RchiOBHm_Chr5g0019791

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000491
Physical Location & Seq
Forward (+)
14206464 .. 14209001
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29992

Sequence Viewer

Length: 906 bp
ATGACATGGGCATTGATCGGAATTCTAGGTCCATTCGTGTTCGTTGCAATAAAGTGGAAAAGGGTATTCATACTATCATGTGTTGCAGTGTCATTTGATTCTTTGTTCCTTTACATTCCCATCATCGATCAGGAAAACAAGTGCCTTGACACGGACAAGACGTTGAGGAATGTAGCGCTTGTCCTCAGATCACTTACAGACATCGCTTTCATATTCCATATTATTGCTCTGATCAATGATTTCATGGACGAGGGCCCCAAGTGGGATGACCACGCGTCAGCGTCACGTTTGCCAAGAAAACTAAAGCTTGTGCGAGAGGTCATAGCTAAGAAGATGCCGTGGTTATCTATCCGCATCGTAGTCAACTTTCTAGCTATTCTTCCCATCCCACAGGTGGCAATAGTAGTTGGCTCTTTCAGATTGGGAGGCTCTAAACATTTTCTCAAACAAACAATTATAAACGTCTTTCTTGTCTTCCAATATTTCCTGAGGATTTTCCAAATGTTCTTATCCATTAAGAAGATCGGTGACACGGTTGGAAAATTGGTCAAAGGTTCATTCTACTTTCTCATGTACATCATTGCTGGCTGTGTCTTTGCAGCCTTTTGGTATTTCTTTTCTATTCAACGAGAAACATCCTGTTGGGACCAAGCATGTCAAACGATTGCAGGATGCATGCCTATCTATGATTGCGGTCATAGTACTTCATTGAATAGCACATTCCTAAACAAATTATGCCCTATAGAATCTCCAAATGCAACGCCCTTTGATTTTGGAATGTTTCATGATATTCTTAAATCTGGTATTACAGAATCTACAAATTTTTTCACAAAATTCTTTTACTCTTTCTGGTGGGGCCTCAAAAATTTAAGGTACGCATATAACTGTGTGACAGCTGTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

34.54

Weight (kDa)

