Rh5BG143500

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000491
Physical Location & Seq
Forward (+)
14885630 .. 14886115
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG143500.1

Sequence Viewer

Length: 486 bp
ATGAATACGTATGTTGTTAGAGCGGGAGAACCACTTGGTTTTATGTTCTTCATTCTACGAGGCAAAATTATAATGACTGACGAGACTAGCAGCAATGCCACAACAACACGTTCCTCAGAGATCAGCGAATCACGTGATGACAAGATCCTTCGGGGAGGTGATTTTTATGGAGAACAACTTCTGAGTTGGGCATCACCTAACAACATTTCTTCATCTGACAATCCCGTCATCTCAACTAGAGATGTCAAATGTCAAACAAAAGTGGAAGCCTTGATTCTCAAGGCAGAAGATTTGAGAAGTGCAGTCTCCAAATGCGGATCTCAGCGGAATTTCGACGATAGTATGAATTCTCAGCACTTGGTCGGGTACGGAAAAGATACGGTGGCTGATACAGGTGCATCTGCATCAACGTCCCCTAATAATGAGCAGACTATCCAGCTTCATCAGGGCCATGACATGCTTCTTGAGCAGCTGATTCTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.68

Weight (kDa)

4.99

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AasI GACNNNNNNGTC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 3 cut(s) 23, 315, 325
AclWI GGATC 2 cut(s) 139, 325
AcsI RAATTY 2 cut(s) 328, 346
AcvI CACGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 107
AluBI AGCT 2 cut(s) 439, 472
AluI AGCT 2 cut(s) 439, 472
Alw26I GTCTC 2 cut(s) 77, 310
AlwI GGATC 2 cut(s) 139, 325
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 90, 469
ApoI RAATTY 2 cut(s) 328, 346
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 2 cut(s) 170, 186
BbrPI CACGTG 1 cut(s) 134
BbvI GCAGC 2 cut(s) 102, 481
BcoDI GTCTC 2 cut(s) 77, 310
BfaI CTAG 2 cut(s) 87, 237
BisI GCNGC 2 cut(s) 91, 470
BlsI GCNGC 2 cut(s) 92, 471
BmgT120I GGNCC 1 cut(s) 448
BmsI GCATC 3 cut(s) 200, 407, 413
BpuEI CTTGAG 2 cut(s) 263, 485
BsaAI YACGTR 2 cut(s) 9, 134
Bse3DI GCAATG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 4 cut(s) 129, 173, 335, 365
BseXI GCAGC 2 cut(s) 102, 481
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 1 cut(s) 450
BslFI GGGAC 1 cut(s) 397
BsmAI GTCTC 2 cut(s) 77, 310
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 1 cut(s) 450
Bsp143I GATC 3 cut(s) 120, 144, 317
BspACI CCGC 3 cut(s) 23, 315, 325
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 4 cut(s) 128, 174, 334, 364
BspPI GGATC 2 cut(s) 139, 325
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 3 cut(s) 120, 144, 317
Bst4CI ACNGT 1 cut(s) 382
BstBAI YACGTR 2 cut(s) 9, 134
BstDEI CTNAG 4 cut(s) 115, 182, 321, 351
BstKTI GATC 3 cut(s) 123, 147, 320
BstMAI GTCTC 2 cut(s) 77, 310
BstMBI GATC 3 cut(s) 120, 144, 317
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNSI RCATGY 1 cut(s) 460
BstSNI TACGTA 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 102, 481
BstX2I RGATCY 2 cut(s) 144, 317
BstYI RGATCY 2 cut(s) 144, 317
BsuRI GGCC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 452, 457
CviJI RGCY 5 cut(s) 269, 386, 439, 450, 472
CviKI_1 RGCY 5 cut(s) 269, 386, 439, 450, 472
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 4 cut(s) 115, 182, 321, 351
DpnI GATC 3 cut(s) 122, 146, 319
DpnII GATC 3 cut(s) 120, 144, 317
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eco105I TACGTA 1 cut(s) 9
Eco72I CACGTG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 346
FaeI CATG 2 cut(s) 455, 460
FaiI YATR 7 cut(s) 12, 44, 71, 168, 344, 453, 458
FaqI GGGAC 1 cut(s) 397
FatI CATG 2 cut(s) 451, 456
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 91, 470
Fsp4HI GCNGC 2 cut(s) 91, 470
FspBI CTAG 2 cut(s) 87, 237
GluI GCNGC 2 cut(s) 91, 470
HaeIII GGCC 1 cut(s) 450
Hin1II CATG 2 cut(s) 455, 460
HinfI GANTC 3 cut(s) 128, 274, 475
HphI GGTGA 2 cut(s) 170, 186
Hpy188I TCNGA 3 cut(s) 118, 183, 217
Hpy188III TCNNGA 1 cut(s) 464
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 4 cut(s) 8, 109, 133, 410
HpyCH4V TGCA 3 cut(s) 302, 398, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 4 cut(s) 115, 182, 321, 351
HpySE526I ACGT 4 cut(s) 8, 109, 133, 410
Hsp92II CATG 2 cut(s) 455, 460
Kzo9I GATC 3 cut(s) 120, 144, 317
LpnPI CCDG 3 cut(s) 378, 431, 449
Lsp1109I GCAGC 2 cut(s) 102, 481
LweI GCATC 3 cut(s) 200, 407, 413
MaeI CTAG 2 cut(s) 87, 237
MaeII ACGT 4 cut(s) 8, 109, 133, 410
MalI GATC 3 cut(s) 122, 146, 319
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 120, 144, 317
MboII GAAGA 3 cut(s) 40, 201, 299
MflI RGATCY 2 cut(s) 144, 317
MluCI AATT 4 cut(s) 66, 328, 346, 480
MnlI CCTC 3 cut(s) 53, 124, 149
MroXI GAANNNNTTC 1 cut(s) 177
MspA1I CMGCKG 2 cut(s) 325, 472
MwoI GCNNNNNNNGC 1 cut(s) 466
NdeII GATC 3 cut(s) 120, 144, 317
NlaIII CATG 2 cut(s) 455, 460
NspI RCATGY 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 128, 274, 475
PkrI GCNGC 2 cut(s) 92, 471
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 2 cut(s) 9, 134
PsiI TTATAA 1 cut(s) 71
PspCI CACGTG 1 cut(s) 134
PspPI GGNCC 1 cut(s) 448
PsuI RGATCY 2 cut(s) 144, 317
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SatI GCNGC 2 cut(s) 91, 470
Sau3AI GATC 3 cut(s) 120, 144, 317
Sau96I GGNCC 1 cut(s) 448
SetI ASST 9 cut(s) 11, 112, 136, 160, 199, 397, 413, 441, 474
SfaNI GCATC 3 cut(s) 200, 407, 413
SmlI CTYRAG 2 cut(s) 278, 464
SmoI CTYRAG 2 cut(s) 278, 464
SnaBI TACGTA 1 cut(s) 9
Sse9I AATT 4 cut(s) 66, 328, 346, 480
SsiI CCGC 3 cut(s) 23, 315, 325
SspMI CTAG 2 cut(s) 87, 237
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 4 cut(s) 11, 112, 136, 413
TaqI TCGA 1 cut(s) 333
TasI AATT 4 cut(s) 66, 328, 346, 480
TfiI GAWTC 3 cut(s) 128, 274, 475
TseI GCWGC 2 cut(s) 90, 469
TspDTI ATGAA 5 cut(s) 17, 40, 201, 359, 431
TspGWI ACGGA 1 cut(s) 384
XapI RAATTY 2 cut(s) 328, 346
XceI RCATGY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 87, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.