Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000491

Physical Location & Seq

Genomic Coordinates Forward (+)

74488431 .. 74495584

Gene Structure 7154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG518300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACATATATACAGTTGGCCACTACAAAGTCAGTGAAGATTGAAGAGAAAGCTGTGGAATTAAGACGATCGAGAATTAATAAGAAGTATCGAGAAATGAAAATGTGGATGTCAAGTAATGGTCTCCCCGAGGATTTAAAGACAACAATTAGAGAATATATTAAAAAATCTAACGTAGCGGAGAAATACATAGATGCTCCAGTGAGTCTGAAAATTCTATACGGTTGTGCTGAAGAGGATGGAAGAGAGGATATTACAAATCCTATGGTCCAATATGTAACCGCGAAAGCGCTACAGAAATACTATGGACAAGAATTGTTGAATTGGGCAGTATTGAACTATGAGCGCGGCTATGACGACTGTAAGCACACTCGTCCTATTTGGACCCGAGATGTCAAATGTCGTACCGAAGTCGAAGCCCTCTGTATCGAGGACAAGGACTTATTAGATTTGCTACGACGTGTCAGACGGTACTACAACTGGAGGCAGAATAAGTGGGTGAAGCGGACACTTCCCCATGACAACACGGATGAGACATTAAACAAGACAAACTTGCAGCCGGCAACAACAGAATTGGAGGAGATTGAGGAGACAAAAAAGATGAAGATGAAGAACGTGGAATTAGATAAAGGTGGAGGAGAACCAAGGGAAGACATTGCGGATACGGGTGCATCTGCATCCACTACTGTTGAACAGATTATCCATCTTCAGGGTGAGATGCTTCGCGAGCAGCTGGTTCTAGCCCGACAGAATCGTGATGATATAGCCAGACTGGGACGAAAATTAGATGACATGGCTGTAATCTTAGCAACGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008455 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009312 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0030246 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

MGAT2

Protein Analysis

272

Amino Acids

31.79

Weight (kDa)

