Rh1CG163400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000491
Physical Location & Seq
Reverse (-)
36055775 .. 36063084
7310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG163400.1

Sequence Viewer

Length: 2355 bp
ATGGAGTTGGACACCACAAAATCTTTGAAGACCCAGGAATCAAGACGCCAAAAGATTAAAGCAAAGAAAGCAGAAATAAAGAAGTGGATGTCAAATAATGGTATCTCTGGAAATATGGAAACCAGAATCAAGAAGTACATCAAACAATCCAATGTCTTGGAAAAGAACATAAAGGCAGATGTGGATGTGACATATTTTCTCGACGGCAATCGTTTTGGCAATTCTAGTATCAGAGAGCCTCTGTTAGAGCATCTCGTACAGAATGCGGTAAAACAGGTACCGTTGATTCAGAAGATGCAGGATGCAAGCGGGTTAAAGACCTTGTGCAGATATATGAAGCCAGTTGTCTATAACAAAGACCACATTCTTGAAGTACAGGAGCTTGTTCAGATGATCTTCATCATACAAGGTGAAATTGACCAATATTGTACCGAAACCAGCAGCAATTTTAAGCGTCTAAGTAAAGGTGATTGTTATGGATTACAAATTCAAGATTGGGCAGCAAGGAACTATATGAGGTCTTATTATGACCCTCTTCCAACTTTCACCGGATGGGTCAGATGCCAAACAAGAGTAGAAGCCTTTGAACTCAAGGCCATGGACTTGATGCAAATTATTACCCAGCAGAACTCGAGCCAGTCGAAGATTGATTCTGAGCAGTTGAAAAAGTTGGCAGGCATTGAAGACAACACTGATCAGATACCAAACGAGGATGATCTACAATCAATTCCCCAGTGTGAACAGTTAGACCCTGACTGGGTGAAGCTCAGTTGTAGTGTTGTGTGGGACCCGGAAACTAAGAAGGGGCGAACAGGTTACGTTTGCAGGGATGCGCGAGGAGCTTTCTTGGGTGCTGAAAGTAGAGGTGGTTTAGAATTCAGGGACAGATTTTTGGCTGAAGCTGACAACATAAACAAAGCCATTGCATTTTTTACTAGGAATAAATTTAAAGGCGGGGGGCGGATTGTGGTGGAGTCTGATAACAAAGATCTCATTGAGTGCCTCTGTATGCCTAATTTGGAATCAAATGAAAGACTAACTGACGTCCTTCGACCCGTCCTGGAAGAAATTATCAAGTCGGCTTCAAAATTTAAATCTAAACGTTTTAAACATTGTAAGCGCCAAAGCAATGCAGCAGCTAATTGCATAGCAAGGCATGCCGTGGATTCTCCTAATCCTTCTTCTTGGATTCGCAATGCACCTGATTGGCTGCTAAATATCCTCAACCAAGATAGCTTGCATCTTCAGGAGAAACCACCGTCAGAGCAAAACCAAGAGCTGAGAGTAGACATTGAACCGGAGAAACCACCGTCAAAGAAAAACCAAGAGCTGAGAGTAGACACTGAACCTCCGGAACCACCATCAAAGAAAAACCAGGAGATGAGAGTAGACATTGAACCTCCGGAACCACCGTCAAAGAAAAACCAGGAGCTGAGAGTCGACATTGAACCTCCGGAGCCACTGTCAGAACAAAACCAGGAGCTGACAGTAGACATTGAACATTCGGATTCCGGATTCATGAATTGCCTAGGCAAAAAAGGACACATGGATGCTGATGTTGATGTGGATGTTCTATTCGCTAATCCTCCAAGTGATATCAAACAATCCAAAAAACGCCATCTCGGCTTGAATGCCCTAAAGAAAGTACCCATACTTCAAAAGATGCACGAATACGTGTTGGAAATCATCTGCAACCATCTCGAGCCAAAGGTGTACGAGAGGAATAGCTATATTGTTAGAGCGAGAGAACCACTTGGTTTGATGGTCTTCATTCTCCGAGGCACAATTGGAATGACTGACACGACTAGCAGCAATGCCACAACAACAGGTTCCTCGGAGATCACAGAGTCACGTGATGACAAGATCCTTAGGGAGGGGGATTTTTATGGAGAACAGCTTCTGAGCTGGGCATCTCCCAACAATATTTCTTCTTCTGATAATCCCGTCATCTCAGCTATAGATGTCAGATGTCAAACAAAAGTGGAAGCCTTGATTCTCAAGGCCGAGGACTTGAAAAGTGTAGCCTCCAAATGCGGATCGCAGTGGAATTTCGACAATTGTATGAATTCTCAGCAGTTGGTTGATGATGGCAGAGATCGTGTGGCTAATACAGCACCAACGTCCACTATTGAGGAGACTATCCGGCTTCATCAGGGTCATGACATAATTCTAGAGCAACTAGTTCTAATTAGAGAGACCATATTCCGGAGATTAGATGACCAGGGACGGAAATTAGATGATCAGGGCCGGAAATTATCTGATCAGGAACGGAAATTAGACAAGATGGCTGCATTTTTAGCCAGAGAGGGTTACACAGGGATTACAGGCGCATCTTCTACTCCTTCAGCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

