Rmu_ssc0000155.1_g000004

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000155.1
OG0000491
Physical Location & Seq
Reverse (-)
17280 .. 18134
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000155.1_g000004.1.cds

Sequence Viewer

Length: 753 bp
atggttgataagaagcgtgcagatatagaaatgtggatgtcaaatcatggtcttcctgatgatttgatgtctctctcgataaatattgaagaagattatctaaaaagacacattaatgaagatgtgaatgcttttttcatccacgattgttctatcggaagtgatgcattgggttttgtttgcgtaaaagcattgaagagaatacccattcttcgaaaattgaatgaaggagacttcaaagtgtttttggatgggatagctcacaacaaccgtacacttgcaatcaatgacaaagatcagtacattactcgagcccgagaaagacttggtagtatgtacttgattatagatggcgtaattgaacgcaaggatgctaaaacaatgagcacccaaactatgcgtcgccatgattgttgtggagaagaacttctgcgttgggcaatattgaactatcagaaaaaggatcgcgatcgcgatccccttcctatttcaacagtaaatgtcaaatgtctaacgaaaacagaagcttttgagttcaaccatgatggcttgatccgaattctcacagcgttaagcaaatcaggcaaatcaatgctgttggggtcgctgttggggtcggtggcccacgatcgcagcaccaaacaacggatcgaggtaaaaccttatacatggataccaatccatttgtttcgtgcattcagccaactcattcatgaggccgactgccggcccatttattttcccatatattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.88

Weight (kDa)

