FvH4_3g12111

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000491
Physical Location & Seq
Forward (+)
7182132 .. 7182898
767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12111.t1

Sequence Viewer

Length: 699 bp
ATGCTTCGAAAACTGCATGAATACGCTTTGGAAATCATCTGCAACCATCTTGAGCCAGTGGTCTACATGATGAACAGCTATGTTGTTAGAGCGGGAAAACCACTTGGTTTTATGATCTTCATTCTAGAAGGGAAAGTTATAATAACAAGTTCCTCAGAGATCACCGAGCCATCTGATGAGAACGTTATTGAGAGAGGTTGTTACTATGGAGAACAACTTCTGAGCTGGGCATCACCCAACAACATTTCTTCTTCTGACAATCCCGTCATCTCAACTAGAGATGTCAAATGTCCAACGAAAGTGGAAGCCTTGATTCTCAAAGCCGAGGACTTGAAAAGTGCAGCCTCCAAATGCGGATCGCAGTGGAACTTCAACAATTGTATGAATTCTCAGCAGGTGGTTGATGTTGGCAAAGATCGTGCGGCTAATACAGCACCAACATCCACTATTGAGGAGGAAGCTATCCAGCTTCATCAGGGTCATGACATGATTCTGGAGCAACTAGTTCTAATTAGAGAGACCATATTCCGGAGATTAGACGACATTAGATCAGGGATTAGAGACCACGGAACAAAATTAGATGATCAGGGACGAAGATTAGATGATCAGGGACGAAGATTAGACGACATGGCTGCATTTTTAGCTACAGTGAGCTATACAGGACTTACAGGCACATCTTCTACTCCTTCAGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.81

Weight (kDa)