784

Amino Acids

89.06

Weight (kDa)

6.0

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 261 - 387 8.2e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1047
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 277
AccI GTMKAC 5 cut(s) 1287, 1338, 1389, 1440, 1491
AccII CGCG 1 cut(s) 835
AccIII TCCGGA 5 cut(s) 1351, 1402, 1453, 1511, 2205
AciI CCGC 5 cut(s) 266, 309, 954, 961, 2034
AclI AACGTT 1 cut(s) 1102
AclWI GGATC 2 cut(s) 1858, 2044
AcsI RAATTY 6 cut(s) 486, 875, 944, 1088, 2047, 2065
AcuI CTGAAG 3 cut(s) 918, 1229, 2328
AcvI CACGTG 1 cut(s) 1853
AcyI GRCGYC 2 cut(s) 46, 1044
AfaI GTAC 7 cut(s) 137, 258, 279, 375, 430, 1647, 1715
AfiI CCNNNNNNNGG 3 cut(s) 757, 1873, 2205
AflIII ACRYGT 1 cut(s) 1674
AhlI ACTAGT 1 cut(s) 2179
AjnI CCWGG 6 cut(s) 33, 1059, 1374, 1425, 1476, 2220
Alw26I GTCTC 2 cut(s) 2129, 2189
AlwI GGATC 2 cut(s) 1858, 2044
AlwNI CAGNNNCTG 3 cut(s) 1432, 1483, 1900
Ama87I CYCGRG 2 cut(s) 631, 1700
Aor13HI TCCGGA 5 cut(s) 1351, 1402, 1453, 1511, 2205
AoxI GGCC 3 cut(s) 594, 2001, 2245
ApeKI GCWGC 7 cut(s) 441, 500, 1133, 1136, 1210, 1809, 2288
ApoI RAATTY 6 cut(s) 486, 875, 944, 1088, 2047, 2065
Asp700I GAANNNNTTC 1 cut(s) 1896
Asp718I GGTACC 1 cut(s) 277
AspA2I CCTAGG 1 cut(s) 1528
AspLEI GCGC 4 cut(s) 835, 1122, 2330, 2350
AspS9I GGNCC 2 cut(s) 787, 2245
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 4 cut(s) 422, 479, 538, 772
AvaI CYCGRG 2 cut(s) 631, 1700
AvaII GGWCC 1 cut(s) 787
AvrII CCTAGG 1 cut(s) 1528
AxyI CCTNAGG 1 cut(s) 1868
BanI GGYRCC 1 cut(s) 277
BarI GAAGNNNNNNTAC 2 cut(s) 1638, 1670
BbrPI CACGTG 1 cut(s) 1853
BbsI GAAGAC 3 cut(s) 35, 690, 1759
BbvI GCAGC 7 cut(s) 453, 512, 1145, 1148, 1197, 1821, 2275
BccI CCATC 7 cut(s) 546, 1369, 1626, 1704, 1756, 2081, 2278
BceAI ACGGC 2 cut(s) 220, 1145
BcgI CGANNNNNNTGC 2 cut(s) 1681, 1715
BciT130I CCWGG 6 cut(s) 35, 1061, 1376, 1427, 1478, 2222
BclI TGATCA 3 cut(s) 694, 2239, 2260
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 2 cut(s) 2129, 2189
BcuI ACTAGT 1 cut(s) 2179
