Rorug02G0454500

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000491
Physical Location & Seq
Forward (+)
58393125 .. 58393286
162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0454500.1

Sequence Viewer

Length: 162 bp
ATGGATGTCGTTCAAGTTCAACACTGCAAGAAGACAAAGAGAAGCAGGCGTGGCTTCAGTGGCAAATGTGCTGCCCTAGTGAAGGAGCAACGTGCCCGCATTTACATCCTTCGCCGCTGCGCCACCATGCTTCTCTGCTGGTACATTCAAGGAGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

6.23

Weight (kDa)

9.96

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 28 - 46 6.2e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 115
AcuI CTGAAG 1 cut(s) 40
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 3 cut(s) 14, 20, 149
ApeKI GCWGC 2 cut(s) 71, 117
AspLEI GCGC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 58, 104
BfaI CTAG 2 cut(s) 77, 160
BisI GCNGC 3 cut(s) 72, 115, 118
BlsI GCNGC 3 cut(s) 73, 116, 119
BpiI GAAGAC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 10, 105
BseLI CCNNNNNNNGG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 2 cut(s) 58, 104
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 97
BspACI CCGC 2 cut(s) 97, 115
BstC8I GCNNGC 2 cut(s) 47, 97
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 10, 105
BstHHI GCGC 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 51, 60
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 58, 104
BstV2I GAAGAC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 10, 105
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 64
Cac8I GCNNGC 2 cut(s) 47, 97
CfoI GCGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 127
CviJI RGCY 1 cut(s) 54
CviKI_1 RGCY 1 cut(s) 54
CviQI GTAC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 80
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 3 cut(s) 72, 115, 118
FokI GGATG 2 cut(s) 17, 92
Fsp4HI GCNGC 3 cut(s) 72, 115, 118
FspBI CTAG 2 cut(s) 77, 160
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 72, 115, 118
HhaI GCGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HpyAV CCTTC 2 cut(s) 76, 119
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 60
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 2 cut(s) 31, 124
Lsp1109I GCAGC 2 cut(s) 58, 104
MaeI CTAG 2 cut(s) 77, 160
MaeII ACGT 1 cut(s) 91
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 51, 60
NlaIII CATG 1 cut(s) 130
PkrI GCNGC 3 cut(s) 73, 116, 119
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 3 cut(s) 72, 115, 118
SduI GDGCHC 1 cut(s) 97
SetI ASST 1 cut(s) 94
SgeI CNNG 9 cut(s) 26, 40, 58, 62, 89, 104, 108, 139, 151
SsiI CCGC 2 cut(s) 97, 115
SspMI CTAG 2 cut(s) 77, 160
TaiI ACGT 1 cut(s) 94
TauI GCSGC 1 cut(s) 117
TscAI CASTG 2 cut(s) 29, 64
TseI GCWGC 2 cut(s) 71, 117
TspRI CASTG 2 cut(s) 29, 64
XagI CCTNNNNNAGG 1 cut(s) 80
XspI CTAG 2 cut(s) 77, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.