Rorug05G0054200

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000491
Physical Location & Seq
Reverse (-)
4726123 .. 4726428
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0054200.1

Sequence Viewer

Length: 243 bp
ATGATCCTTGTCACTTTCGATGTTGCGCCTCTGACTTTCCTCGACCTCCACAATTTCTTTCACAGATTCGGTGAGGTCGATTCTGTGAGTTTACCAGAAGGGGCAGGTGACCAGCCCAGGTGGGCCACTGTGACCTTCCAGGCCCCTCAGGCTGTAACCAACCTTCTGAAGGGTGCACAGGTCCTCACGCTCTACGTAGGGAACAAAGAGATAACAGCACGGCCATATGTCCATGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

80

Amino Acids

8.9

Weight (kDa)

5.38

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 169
AjnI CCWGG 2 cut(s) 116, 138
Alw21I GWGCWC 1 cut(s) 178
Alw44I GTGCAC 1 cut(s) 174
AoxI GGCC 3 cut(s) 123, 141, 221
ApaLI GTGCAC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 123, 142, 181
AsuHPI GGTGA 2 cut(s) 83, 119
AvaII GGWCC 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 178
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
Bbv12I GWGCWC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 2 cut(s) 118, 140
BfuAI ACCTGC 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 118, 140
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 3 cut(s) 123, 142, 181
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 118, 140
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse21I CCTNAGG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 118, 140
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 178
BshFI GGCC 3 cut(s) 125, 143, 223
BsiHKAI GWGCWC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 3 cut(s) 125, 143, 223
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 3 cut(s) 125, 143, 223
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 118, 140
Bst4CI ACNGT 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 147
BstEII GGTNACC 1 cut(s) 107
BstENI CCTNNNNNAGG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 2 cut(s) 118, 140
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 116, 138
BstSLI GKGCMC 1 cut(s) 178
BstSNI TACGTA 1 cut(s) 196
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 3 cut(s) 125, 143, 223
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 1 cut(s) 95
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 123, 142, 181
CviAII CATG 1 cut(s) 233
CviJI RGCY 6 cut(s) 115, 125, 143, 152, 223, 238
CviKI_1 RGCY 6 cut(s) 115, 125, 143, 152, 223, 238
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 221
Eco105I TACGTA 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoO109I RGGNCCY 2 cut(s) 142, 181
EcoO65I GGTNACC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 116, 138
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 226, 228, 234
FatI CATG 1 cut(s) 232
FauNDI CATATG 1 cut(s) 226
GlaI GCGC 1 cut(s) 27
HaeIII GGCC 3 cut(s) 125, 143, 223
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 2 cut(s) 66, 80
HphI GGTGA 2 cut(s) 83, 119
Hpy166II GTNNAC 2 cut(s) 92, 176
Hpy188I TCNGA 2 cut(s) 33, 168
Hpy8I GTNNAC 2 cut(s) 92, 176
HpyAV CCTTC 4 cut(s) 92, 145, 163, 173
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 9 cut(s) 90, 103, 108, 125, 125, 130, 134, 152, 164
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 4 cut(s) 10, 107, 130, 154
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 52
MnlI CCTC 6 cut(s) 39, 50, 56, 67, 156, 194
MseI TTAA 1 cut(s) 241
MspR9I CCNGG 2 cut(s) 118, 140
MvaI CCWGG 2 cut(s) 118, 140
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 226
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 3 cut(s) 10, 107, 130
PaqCI CACCTGC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 2 cut(s) 66, 80
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 116, 138
PspEI GGTNACC 1 cut(s) 107
PspGI CCWGG 2 cut(s) 116, 138
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 3 cut(s) 123, 142, 181
PspPPI RGGWCCY 1 cut(s) 181
SaqAI TTAA 1 cut(s) 241
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 3 cut(s) 123, 142, 181
ScrFI CCNGG 2 cut(s) 118, 140
SduI GDGCHC 1 cut(s) 178
SetI ASST 8 cut(s) 48, 78, 109, 122, 137, 165, 183, 198
SinI GGWCC 1 cut(s) 181
SnaBI TACGTA 1 cut(s) 196
Sse9I AATT 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 116, 138
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 18, 42, 78
TasI AATT 1 cut(s) 52
TfiI GAWTC 2 cut(s) 66, 80
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 3 cut(s) 10, 107, 130
Tsp45I GTSAC 3 cut(s) 10, 107, 130
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.