Rh2DG541600

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000491
Physical Location & Seq
Reverse (-)
77114277 .. 77116813
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG541600.1

Sequence Viewer

Length: 900 bp
ATGAAGACAGCAATCAGGAAAGACATAAAAGAATGGAACATAGCCGGGAGATACATAGATCATGATGTGGATGTTCGATTTGTCAATAACATTTGTGGAGGAAACATCGTATTAGTCCTGTCGGAATTTTTCCGGCTAAATGCTCTAAAGAAAGTACCCATGCTTCAAAATGTGCCAGAGTTCGGTTTGATACTTATCAGCCAATATCTCTATCTAGAAACCTACGATGAGAATGCAGTTGTTGCCCGAGCAGGAAAACCGATTGATTCGATGTTCTTCATTATAGATGGTGTGATTGATTGGACTGACGAGACTAACATGGCTACCGATGCTGAAACCACGGGTTCTTCTTCCTCATCTAATAGCAGCAAGCTTAAGAACGTTCCTAAGGTGAAATGGAAACGTCCTTACCGTGGGTGGCTGAAAGTGAACTGTAGTGCTGTGTGGGAACGTGAATCAAGAGTGGCAGGCATGGCTTGGGTTTGCAGGAACGATGAAGGAGCTTTCGTGGCCGCTGGAAGTCTTGGTGGGATAAGATGCATGGACAGGTTCTTCGCTGAAGCTCTCAGCATCGCTAAGGCTATCGAGTTTTGTACCACTATTATTAGTGATGTTTCTGGCGACAACGTCGGCCGCATAATTGTGGAGTCTGATAACCAGGATCTCATGGATTGCTTGCTTCAGCTGCATGACGAGGACCTATTTGTACCGAAAACATACTTGAACAACTCTAGCTTGGAACCGAATAACCGTATTGGCAAAAACCTTCGACCAATCCTTGGGGATATTTACATCCGCTTGGCTCCAGGGTTTAAGGCTATTACTTACGTGCATTGTGATAGCCAATGTAATGCAGCTGCTCATTGCGTAGCATCTCACGCCATGGATGATGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

299

Amino Acids

33.41

Weight (kDa)