7.6

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis	RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata	RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora	Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa	Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha	Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana	Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	284, 348, 726
AciI	CCGC	5 cut(s)	179, 282, 348, 505, 659
AclI	AACGTT	1 cut(s)	812
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	2 cut(s)	252, 692
AfaI	GTAC	2 cut(s)	406, 473
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	44, 322, 337, 692
AjiI	CACGTC	1 cut(s)	461
AloI	GAACNNNNNNTCC	2 cut(s)	684, 716
AluBI	AGCT	2 cut(s)	53, 733
AluI	AGCT	2 cut(s)	53, 733
Alw26I	GTCTC	3 cut(s)	128, 527, 584
Ama87I	CYCGRG	2 cut(s)	128, 387
Aor51HI	AGCGCT	1 cut(s)	291
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	556, 730
ApoI	RAATTY	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	292, 348
AspS9I	GGNCC	2 cut(s)	268, 384
AsuHPI	GGTGA	2 cut(s)	511, 725
AvaI	CYCGRG	2 cut(s)	128, 387
AvaII	GGWCC	2 cut(s)	268, 384
BalI	TGGCCA	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	568, 742
BccI	CCATC	2 cut(s)	233, 711
BciVI	GTATCC	1 cut(s)	655
BcoDI	GTCTC	3 cut(s)	128, 527, 584
BfaI	CTAG	1 cut(s)	740
BfmI	CTRYAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	3 cut(s)	349, 557, 731
BlsI	GCNGC	3 cut(s)	350, 558, 732
Bme18I	GGWCC	2 cut(s)	268, 384
BmeT110I	CYCGRG	2 cut(s)	128, 387
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	268, 384
BmiI	GGNNCC	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	4 cut(s)	184, 680, 686, 708
BmuI	ACTGGG	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	657
BpmI	CTGGAG	2 cut(s)	183, 502
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	129, 644
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	3 cut(s)	200, 485, 777
Bse3DI	GCAATG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	129, 644
BseGI	GGATG	4 cut(s)	114, 244, 535, 677
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMI	GCAATG	1 cut(s)	654
BseNI	ACTGG	3 cut(s)	200, 485, 777
BseRI	GAGGAG	3 cut(s)	593, 602, 651
BseXI	GCAGC	2 cut(s)	568, 742
Bsh1236I	CGCG	3 cut(s)	284, 348, 726
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	71
BsiHKCI	CYCGRG	2 cut(s)	128, 387
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	3 cut(s)	128, 527, 584
BsmFI	GGGAC	1 cut(s)	789
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	2 cut(s)	128, 387
Bsp143I	GATC	1 cut(s)	68
Bsp68I	TCGCGA	1 cut(s)	726
BspACI	CCGC	5 cut(s)	179, 282, 348, 505, 659
BspANI	GGCC	1 cut(s)	20
BspFNI	CGCG	3 cut(s)	284, 348, 726
BspLI	GGNNCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	3 cut(s)	200, 485, 777
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	2 cut(s)	129, 644
BssMI	GATC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	644
Bst4CI	ACNGT	5 cut(s)	15, 224, 362, 471, 688
Bst6I	CTCTTC	3 cut(s)	39, 228, 238
BstC8I	GCNNGC	2 cut(s)	561, 728
BstDEI	CTNAG	1 cut(s)	805
BstF5I	GGATG	4 cut(s)	114, 244, 535, 677
BstFNI	CGCG	3 cut(s)	284, 348, 726
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	292, 348
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	3 cut(s)	128, 527, 584
BstMBI	GATC	1 cut(s)	68
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	727
BstSFI	CTRYAG	1 cut(s)	293
BstUI	CGCG	3 cut(s)	284, 348, 726
BstV1I	GCAGC	2 cut(s)	568, 742
BstV2I	GAAGAC	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	4 cut(s)	114, 244, 535, 677
BtsIMutI	CAGTG	2 cut(s)	39, 207
BtuMI	TCGCGA	1 cut(s)	726
Cac8I	GCNNGC	2 cut(s)	561, 728
CfoI	GCGC	2 cut(s)	292, 348
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	268, 384
Csp6I	GTAC	2 cut(s)	405, 472
CspCI	CAANNNNNGTGG	2 cut(s)	670, 705
CviAII	CATG	2 cut(s)	518, 793
CviJI	RGCY	9 cut(s)	20, 53, 351, 419, 559, 733, 743, 767, 797
CviKI_1	RGCY	9 cut(s)	20, 53, 351, 419, 559, 733, 743, 767, 797
CviQI	GTAC	2 cut(s)	405, 472
DdeI	CTNAG	1 cut(s)	805
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	3 cut(s)	39, 228, 238
EarI	CTCTTC	3 cut(s)	39, 228, 238
Eco130I	CCWWGG	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	268, 384
Eco47III	AGCGCT	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	252, 692
Eco88I	CYCGRG	2 cut(s)	128, 387
EcoT14I	CCWWGG	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	2 cut(s)	521, 796
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	2 cut(s)	517, 792
Fnu4HI	GCNGC	3 cut(s)	349, 557, 731
FokI	GGATG	4 cut(s)	121, 251, 542, 664
Fsp4HI	GCNGC	3 cut(s)	349, 557, 731
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	2 cut(s)	291, 347
GluI	GCNGC	3 cut(s)	349, 557, 731
GsuI	CTGGAG	2 cut(s)	183, 502
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	560
HhaI	GCGC	2 cut(s)	292, 348
Hin1II	CATG	2 cut(s)	521, 796
Hin6I	GCGC	2 cut(s)	290, 346
HinP1I	GCGC	2 cut(s)	290, 346
HinfI	GANTC	2 cut(s)	205, 751
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	511, 725
Hpy188I	TCNGA	2 cut(s)	210, 467
Hpy188III	TCNNGA	4 cut(s)	72, 92, 725, 755
Hpy99I	CGWCG	1 cut(s)	462
HpyCH4III	ACNGT	5 cut(s)	15, 224, 362, 471, 688
HpyCH4IV	ACGT	4 cut(s)	174, 460, 615, 812
HpyCH4V	TGCA	3 cut(s)	556, 671, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	727
HpyF3I	CTNAG	1 cut(s)	805
HpySE526I	ACGT	4 cut(s)	174, 460, 615, 812
Hsp92II	CATG	2 cut(s)	521, 796
HspAI	GCGC	2 cut(s)	290, 346
KroI	GCCGGC	1 cut(s)	559
KroNI	GCCGGC	1 cut(s)	561
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	213, 466, 573, 695, 719, 758, 781
Lsp1109I	GCAGC	2 cut(s)	568, 742
LweI	GCATC	4 cut(s)	184, 680, 686, 708
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	4 cut(s)	174, 460, 615, 812
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	8 cut(s)	49, 56, 245, 255, 616, 622, 662, 698
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	9 cut(s)	59, 75, 147, 213, 314, 322, 572, 620, 782
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	9 cut(s)	124, 229, 241, 424, 431, 477, 571, 580, 629
Mox20I	TGGCCA	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	5 cut(s)	62, 78, 137, 162, 539
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	1 cut(s)	560
MvnI	CGCG	3 cut(s)	284, 348, 726
MwoI	GCNNNNNNNGC	1 cut(s)	727
NaeI	GCCGGC	1 cut(s)	561
NdeII	GATC	1 cut(s)	68
NgoMIV	GCCGGC	1 cut(s)	559
NlaIII	CATG	2 cut(s)	521, 796
NlaIV	GGNNCC	1 cut(s)	386
NruI	TCGCGA	1 cut(s)	726
PdiI	GCCGGC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	751
PkrI	GCNGC	3 cut(s)	350, 558, 732
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	812
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	268, 384
PvuI	CGATCG	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	733
RruI	TCGCGA	1 cut(s)	726
RsaI	GTAC	2 cut(s)	406, 473
RsaNI	GTAC	2 cut(s)	405, 472
SaqAI	TTAA	5 cut(s)	62, 78, 137, 162, 539
SatI	GCNGC	3 cut(s)	349, 557, 731
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	2 cut(s)	268, 384
SchI	GAGTC	1 cut(s)	214
SetI	ASST	7 cut(s)	55, 177, 463, 618, 634, 735, 815
SfaNI	GCATC	4 cut(s)	184, 680, 686, 708
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	268, 384
Sse9I	AATT	9 cut(s)	59, 75, 147, 213, 314, 322, 572, 620, 782
SsiI	CCGC	5 cut(s)	179, 282, 348, 505, 659
SspMI	CTAG	1 cut(s)	740
StyI	CCWWGG	1 cut(s)	644
TaaI	ACNGT	5 cut(s)	15, 224, 362, 471, 688
TaiI	ACGT	4 cut(s)	177, 463, 618, 815
TaqI	TCGA	4 cut(s)	71, 91, 414, 429
TasI	AATT	9 cut(s)	59, 75, 147, 213, 314, 322, 572, 620, 782
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	5 cut(s)	62, 78, 137, 162, 539
Tru9I	TTAA	5 cut(s)	62, 78, 137, 162, 539
TscAI	CASTG	2 cut(s)	39, 207
TseI	GCWGC	2 cut(s)	556, 730
TspDTI	ATGAA	3 cut(s)	113, 617, 623
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	39, 207
VpaK11BI	GGWCC	2 cut(s)	268, 384
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	213
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.