 1276
Cfr10I RCCGGY 1 cut(s) 522
Cfr13I GGNCC 2 cut(s) 418, 1102
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 154, 649
CviAII CATG 4 cut(s) 499, 622, 1106, 1111
CviQI GTAC 2 cut(s) 154, 649
DdeI CTNAG 5 cut(s) 477, 769, 836, 1005, 1012
DpnI GATC 9 cut(s) 294, 371, 446, 483, 701, 776, 800, 973, 1197
DpnII GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
DrdI GACNNNNNNGTC 1 cut(s) 878
DseDI GACNNNNNNGTC 1 cut(s) 878
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco105I TACGTA 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 802
Eco47III AGCGCT 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 506
Eco72I CACGTG 1 cut(s) 788
Eco81I CCTNAGG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 4 cut(s) 502, 625, 1109, 1114
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 3 cut(s) 1051, 1194, 1215
FatI CATG 4 cut(s) 498, 621, 1105, 1110
FauI CCCGC 1 cut(s) 670
FbaI TGATCA 2 cut(s) 369, 1195
Fnu4HI GCNGC 5 cut(s) 54, 430, 745, 1050, 1124
FokI GGATG 3 cut(s) 47, 200, 586
Fsp4HI GCNGC 5 cut(s) 54, 430, 745, 1050, 1124
FspBI CTAG 4 cut(s) 509, 527, 741, 891
GlaI GCGC 2 cut(s) 57, 1275
GluI GCNGC 5 cut(s) 54, 430, 745, 1050, 1124
GsuI CTGGAG 1 cut(s) 1254
HaeII RGCGCY 2 cut(s) 59, 1277
HaeIII GGCC 2 cut(s) 419, 1104
HapII CCGG 2 cut(s) 132, 523
HgaI GACGC 1 cut(s) 206
HhaI GCGC 2 cut(s) 58, 1276
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 4 cut(s) 502, 625, 1109, 1114
Hin6I GCGC 2 cut(s) 56, 1274
HinP1I GCGC 2 cut(s) 56, 1274
HinfI GANTC 4 cut(s) 93, 782, 928, 1129
HpaII CCGG 2 cut(s) 132, 523
HphI GGTGA 2 cut(s) 824, 840
Hpy166II GTNNAC 2 cut(s) 354, 649
Hpy188I TCNGA 6 cut(s) 104, 400, 486, 772, 837, 871
Hpy188III TCNNGA 5 cut(s) 290, 380, 499, 1118, 1139
Hpy8I GTNNAC 2 cut(s) 354, 649
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 99, 481
HpyCH4III ACNGT 3 cut(s) 978, 1036, 1147
HpyCH4IV ACGT 4 cut(s) 662, 763, 787, 1064
HpyCH4V TGCA 4 cut(s) 183, 956, 1052, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 618, 1046, 1055, 1120
HpyF3I CTNAG 5 cut(s) 477, 769, 836, 1005, 1012
HpySE526I ACGT 4 cut(s) 662, 763, 787, 1064
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 4 cut(s) 502, 625, 1109, 1114
HspAI GCGC 2 cut(s) 56, 1274
Ksp22I TGATCA 2 cut(s) 369, 1195
Kzo9I GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
Lsp1109I GCAGC 5 cut(s) 65, 441, 756, 1036, 1135
LweI GCATC 7 cut(s) 178, 295, 535, 854, 1061, 1067, 1265
MaeI CTAG 4 cut(s) 509, 527, 741, 891
MaeII ACGT 4 cut(s) 662, 763, 787, 1064
MaeIII GTNAC 1 cut(s) 74
MalI GATC 9 cut(s) 294, 371, 446, 483, 701, 776, 800, 973, 1197
MbiI CCGCTC 1 cut(s) 677
MboI GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
MflI RGATCY 2 cut(s) 481, 798
MhlI GDGCHC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 387
MroXI GAANNNNTTC 3 cut(s) 243, 345, 831
MseI TTAA 2 cut(s) 389, 461
MspA1I CMGCKG 2 cut(s) 1049, 1126
MspI CCGG 2 cut(s) 132, 523
Mva1269I GAATGC 3 cut(s) 185, 576, 631
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 618, 1046, 1055, 1120
NdeII GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
NlaIII CATG 4 cut(s) 502, 625, 1109, 1114
NlaIV GGNNCC 1 cut(s) 473
NmeAIII GCCGAG 1 cut(s) 597
NruI TCGCGA 1 cut(s) 291
NspI RCATGY 1 cut(s) 1114
NspV TTCGAA 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 126
PagI TCATGA 1 cut(s) 498
PctI GAATGC 3 cut(s) 185, 576, 631
PdmI GAANNNNTTC 3 cut(s) 243, 345, 831
PfeI GAWTC 4 cut(s) 93, 782, 928, 1129
PkrI GCNGC 5 cut(s) 55, 431, 746, 1051, 1125
PmaCI CACGTG 1 cut(s) 788
PmlI CACGTG 1 cut(s) 788
Ppu21I YACGTR 2 cut(s) 663, 788
PsiI TTATAA 1 cut(s) 725
PspCI CACGTG 1 cut(s) 788
PspEI GGTNACC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 473
PspPI GGNCC 2 cut(s) 418, 1102
PspXI VCTCGAGB 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 2 cut(s) 481, 798
PvuII CAGCTG 2 cut(s) 1049, 1126
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 2 cut(s) 155, 650
RsaNI GTAC 2 cut(s) 154, 649
SaqAI TTAA 2 cut(s) 389, 461
SatI GCNGC 5 cut(s) 54, 430, 745, 1050, 1124
Sau3AI GATC 9 cut(s) 292, 369, 444, 481, 699, 774, 798, 971, 1195
Sau96I GGNCC 2 cut(s) 418, 1102
SduI GDGCHC 1 cut(s) 206
SfaNI GCATC 7 cut(s) 178, 295, 535, 854, 1061, 1067, 1265
Sfr274I CTCGAG 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 4 cut(s) 126, 932, 946, 1118
SmoI CTYRAG 4 cut(s) 126, 932, 946, 1118
SnaBI TACGTA 1 cut(s) 663
SsiI CCGC 3 cut(s) 115, 677, 969
SspI AATATT 1 cut(s) 261
SspMI CTAG 4 cut(s) 509, 527, 741, 891
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 3 cut(s) 978, 1036, 1147
TaiI ACGT 4 cut(s) 665, 766, 790, 1067
TaqI TCGA 6 cut(s) 25, 127, 381, 423, 447, 1138
TatI WGTACW 2 cut(s) 153, 648
TfiI GAWTC 4 cut(s) 93, 782, 928, 1129
Tru1I TTAA 2 cut(s) 389, 461
Tru9I TTAA 2 cut(s) 389, 461
TscAI CASTG 3 cut(s) 361, 648, 983
TseI GCWGC 5 cut(s) 53, 429, 744, 1049, 1123
TspDTI ATGAA 8 cut(s) 51, 515, 638, 671, 694, 855, 1013, 1085
TspGWI ACGGA 2 cut(s) 457, 1198
TspRI CASTG 3 cut(s) 361, 648, 983
XapI RAATTY 3 cut(s) 375, 502, 982
XceI RCATGY 1 cut(s) 1114
XhoI CTCGAG 1 cut(s) 126
XmnI GAANNNNTTC 3 cut(s) 243, 345, 831
XspI CTAG 4 cut(s) 509, 527, 741, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.