Rmu_sc0008321.1_g000001

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008321.1
OG0000491
Physical Location & Seq
Reverse (-)
4618 .. 5130
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008321.1_g000001.1.cds

Sequence Viewer

Length: 513 bp
atggcttgggtttgtaggaacgatgaaggagctttcgtggccgctggaagtcttggtgggataagatgcatggacaggttcttcgctgaagctctcagcatcgctaaggctatcgagttttgtaccactattattagtgatgtttctggcgacaacgtcggccgcataattgtggagtctgataaccaggatctcatggattgcttgcttcagctgcatgacgaggacctatttgtaccgaaaacatacttgaacaactctagcttggaaccgaataaccgtattggcaaaaaccttcgaccaatccttggggatatttacatccgcttggctccagggtttaaggctattacttacgtgcattgtgatagccaatataatgcagctgctcattgcgtagcatctcatgccatggatgatgttactgattcttcgtcttggtatggtcccgatccggcccctagttggctaattcctgctctcacgaaggatagcccgcatttgtacacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

170

Amino Acids

18.67

Weight (kDa)

4.69

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 308
AciI CCGC 4 cut(s) 42, 163, 325, 497
AclWI GGATC 2 cut(s) 198, 446
AcoI YGGCCR 2 cut(s) 39, 160
AcuI CTGAAG 2 cut(s) 108, 194
AfaI GTAC 3 cut(s) 124, 237, 506
AfiI CCNNNNNNNGG 2 cut(s) 308, 465
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 2 cut(s) 186, 334
AluBI AGCT 5 cut(s) 32, 92, 214, 264, 386
AluI AGCT 5 cut(s) 32, 92, 214, 264, 386
AlwI GGATC 2 cut(s) 198, 446
AoxI GGCC 3 cut(s) 39, 160, 456
ApeKI GCWGC 3 cut(s) 214, 383, 386
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspS9I GGNCC 3 cut(s) 226, 446, 457
AvaII GGWCC 2 cut(s) 226, 446
BbvI GCAGC 3 cut(s) 201, 373, 395
BciT130I CCWGG 2 cut(s) 188, 336
BfaI CTAG 2 cut(s) 261, 462
BisI GCNGC 5 cut(s) 42, 163, 215, 384, 387
BlsI GCNGC 5 cut(s) 43, 164, 216, 385, 388
Bme1390I CCNGG 2 cut(s) 188, 336
Bme18I GGWCC 2 cut(s) 226, 446
BmgT120I GGNCC 3 cut(s) 226, 446, 457
BmiI GGNNCC 4 cut(s) 270, 333, 448, 459
BmrFI CCNGG 2 cut(s) 188, 336
BmsI GCATC 3 cut(s) 56, 108, 410
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 307, 335, 411
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 465
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 2 cut(s) 188, 336
BseDI CCNNGG 3 cut(s) 307, 335, 411
BseGI GGATG 2 cut(s) 321, 421
BseLI CCNNNNNNNGG 2 cut(s) 308, 465
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 109
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 3 cut(s) 201, 373, 395
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 3 cut(s) 41, 162, 458
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 308, 465
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 3 cut(s) 41, 162, 458
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 2 cut(s) 190, 451
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 4 cut(s) 42, 163, 325, 497
BspANI GGCC 3 cut(s) 41, 162, 458
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 4 cut(s) 270, 333, 448, 459
BspPI GGATC 2 cut(s) 198, 446
BsrDI GCAATG 1 cut(s) 391
BsrGI TGTACA 1 cut(s) 504
BssECI CCNNGG 3 cut(s) 307, 335, 411
BssMI GATC 2 cut(s) 190, 451
BssT1I CCWWGG 2 cut(s) 307, 411
Bst2UI CCWGG 2 cut(s) 188, 336
Bst4CI ACNGT 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 2 cut(s) 206, 497
BstDEI CTNAG 2 cut(s) 95, 105
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 321, 421
BstKTI GATC 2 cut(s) 193, 454
BstMBI GATC 2 cut(s) 190, 451
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 38, 214, 407
BstNI CCWGG 2 cut(s) 188, 336
BstSCI CCNGG 2 cut(s) 186, 334
BstV1I GCAGC 3 cut(s) 201, 373, 395
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 3 cut(s) 41, 162, 458
BtgI CCRYGG 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 321, 421
Cac8I GCNNGC 2 cut(s) 206, 497
Cfr13I GGNCC 3 cut(s) 226, 446, 457
Csp6I GTAC 3 cut(s) 123, 236, 505
CviAII CATG 6 cut(s) 70, 196, 218, 407, 412, 510