9.17

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AccII CGCG 1 cut(s) 275
AciI CCGC 2 cut(s) 352, 693
AcsI RAATTY 4 cut(s) 21, 820, 833, 865
AfaI GTAC 3 cut(s) 575, 703, 875
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 151, 262, 394
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 626, 712
AhdI GACNNNNNGTC 1 cut(s) 274
AluBI AGCT 4 cut(s) 307, 326, 374, 896
AluI AGCT 4 cut(s) 307, 326, 374, 896
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 2 cut(s) 253, 856
ApaI GGGCCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 4 cut(s) 21, 820, 833, 865
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 5 cut(s) 29, 253, 254, 646, 856
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 2 cut(s) 29, 646
AxyI CCTNAGG 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 611
BccI CCATC 2 cut(s) 128, 392
BceAI ACGGC 1 cut(s) 322
BclI TGATCA 1 cut(s) 231
BfaI CTAG 2 cut(s) 26, 371
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
BmcAI AGTACT 1 cut(s) 703
Bme18I GGWCC 2 cut(s) 29, 646
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 5 cut(s) 29, 253, 254, 646, 856
BmiI GGNNCC 4 cut(s) 255, 256, 647, 857
BmsI GCATC 3 cut(s) 324, 363, 662
BpiI GAAGAC 1 cut(s) 466
Bsa29I ATCGAT 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 262, 394
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 579
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 4 cut(s) 271, 384, 635, 677
BseLI CCNNNNNNNGG 3 cut(s) 151, 262, 394
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 2 cut(s) 199, 479
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 2 cut(s) 255, 858
BshVI ATCGAT 1 cut(s) 126
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 3 cut(s) 151, 262, 394
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 2 cut(s) 255, 858
Bsp120I GGGCCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 5 cut(s) 15, 127, 188, 231, 522
BspACI CCGC 2 cut(s) 352, 693
BspANI GGCC 2 cut(s) 255, 858
BspCNI CTCAG 2 cut(s) 198, 480
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 1 cut(s) 275
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 4 cut(s) 255, 256, 647, 857
BsrDI GCAATG 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 573
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 5 cut(s) 15, 127, 188, 231, 522
Bst4CI ACNGT 2 cut(s) 535, 887
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 586, 677
BstDEI CTNAG 3 cut(s) 185, 327, 488
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 4 cut(s) 271, 384, 635, 677
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 18, 130, 191, 234, 525
BstMBI GATC 5 cut(s) 15, 127, 188, 231, 522
BstNSI RCATGY 2 cut(s) 657, 679
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 611
BstV2I GAAGAC 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 2 cut(s) 255, 858
BsuTUI ATCGAT 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 338
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 4 cut(s) 271, 384, 635, 677
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 586, 677
CciI TCATGA 1 cut(s) 784
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 5 cut(s) 29, 253, 254, 646, 856
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 2 cut(s) 264, 270
Csp6I GTAC 3 cut(s) 574, 702, 874
CviAII CATG 7 cut(s) 6, 78, 244, 571, 654, 676, 785
CviQI GTAC 3 cut(s) 574, 702, 874
DdeI CTNAG 3 cut(s) 185, 327, 488
DpnI GATC 5 cut(s) 17, 129, 190, 233, 524
DpnII GATC 5 cut(s) 15, 127, 188, 231, 522
DriI GACNNNNNGTC 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 29, 646
Eco47III AGCGCT 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 488
EcoO109I RGGNCCY 3 cut(s) 253, 254, 856
EcoRI GAATTC 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 677
EcoT38I GRGCYC 1 cut(s) 257
FaeI CATG 7 cut(s) 9, 81, 247, 574, 657, 679, 788
FaqI GGGAC 1 cut(s) 659
FatI CATG 7 cut(s) 5, 77, 243, 570, 653, 675, 784
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 4 cut(s) 278, 371, 622, 684
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 2 cut(s) 26, 371
GlaI GCGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 600
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 2 cut(s) 255, 858
HgaI GACGC 2 cut(s) 264, 270
HhaI GCGC 1 cut(s) 178
Hin1II CATG 7 cut(s) 9, 81, 247, 574, 657, 679, 788
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 98, 746, 812
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 20, 188, 231, 419
Hpy188III TCNNGA 3 cut(s) 131, 487, 785
Hpy8I GTNNAC 1 cut(s) 364
HpyCH4III ACNGT 2 cut(s) 535, 887
HpyCH4IV ACGT 3 cut(s) 161, 286, 462
HpyCH4V TGCA 6 cut(s) 47, 86, 599, 668, 675, 758
HpyF3I CTNAG 3 cut(s) 185, 327, 488
HpySE526I ACGT 3 cut(s) 161, 286, 462
Hsp92II CATG 7 cut(s) 9, 81, 247, 574, 657, 679, 788
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 5 cut(s) 15, 127, 188, 231, 522
LpnPI CCDG 8 cut(s) 116, 377, 500, 570, 652, 654, 786, 835
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 3 cut(s) 324, 363, 662
MaeI CTAG 2 cut(s) 26, 371
MaeII ACGT 3 cut(s) 161, 286, 462
MaeIII GTNAC 3 cut(s) 282, 527, 889
MalI GATC 5 cut(s) 17, 129, 190, 233, 524
MboI GATC 5 cut(s) 15, 127, 188, 231, 522
MboII GAAGA 4 cut(s) 343, 371, 466, 532
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 7 cut(s) 21, 453, 542, 731, 820, 833, 865
MluI ACGCGT 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 7 cut(s) 159, 194, 244, 310, 419, 483, 869
Mph1103I ATGCAT 1 cut(s) 677
MseI TTAA 4 cut(s) 516, 795, 869, 904
MspA1I CMGCKG 1 cut(s) 896
MvnI CGCG 1 cut(s) 275
NdeII GATC 5 cut(s) 15, 127, 188, 231, 522
NlaIII CATG 7 cut(s) 9, 81, 247, 574, 657, 679, 788
NlaIV GGNNCC 4 cut(s) 255, 256, 647, 857
NmuCI GTSAC 3 cut(s) 282, 527, 889
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 2 cut(s) 657, 679
PaeI GCATGC 1 cut(s) 679
PagI TCATGA 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 3 cut(s) 98, 746, 812
PkrI GCNGC 1 cut(s) 601
PsiI TTATAA 1 cut(s) 458
PspN4I GGNNCC 4 cut(s) 255, 256, 647, 857
PspOMI GGGCCC 1 cut(s) 253
PspPI GGNCC 5 cut(s) 29, 253, 254, 646, 856
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 3 cut(s) 575, 703, 875
RsaNI GTAC 3 cut(s) 574, 702, 874
SaqAI TTAA 4 cut(s) 516, 795, 869, 904
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 5 cut(s) 15, 127, 188, 231, 522
Sau96I GGNCC 5 cut(s) 29, 253, 254, 646, 856
ScaI AGTACT 1 cut(s) 703
SduI GDGCHC 1 cut(s) 257
SfaNI GCATC 3 cut(s) 324, 363, 662
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 2 cut(s) 29, 646
SphI GCATGC 1 cut(s) 679
Sse9I AATT 7 cut(s) 21, 453, 542, 731, 820, 833, 865
SsiI CCGC 2 cut(s) 352, 693
SspI AATATT 1 cut(s) 482
SspMI CTAG 2 cut(s) 26, 371
TaaI ACNGT 2 cut(s) 535, 887
TaiI ACGT 3 cut(s) 164, 289, 465
TaqI TCGA 1 cut(s) 126
TasI AATT 7 cut(s) 21, 453, 542, 731, 820, 833, 865
TatI WGTACW 2 cut(s) 573, 701
TfiI GAWTC 3 cut(s) 98, 746, 812
Tru1I TTAA 4 cut(s) 516, 795, 869, 904
Tru9I TTAA 4 cut(s) 516, 795, 869, 904
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 3 cut(s) 282, 527, 889
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 3 cut(s) 282, 527, 889
TspDTI ATGAA 7 cut(s) 58, 199, 232, 546, 696, 773, 890
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 29, 646
XapI RAATTY 4 cut(s) 21, 820, 833, 865
XceI RCATGY 2 cut(s) 657, 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 2 cut(s) 26, 371
ZrmI AGTACT 1 cut(s) 703
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.