BfaI CTAG 6 cut(s) 225, 936, 1529, 1806, 2171, 2180
BfmI CTRYAG 1 cut(s) 1956
BfoI RGCGCY 2 cut(s) 1123, 2351
BglI GCCNNNNNGGC 1 cut(s) 1623
BglII AGATCT 1 cut(s) 988
BisI GCNGC 7 cut(s) 442, 501, 1134, 1137, 1211, 1810, 2289
BlnI CCTAGG 1 cut(s) 1528
BlsI GCNGC 7 cut(s) 443, 502, 1135, 1138, 1212, 1811, 2290
Bme1390I CCNGG 7 cut(s) 35, 791, 1061, 1376, 1427, 1478, 2222
Bme18I GGWCC 1 cut(s) 787
BmeT110I CYCGRG 2 cut(s) 631, 1700
BmgT120I GGNCC 2 cut(s) 787, 2245
BmiI GGNNCC 7 cut(s) 279, 788, 789, 1356, 1407, 1458, 1831
BmrFI CCNGG 7 cut(s) 35, 791, 1061, 1376, 1427, 1478, 2222
BmrI ACTGGG 2 cut(s) 727, 766
BmuI ACTGGG 2 cut(s) 727, 766
BpiI GAAGAC 3 cut(s) 35, 690, 1759
BpuEI CTTGAG 2 cut(s) 575, 1982
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 2 cut(s) 1675, 1853
BsaBI GATNNNNATC 1 cut(s) 398
BsaHI GRCGYC 2 cut(s) 46, 1044
BsaI GGTCTC 1 cut(s) 2189
BsaJI CCNNGG 8 cut(s) 33, 597, 1161, 1528, 1777, 1833, 2004, 2221
BsaWI WCCGGW 7 cut(s) 548, 1297, 1351, 1402, 1453, 1511, 2205
BsaXI ACNNNNNCTCC 4 cut(s) 1333, 1363, 1448, 1478
Bsc4I CCNNNNNNNGG 3 cut(s) 757, 1873, 2205
Bse1I ACTGG 4 cut(s) 341, 637, 733, 761
Bse21I CCTNAGG 1 cut(s) 1868
Bse3DI GCAATG 4 cut(s) 921, 1135, 1201, 1819
Bse8I GATNNNNATC 1 cut(s) 398
BseAI TCCGGA 5 cut(s) 1351, 1402, 1453, 1511, 2205
BseBI CCWGG 6 cut(s) 35, 1061, 1376, 1427, 1478, 2222
BseDI CCNNGG 8 cut(s) 33, 597, 1161, 1528, 1777, 1833, 2004, 2221
BseGI GGATG 8 cut(s) 93, 190, 307, 557, 718, 835, 1555, 1573
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 757, 1873, 2205
BseMI GCAATG 4 cut(s) 921, 1135, 1201, 1819
BseMII CTCAG 8 cut(s) 645, 781, 1271, 1322, 1424, 1892, 1965, 2084
BseNI ACTGG 4 cut(s) 341, 637, 733, 761
BseRI GAGGAG 2 cut(s) 852, 2147
BseXI GCAGC 7 cut(s) 453, 512, 1145, 1148, 1197, 1821, 2275
BseYI CCCAGC 2 cut(s) 621, 1905
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 835
BshFI GGCC 3 cut(s) 596, 2003, 2247
BshNI GGYRCC 1 cut(s) 277
BsiHKCI CYCGRG 2 cut(s) 631, 1700
BslFI GGGAC 3 cut(s) 800, 896, 2238
BslI CCNNNNNNNGG 3 cut(s) 757, 1873, 2205
BsmAI GTCTC 2 cut(s) 2129, 2189
BsmFI GGGAC 3 cut(s) 800, 896, 2238
BsmI GAATGC 2 cut(s) 268, 1636
BsnI GGCC 3 cut(s) 596, 2003, 2247
Bso31I GGTCTC 1 cut(s) 2189
BsoBI CYCGRG 2 cut(s) 631, 1700
Bsp13I TCCGGA 5 cut(s) 1351, 1402, 1453, 1511, 2205