5.46

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 144 - 229 6.9e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 779
AciI CCGC 3 cut(s) 513, 634, 796
AclI AACGTT 1 cut(s) 381
AclWI GGATC 1 cut(s) 669
AcoI YGGCCR 2 cut(s) 510, 631
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 579, 665
AfaI GTAC 3 cut(s) 156, 595, 708
AfiI CCNNNNNNNGG 3 cut(s) 182, 413, 779
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 2 cut(s) 167, 724
AjnI CCWGG 2 cut(s) 657, 805
AluBI AGCT 6 cut(s) 373, 503, 563, 685, 735, 857
AluI AGCT 6 cut(s) 373, 503, 563, 685, 735, 857
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 669
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 2 cut(s) 510, 631
ApeKI GCWGC 4 cut(s) 366, 685, 854, 857
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 536, 568
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 697
AxyI CCTNAGG 1 cut(s) 387
BarI GAAGNNNNNNTAC 2 cut(s) 147, 179
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 4 cut(s) 378, 672, 844, 866
BccI CCATC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 2 cut(s) 659, 807
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 215, 732
BfmI CTRYAG 1 cut(s) 433
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 6 cut(s) 367, 513, 634, 686, 855, 858
BlsI GCNGC 6 cut(s) 368, 514, 635, 687, 856, 859
Bme1390I CCNGG 3 cut(s) 46, 659, 807
Bme18I GGWCC 1 cut(s) 697
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 2 cut(s) 741, 804
BmrFI CCNGG 3 cut(s) 46, 659, 807
BmsI GCATC 4 cut(s) 319, 527, 579, 881
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 194
BsaJI CCNNGG 5 cut(s) 339, 412, 778, 806, 882
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 413, 779
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 862
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 2 cut(s) 659, 807
BseDI CCNNGG 5 cut(s) 339, 412, 778, 806, 882
BseGI GGATG 3 cut(s) 76, 792, 892
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 3 cut(s) 182, 413, 779
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 1 cut(s) 580
BseX3I CGGCCG 1 cut(s) 631
BseXI GCAGC 4 cut(s) 378, 672, 844, 866
Bsh1285I CGRYCG 1 cut(s) 634
BshFI GGCC 2 cut(s) 512, 633
BsiEI CGRYCG 1 cut(s) 634
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 2 cut(s) 45, 133
BslI CCNNNNNNNGG 3 cut(s) 182, 413, 779
BsmAI GTCTC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 2 cut(s) 512, 633
BsoBI CYCGRG 1 cut(s) 246
Bsp143I GATC 2 cut(s) 58, 661
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 3 cut(s) 513, 634, 796
BspANI GGCC 2 cut(s) 512, 633
BspCNI CTCAG 1 cut(s) 579
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 741, 804
BspPI GGATC 1 cut(s) 669
BspTI CTTAAG 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 862
BssECI CCNNGG 5 cut(s) 339, 412, 778, 806, 882
BssMI GATC 2 cut(s) 58, 661
BssT1I CCWWGG 2 cut(s) 778, 882
Bst2UI CCWGG 2 cut(s) 659, 807
Bst4CI ACNGT 3 cut(s) 413, 434, 752
BstAFI CTTAAG 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 829
BstC8I GCNNGC 3 cut(s) 371, 469, 677
BstDEI CTNAG 3 cut(s) 387, 566, 576
BstDSI CCRYGG 3 cut(s) 339, 412, 882
BstF5I GGATG 3 cut(s) 76, 792, 892
BstKTI GATC 2 cut(s) 61, 664
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 2 cut(s) 58, 661
BstMCI CGRYCG 1 cut(s) 634
BstMWI GCNNNNNNNGC 6 cut(s) 242, 329, 473, 509, 685, 878
BstNI CCWGG 2 cut(s) 659, 807
BstSCI CCNGG 3 cut(s) 44, 657, 805
BstSFI CTRYAG 1 cut(s) 433
BstV1I GCAGC 4 cut(s) 378, 672, 844, 866
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BstZI CGGCCG 1 cut(s) 631
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 2 cut(s) 512, 633
BtgI CCRYGG 3 cut(s) 339, 412, 882
BtgZI GCGATG 1 cut(s) 556
BtsCI GGATG 3 cut(s) 76, 792, 892
Cac8I GCNNGC 3 cut(s) 371, 469, 677
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 697
Csp6I GTAC 3 cut(s) 155, 594, 707
CviAII CATG 8 cut(s) 62, 160, 319, 472, 541, 667, 689, 883
CviQI GTAC 3 cut(s) 155, 594, 707
DdeI CTNAG 3 cut(s) 387, 566, 576
DpnI GATC 2 cut(s) 60, 663
DpnII GATC 2 cut(s) 58, 661
EaeI YGGCCR 2 cut(s) 510, 631
EagI CGGCCG 1 cut(s) 631
EclXI CGGCCG 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 778, 882
Eco47I GGWCC 1 cut(s) 697