5.17

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AarI CACCTGC 1 cut(s) 385
AasI GACNNNNNNGTC 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 385
AccBSI CCGCTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 528
AciI CCGC 3 cut(s) 92, 354, 422
AclI AACGTT 1 cut(s) 183
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 672
AfiI CCNNNNNNNGG 1 cut(s) 528
AgsI TTSAA 2 cut(s) 334, 373
AhlI ACTAGT 1 cut(s) 502
AluBI AGCT 6 cut(s) 78, 225, 461, 469, 644, 654
AluI AGCT 6 cut(s) 78, 225, 461, 469, 644, 654
Alw26I GTCTC 2 cut(s) 512, 555
AlwI GGATC 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 528
ApeKI GCWGC 2 cut(s) 341, 632
ApoI RAATTY 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 154, 225
AsuII TTCGAA 1 cut(s) 7
BbvI GCAGC 2 cut(s) 353, 619
BccI CCATC 2 cut(s) 54, 178
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BclI TGATCA 2 cut(s) 583, 604
BcoDI GTCTC 2 cut(s) 512, 555
BcuI ACTAGT 1 cut(s) 502
BfaI CTAG 3 cut(s) 125, 276, 503
BfmI CTRYAG 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 3 cut(s) 342, 423, 633
BlsI GCNGC 3 cut(s) 343, 424, 634
BmsI GCATC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 2 cut(s) 512, 555
BsaJI CCNNGG 2 cut(s) 324, 565
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 528
BseDI CCNNGG 2 cut(s) 324, 565
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMII CTCAG 3 cut(s) 168, 212, 404
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 2 cut(s) 353, 619
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 529
BslFI GGGAC 2 cut(s) 603, 624
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 2 cut(s) 512, 555
BsmFI GGGAC 2 cut(s) 603, 624
Bso31I GGTCTC 2 cut(s) 512, 555
Bsp119I TTCGAA 1 cut(s) 7
Bsp13I TCCGGA 1 cut(s) 528
Bsp143I GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
BspACI CCGC 3 cut(s) 92, 354, 422
BspCNI CTCAG 3 cut(s) 167, 213, 403
BspEI TCCGGA 1 cut(s) 528
BspHI TCATGA 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 1 cut(s) 364
BspT104I TTCGAA 1 cut(s) 7
BspTNI GGTCTC 2 cut(s) 512, 555
BsrBI CCGCTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 324, 565
BssMI GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
Bst4CI ACNGT 1 cut(s) 649
BstBI TTCGAA 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 154, 221, 390
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 1 cut(s) 440
BstKTI GATC 7 cut(s) 117, 162, 359, 418, 551, 586, 607
BstMAI GTCTC 2 cut(s) 512, 555
BstMBI GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
BstMWI GCNNNNNNNGC 2 cut(s) 431, 641
BstSFI CTRYAG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 353, 619
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 1 cut(s) 440
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 3 cut(s) 63, 368, 654
BveI ACCTGC 1 cut(s) 385
CciI TCATGA 1 cut(s) 481
CspCI CAANNNNNGTGG 2 cut(s) 282, 317
CviAII CATG 5 cut(s) 17, 67, 482, 487, 628
DdeI CTNAG 3 cut(s) 154, 221, 390
DpnI GATC 7 cut(s) 116, 161, 358, 417, 550, 585, 606
DpnII GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eco31I GGTCTC 2 cut(s) 512, 555
Eco57I CTGAAG 1 cut(s) 672
EcoRI GAATTC 1 cut(s) 385
FaeI CATG 5 cut(s) 20, 70, 485, 490, 631
FaqI GGGAC 2 cut(s) 603, 624
FatI CATG 5 cut(s) 16, 66, 481, 486, 627
FauI CCCGC 1 cut(s) 85
FbaI TGATCA 2 cut(s) 583, 604
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 342, 423, 633
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 3 cut(s) 342, 423, 633
FspBI CTAG 3 cut(s) 125, 276, 503
GluI GCNGC 3 cut(s) 342, 423, 633
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 515
HapII CCGG 1 cut(s) 529
Hin1II CATG 5 cut(s) 20, 70, 485, 490, 631
HinfI GANTC 2 cut(s) 313, 490
HpaII CCGG 1 cut(s) 529
HphI GGTGA 2 cut(s) 154, 225
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 157, 175, 222, 256
Hpy188III TCNNGA 5 cut(s) 50, 125, 482, 494, 529
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 122, 696
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 16, 42, 341, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 641
HpyF3I CTNAG 3 cut(s) 154, 221, 390
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 5 cut(s) 20, 70, 485, 490, 631
Kpn2I TCCGGA 1 cut(s) 528
Ksp22I TGATCA 2 cut(s) 583, 604
Kzo9I GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 2 cut(s) 353, 619
LweI GCATC 1 cut(s) 239
MaeI CTAG 3 cut(s) 125, 276, 503
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 200
MalI GATC 7 cut(s) 116, 161, 358, 417, 550, 585, 606
MbiI CCGCTC 1 cut(s) 92
MboI GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
MboII GAAGA 6 cut(s) 109, 240, 243, 606, 627, 669
MfeI CAATTG 1 cut(s) 376
MluCI AATT 4 cut(s) 376, 385, 510, 575
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 6 cut(s) 163, 188, 319, 355, 445, 448
MroI TCCGGA 1 cut(s) 528
MroXI GAANNNNTTC 1 cut(s) 216
MspI CCGG 1 cut(s) 529
MunI CAATTG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 431, 641
NdeII GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
NlaIII CATG 5 cut(s) 20, 70, 485, 490, 631
NmeAIII GCCGAG 1 cut(s) 349
NspV TTCGAA 1 cut(s) 7
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 313, 490
PkrI GCNGC 3 cut(s) 343, 424, 634
PsiI TTATAA 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 225
SatI GCNGC 3 cut(s) 342, 423, 633
Sau3AI GATC 7 cut(s) 114, 159, 356, 415, 548, 583, 604
SetI ASST 9 cut(s) 80, 186, 199, 227, 399, 463, 471, 646, 656
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 645
SfuI TTCGAA 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 502
Sse9I AATT 4 cut(s) 376, 385, 510, 575
SsiI CCGC 3 cut(s) 92, 354, 422
SspMI CTAG 3 cut(s) 125, 276, 503
TaaI ACNGT 1 cut(s) 649
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 7
TasI AATT 4 cut(s) 376, 385, 510, 575
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 2 cut(s) 313, 490
TscAI CASTG 3 cut(s) 63, 368, 654
TseI GCWGC 2 cut(s) 341, 632
TspDTI ATGAA 5 cut(s) 33, 86, 109, 398, 461
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 3 cut(s) 63, 368, 654
XapI RAATTY 1 cut(s) 385
XbaI TCTAGA 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 3 cut(s) 125, 276, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.