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 5 cut(s) 266, 309, 954, 961, 2034
BspANI GGCC 3 cut(s) 596, 2003, 2247
BspCNI CTCAG 8 cut(s) 646, 780, 1272, 1323, 1425, 1893, 1964, 2083
BspEI TCCGGA 5 cut(s) 1351, 1402, 1453, 1511, 2205
BspFNI CGCG 1 cut(s) 835
BspHI TCATGA 2 cut(s) 1518, 2158
BspLI GGNNCC 7 cut(s) 279, 788, 789, 1356, 1407, 1458, 1831
BspPI GGATC 2 cut(s) 1858, 2044
BspT107I GGYRCC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 2189
BsrDI GCAATG 4 cut(s) 921, 1135, 1201, 1819
BsrI ACTGG 4 cut(s) 341, 637, 733, 761
BssECI CCNNGG 8 cut(s) 33, 597, 1161, 1528, 1777, 1833, 2004, 2221
BssNI GRCGYC 2 cut(s) 46, 1044
BssT1I CCWWGG 2 cut(s) 597, 1528
Bst2UI CCWGG 6 cut(s) 35, 1061, 1376, 1427, 1478, 2222
Bst4CI ACNGT 7 cut(s) 282, 744, 1260, 1311, 1413, 1464, 1489
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 2 cut(s) 46, 1044
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstBAI YACGTR 2 cut(s) 1675, 1853
BstC8I GCNNGC 4 cut(s) 307, 676, 1158, 1238
BstDSI CCRYGG 2 cut(s) 597, 1161
BstENI CCTNNNNNAGG 1 cut(s) 1871
BstF5I GGATG 8 cut(s) 93, 190, 307, 557, 718, 835, 1555, 1573
BstFNI CGCG 1 cut(s) 835
BstH2I RGCGCY 2 cut(s) 1123, 2351
BstHHI GCGC 4 cut(s) 835, 1122, 2330, 2350
BstMAI GTCTC 2 cut(s) 2129, 2189
BstMWI GCNNNNNNNGC 6 cut(s) 68, 839, 1157, 1623, 2111, 2297
BstNI CCWGG 6 cut(s) 35, 1061, 1376, 1427, 1478, 2222
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 7 cut(s) 33, 789, 1059, 1374, 1425, 1476, 2220
BstSFI CTRYAG 1 cut(s) 1956
BstUI CGCG 1 cut(s) 835
BstV1I GCAGC 7 cut(s) 453, 512, 1145, 1148, 1197, 1821, 2275
BstV2I GAAGAC 3 cut(s) 35, 690, 1759
BstX2I RGATCY 2 cut(s) 988, 1863
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 2 cut(s) 988, 1863
Bsu36I CCTNAGG 1 cut(s) 1868
BsuRI GGCC 3 cut(s) 596, 2003, 2247
BtgI CCRYGG 2 cut(s) 597, 1161
BtsCI GGATG 8 cut(s) 93, 190, 307, 557, 718, 835, 1555, 1573
BtsI GCAGTG 1 cut(s) 2048
BtsIMutI CAGTG 5 cut(s) 690, 740, 1341, 1460, 2048
Cac8I GCNNGC 4 cut(s) 307, 676, 1158, 1238
CaiI CAGNNNCTG 3 cut(s) 1432, 1483, 1900
CciI TCATGA 2 cut(s) 1518, 2158
CfoI GCGC 4 cut(s) 835, 1122, 2330, 2350
Cfr13I GGNCC 2 cut(s) 787, 2245
CseI GACGC 2 cut(s) 54, 443
Csp6I GTAC 7 cut(s) 136, 257, 278, 374, 429, 1646, 1714
CspCI CAANNNNNGTGG 2 cut(s) 1740, 1775
CviAII CATG 5 cut(s) 598, 1157, 1519, 1546, 2159
CviQI GTAC 7 cut(s) 136, 257, 278, 374, 429, 1646, 1714