Eco52I CGGCCG 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 579, 665
Eco81I CCTNAGG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 697
EcoRII CCWGG 2 cut(s) 657, 805
EcoT14I CCWWGG 2 cut(s) 778, 882
EcoT22I ATGCAT 1 cut(s) 542
ErhI CCWWGG 2 cut(s) 778, 882
FaeI CATG 8 cut(s) 65, 163, 322, 475, 544, 670, 692, 886
FatI CATG 8 cut(s) 61, 159, 318, 471, 540, 666, 688, 882
Fnu4HI GCNGC 6 cut(s) 367, 513, 634, 686, 855, 858
FokI GGATG 2 cut(s) 83, 779
Fsp4HI GCNGC 6 cut(s) 367, 513, 634, 686, 855, 858
FspBI CTAG 2 cut(s) 215, 732
GluI GCNGC 6 cut(s) 367, 513, 634, 686, 855, 858
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 2 cut(s) 512, 633
HapII CCGG 2 cut(s) 45, 133
Hin1II CATG 8 cut(s) 65, 163, 322, 475, 544, 670, 692, 886
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 3 cut(s) 266, 455, 647
HpaII CCGG 2 cut(s) 45, 133
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 430, 895
Hpy188I TCNGA 2 cut(s) 124, 652
Hpy188III TCNNGA 4 cut(s) 16, 62, 215, 459
Hpy8I GTNNAC 2 cut(s) 430, 895
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 2 cut(s) 491, 776
HpyCH4III ACNGT 3 cut(s) 413, 434, 752
HpyCH4IV ACGT 5 cut(s) 381, 403, 451, 627, 828
HpyCH4V TGCA 6 cut(s) 236, 486, 540, 688, 832, 854
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 329, 473, 509, 685, 878
HpyF3I CTNAG 3 cut(s) 387, 566, 576
HpySE526I ACGT 5 cut(s) 381, 403, 451, 627, 828
Hsp92II CATG 8 cut(s) 65, 163, 322, 475, 544, 670, 692, 886
Kzo9I GATC 2 cut(s) 58, 661
LmnI GCTCC 2 cut(s) 500, 808
Lsp1109I GCAGC 4 cut(s) 378, 672, 844, 866
LweI GCATC 4 cut(s) 319, 527, 579, 881
MaeI CTAG 2 cut(s) 215, 732
MaeII ACGT 5 cut(s) 381, 403, 451, 627, 828
MalI GATC 2 cut(s) 60, 663
MboI GATC 2 cut(s) 58, 661
MboII GAAGA 5 cut(s) 16, 268, 339, 342, 544
MflI RGATCY 1 cut(s) 661
MluCI AATT 2 cut(s) 125, 639
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 3 cut(s) 92, 364, 688
Mph1103I ATGCAT 1 cut(s) 542
MseI TTAA 2 cut(s) 375, 813
MslI CAYNNNNRTG 1 cut(s) 641
MspA1I CMGCKG 3 cut(s) 515, 685, 857
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 2 cut(s) 45, 133
MspR9I CCNGG 3 cut(s) 46, 659, 807
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 2 cut(s) 659, 807
MwoI GCNNNNNNNGC 6 cut(s) 242, 329, 473, 509, 685, 878
NciI CCSGG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 882
NdeII GATC 2 cut(s) 58, 661
NlaIII CATG 8 cut(s) 65, 163, 322, 475, 544, 670, 692, 886
NlaIV GGNNCC 2 cut(s) 741, 804
NsiI ATGCAT 1 cut(s) 542
PagI TCATGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 266, 455
PflFI GACNNNGTC 1 cut(s) 626
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 6 cut(s) 368, 514, 635, 687, 856, 859
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 829
PpuMI RGGWCCY 1 cut(s) 697
Psp1406I AACGTT 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 697
Psp6I CCWGG 2 cut(s) 657, 805
PspGI CCWGG 2 cut(s) 657, 805
PspN4I GGNNCC 2 cut(s) 741, 804
PspPI GGNCC 1 cut(s) 697
PspPPI RGGWCCY 1 cut(s) 697
PsuI RGATCY 1 cut(s) 661
PsyI GACNNNGTC 1 cut(s) 626
PvuII CAGCTG 2 cut(s) 685, 857
RsaI GTAC 3 cut(s) 156, 595, 708
RsaNI GTAC 3 cut(s) 155, 594, 707
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 2 cut(s) 375, 813
SatI GCNGC 6 cut(s) 367, 513, 634, 686, 855, 858
Sau3AI GATC 2 cut(s) 58, 661
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 3 cut(s) 46, 659, 807
SfaNI GCATC 4 cut(s) 319, 527, 579, 881
SfcI CTRYAG 1 cut(s) 433
SinI GGWCC 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 125, 639
SsiI CCGC 3 cut(s) 513, 634, 796
SspMI CTAG 2 cut(s) 215, 732
StyD4I CCNGG 3 cut(s) 44, 657, 805
StyI CCWWGG 2 cut(s) 778, 882
TaaI ACNGT 3 cut(s) 413, 434, 752
TaiI ACGT 5 cut(s) 384, 406, 454, 630, 831
TaqI TCGA 4 cut(s) 76, 269, 585, 769
TasI AATT 2 cut(s) 125, 639
TauI GCSGC 2 cut(s) 515, 636
TfiI GAWTC 2 cut(s) 266, 455
Tru1I TTAA 2 cut(s) 375, 813
Tru9I TTAA 2 cut(s) 375, 813
TseI GCWGC 4 cut(s) 366, 685, 854, 857
TspDTI ATGAA 3 cut(s) 17, 268, 510
Tth111I GACNNNGTC 1 cut(s) 626
Van91I CCANNNNNTGG 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 1 cut(s) 125
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 2 cut(s) 215, 732
Zsp2I ATGCAT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.