CviQI GTAC 3 cut(s) 123, 236, 505
DdeI CTNAG 2 cut(s) 95, 105
DpnI GATC 2 cut(s) 192, 453
DpnII GATC 2 cut(s) 190, 451
EaeI YGGCCR 2 cut(s) 39, 160
EagI CGGCCG 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 307, 411
Eco47I GGWCC 2 cut(s) 226, 446
Eco52I CGGCCG 1 cut(s) 160
Eco57I CTGAAG 2 cut(s) 108, 194
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 186, 334
EcoT14I CCWWGG 2 cut(s) 307, 411
EcoT22I ATGCAT 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 307, 411
FaeI CATG 6 cut(s) 73, 199, 221, 410, 415, 513
FaqI GGGAC 1 cut(s) 432
FatI CATG 6 cut(s) 69, 195, 217, 406, 411, 509
FauI CCCGC 1 cut(s) 504
Fnu4HI GCNGC 5 cut(s) 42, 163, 215, 384, 387
FokI GGATG 2 cut(s) 308, 428
Fsp4HI GCNGC 5 cut(s) 42, 163, 215, 384, 387
FspBI CTAG 2 cut(s) 261, 462
GluI GCNGC 5 cut(s) 42, 163, 215, 384, 387
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 3 cut(s) 41, 162, 458
HapII CCGG 1 cut(s) 455
Hin1II CATG 6 cut(s) 73, 199, 221, 410, 415, 513
HinfI GANTC 2 cut(s) 176, 428
HpaII CCGG 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 449, 484
Hpy8I GTNNAC 1 cut(s) 507
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 20, 305, 481
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 2 cut(s) 156, 357
HpyCH4V TGCA 4 cut(s) 69, 217, 361, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 214, 407
HpyF3I CTNAG 2 cut(s) 95, 105
HpySE526I ACGT 2 cut(s) 156, 357
Hsp92II CATG 6 cut(s) 73, 199, 221, 410, 415, 513
Kzo9I GATC 2 cut(s) 190, 451
LmnI GCTCC 2 cut(s) 29, 337
LpnPI CCDG 9 cut(s) 30, 61, 132, 173, 200, 321, 348, 468, 489
Lsp1109I GCAGC 3 cut(s) 201, 373, 395
LweI GCATC 3 cut(s) 56, 108, 410
MaeI CTAG 2 cut(s) 261, 462
MaeII ACGT 2 cut(s) 156, 357
MaeIII GTNAC 1 cut(s) 421
MalI GATC 2 cut(s) 192, 453
MboI GATC 2 cut(s) 190, 451
MboII GAAGA 2 cut(s) 73, 423
MflI RGATCY 1 cut(s) 190
MluCI AATT 2 cut(s) 168, 471
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 1 cut(s) 217
Mph1103I ATGCAT 1 cut(s) 71
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 3 cut(s) 44, 214, 386
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 188, 336
MvaI CCWGG 2 cut(s) 188, 336
MwoI GCNNNNNNNGC 3 cut(s) 38, 214, 407
NcoI CCATGG 1 cut(s) 411
NdeII GATC 2 cut(s) 190, 451
NlaIII CATG 6 cut(s) 73, 199, 221, 410, 415, 513
NlaIV GGNNCC 4 cut(s) 270, 333, 448, 459
NsiI ATGCAT 1 cut(s) 71
PfeI GAWTC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 5 cut(s) 43, 164, 216, 385, 388
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 358
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 186, 334
PspGI CCWGG 2 cut(s) 186, 334
PspN4I GGNNCC 4 cut(s) 270, 333, 448, 459
PspPI GGNCC 3 cut(s) 226, 446, 457
PspPPI RGGWCCY 1 cut(s) 226
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 2 cut(s) 214, 386
RsaI GTAC 3 cut(s) 124, 237, 506
RsaNI GTAC 3 cut(s) 123, 236, 505
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 5 cut(s) 42, 163, 215, 384, 387
Sau3AI GATC 2 cut(s) 190, 451
Sau96I GGNCC 3 cut(s) 226, 446, 457
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 188, 336
SfaNI GCATC 3 cut(s) 56, 108, 410
SinI GGWCC 2 cut(s) 226, 446
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 2 cut(s) 168, 471
SsiI CCGC 4 cut(s) 42, 163, 325, 497
SspMI CTAG 2 cut(s) 261, 462
StyD4I CCNGG 2 cut(s) 186, 334
StyI CCWWGG 2 cut(s) 307, 411
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 2 cut(s) 159, 360
TaqI TCGA 2 cut(s) 114, 298
TasI AATT 2 cut(s) 168, 471
TatI WGTACW 1 cut(s) 504
TauI GCSGC 2 cut(s) 44, 165
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 3 cut(s) 214, 383, 386
TspDTI ATGAA 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 226, 446
XspI CTAG 2 cut(s) 261, 462
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.