DraI TTTAAA 3 cut(s) 949, 1093, 1108
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 976
Eco130I CCWWGG 2 cut(s) 597, 1528
Eco31I GGTCTC 1 cut(s) 2189
Eco32I GATATC 1 cut(s) 1597
Eco47I GGWCC 1 cut(s) 787
Eco57I CTGAAG 3 cut(s) 918, 1229, 2328
Eco72I CACGTG 1 cut(s) 1853
Eco81I CCTNAGG 1 cut(s) 1868
Eco88I CYCGRG 2 cut(s) 631, 1700
EcoNI CCTNNNNNAGG 1 cut(s) 1871
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 2 cut(s) 875, 2065
EcoRII CCWGG 6 cut(s) 33, 1059, 1374, 1425, 1476, 2220
EcoRV GATATC 1 cut(s) 1597
EcoT14I CCWWGG 2 cut(s) 597, 1528
ErhI CCWWGG 2 cut(s) 597, 1528
FaeI CATG 5 cut(s) 601, 1160, 1522, 1549, 2162
FaqI GGGAC 3 cut(s) 800, 896, 2238
FatI CATG 5 cut(s) 597, 1156, 1518, 1545, 2158
FauI CCCGC 2 cut(s) 302, 947
FbaI TGATCA 3 cut(s) 694, 2239, 2260
FblI GTMKAC 5 cut(s) 1287, 1338, 1389, 1440, 1491
Fnu4HI GCNGC 7 cut(s) 442, 501, 1134, 1137, 1211, 1810, 2289
FokI GGATG 8 cut(s) 100, 197, 314, 564, 725, 842, 1562, 1580
Fsp4HI GCNGC 7 cut(s) 442, 501, 1134, 1137, 1211, 1810, 2289
FspBI CTAG 6 cut(s) 225, 936, 1529, 1806, 2171, 2180
GlaI GCGC 4 cut(s) 834, 1121, 2329, 2349
GluI GCNGC 7 cut(s) 442, 501, 1134, 1137, 1211, 1810, 2289
GsaI CCCAGC 2 cut(s) 625, 1909
HaeII RGCGCY 2 cut(s) 1123, 2351
HaeIII GGCC 3 cut(s) 596, 2003, 2247
HgaI GACGC 2 cut(s) 54, 443
HhaI GCGC 4 cut(s) 835, 1122, 2330, 2350
Hin1I GRCGYC 2 cut(s) 46, 1044
Hin1II CATG 5 cut(s) 601, 1160, 1522, 1549, 2162
Hin6I GCGC 4 cut(s) 833, 1120, 2328, 2348
HinP1I GCGC 4 cut(s) 833, 1120, 2328, 2348
HincII GTYRAC 1 cut(s) 1441
HindII GTYRAC 1 cut(s) 1441
HphI GGTGA 4 cut(s) 422, 479, 538, 772
Hpy166II GTNNAC 8 cut(s) 740, 1288, 1339, 1390, 1441, 1492, 1714, 2124
Hpy8I GTNNAC 8 cut(s) 740, 1288, 1339, 1390, 1441, 1492, 1714, 2124
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 796, 1058, 1188, 2352
HpyCH4III ACNGT 7 cut(s) 282, 744, 1260, 1311, 1413, 1464, 1489
HpyCH4IV ACGT 6 cut(s) 819, 1044, 1102, 1674, 1852, 2120
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 839, 1157, 1623, 2111, 2297
HpySE526I ACGT 6 cut(s) 819, 1044, 1102, 1674, 1852, 2120
Hsp92I GRCGYC 2 cut(s) 46, 1044
Hsp92II CATG 5 cut(s) 601, 1160, 1522, 1549, 2162
HspAI GCGC 4 cut(s) 833, 1120, 2328, 2348
KflI GGGWCCC 1 cut(s) 787
Kpn2I TCCGGA 5 cut(s) 1351, 1402, 1453, 1511, 2205
KpnI GGTACC 1 cut(s) 281