8.46

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 468, 474
AclWI GGATC 4 cut(s) 470, 471, 547, 656
AcsI RAATTY 1 cut(s) 558
AfaI GTAC 3 cut(s) 274, 302, 338
AfiI CCNNNNNNNGG 2 cut(s) 645, 726
AgsI TTSAA 8 cut(s) 89, 196, 223, 238, 362, 448, 492, 538
AluBI AGCT 2 cut(s) 260, 527
AluI AGCT 2 cut(s) 260, 527
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 2 cut(s) 75, 225
AlwI GGATC 4 cut(s) 470, 471, 547, 656
Ama87I CYCGRG 2 cut(s) 309, 315
AoxI GGCC 3 cut(s) 621, 717, 728
ApeKI GCWGC 1 cut(s) 633
ApoI RAATTY 1 cut(s) 558
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
AseI ATTAAT 1 cut(s) 114
AsiSI GCGATCGC 1 cut(s) 472
Asp700I GAANNNNTTC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 622, 729
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 2 cut(s) 309, 315
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 645
BccI CCATC 3 cut(s) 245, 344, 539
BciVI GTATCC 1 cut(s) 666
BcoDI GTCTC 2 cut(s) 75, 225
BfuI GTATCC 1 cut(s) 666
BisI GCNGC 1 cut(s) 634
BlsI GCNGC 1 cut(s) 635
BmeT110I CYCGRG 2 cut(s) 309, 315
BmgT120I GGNCC 2 cut(s) 622, 729
BmsI GCATC 2 cut(s) 154, 361
BpiI GAAGAC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 214
BsaBI GATNNNNATC 3 cut(s) 468, 474, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 645, 726
Bse118I RCCGGY 1 cut(s) 726
Bse8I GATNNNNATC 3 cut(s) 468, 474, 677
BseGI GGATG 4 cut(s) 42, 138, 256, 376
BseJI GATNNNNATC 3 cut(s) 468, 474, 677
BseLI CCNNNNNNNGG 2 cut(s) 645, 726
BseXI GCAGC 1 cut(s) 645
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 2 cut(s) 468, 474
Bsh1285I CGRYCG 2 cut(s) 472, 631
BshFI GGCC 3 cut(s) 623, 719, 730
BsiEI CGRYCG 2 cut(s) 472, 631
BsiHKAI GWGCWC 1 cut(s) 389
BsiHKCI CYCGRG 2 cut(s) 309, 315
BsiSI CCGG 1 cut(s) 727
BslI CCNNNNNNNGG 2 cut(s) 645, 726
BsmAI GTCTC 2 cut(s) 75, 225
BsmI GAATGC 2 cut(s) 133, 695
BsnI GGCC 3 cut(s) 623, 719, 730
BsoBI CYCGRG 2 cut(s) 309, 315
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 316, 389
Bsp143I GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
Bsp68I TCGCGA 2 cut(s) 468, 474
BspANI GGCC 3 cut(s) 623, 719, 730
BspFNI CGCG 2 cut(s) 468, 474
BspHI TCATGA 1 cut(s) 712
BspPI GGATC 4 cut(s) 470, 471, 547, 656
BspT104I TTCGAA 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 726
BssAI RCCGGY 1 cut(s) 726
BssMI GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
Bst4CI ACNGT 2 cut(s) 272, 496
Bst6I CTCTTC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 18, 728
BstF5I GGATG 4 cut(s) 42, 138, 256, 376
BstFNI CGCG 2 cut(s) 468, 474
BstKTI GATC 7 cut(s) 298, 466, 472, 478, 555, 631, 651
BstMAI GTCTC 2 cut(s) 75, 225
BstMBI GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
BstMCI CGRYCG 2 cut(s) 472, 631
BstMWI GCNNNNNNNGC 1 cut(s) 582
BstUI CGCG 2 cut(s) 468, 474
BstV1I GCAGC 1 cut(s) 645
BstV2I GAAGAC 1 cut(s) 44
BsuI GTATCC 1 cut(s) 666
BsuRI GGCC 3 cut(s) 623, 719, 730
BtsCI GGATG 4 cut(s) 42, 138, 256, 376
BtuMI TCGCGA 2 cut(s) 468, 474
Cac8I GCNNGC 2 cut(s) 18, 728
CciI TCATGA 1 cut(s) 712
Cfr10I RCCGGY 1 cut(s) 726
Cfr13I GGNCC 2 cut(s) 622, 729
CseI GACGC 1 cut(s) 389
Csp6I GTAC 3 cut(s) 273, 301, 337
CviAII CATG 5 cut(s) 47, 407, 542, 669, 713
CviJI RGCY 8 cut(s) 260, 314, 527, 549, 623, 702, 719, 730
CviKI_1 RGCY 8 cut(s) 260, 314, 527, 549, 623, 702, 719, 730
CviQI GTAC 3 cut(s) 273, 301, 337
DpnI GATC 7 cut(s) 297, 465, 471, 477, 554, 630, 650
DpnII GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 316
Eco88I CYCGRG 2 cut(s) 309, 315
EcoRI GAATTC 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 5 cut(s) 50, 410, 545, 672, 716
FatI CATG 5 cut(s) 46, 406, 541, 668, 712
Fnu4HI GCNGC 1 cut(s) 634
FokI GGATG 4 cut(s) 49, 125, 263, 383
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 634
GluI GCNGC 1 cut(s) 634
HaeIII GGCC 3 cut(s) 623, 719, 730
HapII CCGG 1 cut(s) 727
HgaI GACGC 1 cut(s) 389
Hin1II CATG 5 cut(s) 50, 410, 545, 672, 716
HindIII AAGCTT 1 cut(s) 525
HpaII CCGG 1 cut(s) 727
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 158, 456, 557
Hpy188III TCNNGA 5 cut(s) 56, 76, 467, 473, 713
Hpy8I GTNNAC 1 cut(s) 275
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 221, 491
HpyCH4III ACNGT 2 cut(s) 272, 496
HpyCH4V TGCA 4 cut(s) 20, 167, 281, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 582
Hsp92II CATG 5 cut(s) 50, 410, 545, 672, 716
KroI GCCGGC 1 cut(s) 726
KroNI GCCGGC 1 cut(s) 728
Kzo9I GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
LpnPI CCDG 3 cut(s) 69, 567, 740
Lsp1109I GCAGC 1 cut(s) 645
LweI GCATC 2 cut(s) 154, 361
MalI GATC 7 cut(s) 297, 465, 471, 477, 554, 630, 650
MboI GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
MboII GAAGA 7 cut(s) 44, 101, 104, 131, 203, 208, 434
MhlI GDGCHC 2 cut(s) 316, 389
MluCI AATT 3 cut(s) 218, 357, 558
MnlI CCTC 2 cut(s) 646, 709
Mph1103I ATGCAT 1 cut(s) 169
MroNI GCCGGC 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 2 cut(s) 114, 572
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 1 cut(s) 727
Mva1269I GAATGC 2 cut(s) 133, 695
MvnI CGCG 2 cut(s) 468, 474
MwoI GCNNNNNNNGC 1 cut(s) 582
NaeI GCCGGC 1 cut(s) 728
NdeII GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
NgoMIV GCCGGC 1 cut(s) 726
NlaIII CATG 5 cut(s) 50, 410, 545, 672, 716
NruI TCGCGA 2 cut(s) 468, 474
NsiI ATGCAT 1 cut(s) 169
NspV TTCGAA 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 309
PagI TCATGA 1 cut(s) 712
PctI GAATGC 2 cut(s) 133, 695
PdiI GCCGGC 1 cut(s) 728
PdmI GAANNNNTTC 1 cut(s) 426
PkrI GCNGC 1 cut(s) 635
Ple19I CGATCG 2 cut(s) 472, 631
PshBI ATTAAT 1 cut(s) 114
PspPI GGNCC 2 cut(s) 622, 729
PspXI VCTCGAGB 1 cut(s) 309
PvuI CGATCG 2 cut(s) 472, 631
RgaI GCGATCGC 1 cut(s) 472
RruI TCGCGA 2 cut(s) 468, 474
RsaI GTAC 3 cut(s) 274, 302, 338
RsaNI GTAC 3 cut(s) 273, 301, 337
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 114, 572
SatI GCNGC 1 cut(s) 634
Sau3AI GATC 7 cut(s) 295, 463, 469, 475, 552, 628, 648
Sau96I GGNCC 2 cut(s) 622, 729
SduI GDGCHC 2 cut(s) 316, 389
SetI ASST 4 cut(s) 262, 529, 657, 664
SfaAI GCGATCGC 1 cut(s) 472
SfaNI GCATC 2 cut(s) 154, 361
Sfr274I CTCGAG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 214
SgfI GCGATCGC 1 cut(s) 472
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 3 cut(s) 218, 357, 558
SspI AATATT 2 cut(s) 85, 444
TaaI ACNGT 2 cut(s) 272, 496
TaqI TCGA 4 cut(s) 77, 214, 310, 651
TasI AATT 3 cut(s) 218, 357, 558
TatI WGTACW 2 cut(s) 300, 336
Tru1I TTAA 2 cut(s) 114, 572
Tru9I TTAA 2 cut(s) 114, 572
TseI GCWGC 1 cut(s) 633
TspDTI ATGAA 4 cut(s) 127, 132, 240, 701
TspGWI ACGGA 1 cut(s) 661
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 558
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XhoI CTCGAG 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.