Ksp22I TGATCA 3 cut(s) 694, 2239, 2260
LmnI GCTCC 5 cut(s) 379, 839, 1429, 1456, 1480
Lsp1109I GCAGC 7 cut(s) 453, 512, 1145, 1148, 1197, 1821, 2275
MaeI CTAG 6 cut(s) 225, 936, 1529, 1806, 2171, 2180
MaeII ACGT 6 cut(s) 819, 1044, 1102, 1674, 1852, 2120
MaeIII GTNAC 4 cut(s) 187, 815, 1848, 2309
MfeI CAATTG 2 cut(s) 1785, 2056
MflI RGATCY 2 cut(s) 988, 1863
MlyI GAGTC 3 cut(s) 983, 1446, 1856
MmeI TCCRAC 2 cut(s) 563, 1659
MroI TCCGGA 5 cut(s) 1351, 1402, 1453, 1511, 2205
MroXI GAANNNNTTC 1 cut(s) 1896
MseI TTAA 6 cut(s) 57, 314, 450, 948, 1092, 1107
MslI CAYNNNNRTG 1 cut(s) 1548
MspR9I CCNGG 7 cut(s) 35, 791, 1061, 1376, 1427, 1478, 2222
MunI CAATTG 2 cut(s) 1785, 2056
Mva1269I GAATGC 2 cut(s) 268, 1636
MvaI CCWGG 6 cut(s) 35, 1061, 1376, 1427, 1478, 2222
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 6 cut(s) 68, 839, 1157, 1623, 2111, 2297
NciI CCSGG 1 cut(s) 791
NcoI CCATGG 1 cut(s) 597
NlaIII CATG 5 cut(s) 601, 1160, 1522, 1549, 2162
NlaIV GGNNCC 7 cut(s) 279, 788, 789, 1356, 1407, 1458, 1831
NmeAIII GCCGAG 2 cut(s) 1602, 2029
NmuCI GTSAC 2 cut(s) 187, 1848
NspI RCATGY 1 cut(s) 1160
PaeI GCATGC 1 cut(s) 1160
PaeR7I CTCGAG 2 cut(s) 631, 1700
PagI TCATGA 2 cut(s) 1518, 2158
PcsI WCGNNNNNNNCGW 1 cut(s) 638
PctI GAATGC 2 cut(s) 268, 1636
PdmI GAANNNNTTC 1 cut(s) 1896
PfoI TCCNGGA 1 cut(s) 1059
PkrI GCNGC 7 cut(s) 443, 502, 1135, 1138, 1212, 1811, 2290
PleI GAGTC 3 cut(s) 982, 1445, 1855
PmaCI CACGTG 1 cut(s) 1853
PmlI CACGTG 1 cut(s) 1853
PpsI GAGTC 3 cut(s) 982, 1445, 1855
Ppu21I YACGTR 2 cut(s) 1675, 1853
PpuMI RGGWCCY 1 cut(s) 787
Psp1406I AACGTT 1 cut(s) 1102
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 6 cut(s) 33, 1059, 1374, 1425, 1476, 2220
PspCI CACGTG 1 cut(s) 1853
PspFI CCCAGC 2 cut(s) 621, 1905
PspGI CCWGG 6 cut(s) 33, 1059, 1374, 1425, 1476, 2220
PspN4I GGNNCC 7 cut(s) 279, 788, 789, 1356, 1407, 1458, 1831
PspPI GGNCC 2 cut(s) 787, 2245
PspPPI RGGWCCY 1 cut(s) 787
PspXI VCTCGAGB 1 cut(s) 631
PstNI CAGNNNCTG 3 cut(s) 1432, 1483, 1900
PsuI RGATCY 2 cut(s) 988, 1863
RsaI GTAC 7 cut(s) 137, 258, 279, 375, 430, 1647, 1715
RsaNI GTAC 7 cut(s) 136, 257, 278, 374, 429, 1646, 1714
RseI CAYNNNNRTG 1 cut(s) 1548
SalI GTCGAC 1 cut(s) 1439
SaqAI TTAA 6 cut(s) 57, 314, 450, 948, 1092, 1107
SatI GCNGC 7 cut(s) 442, 501, 1134, 1137, 1211, 1810, 2289
Sau96I GGNCC 2 cut(s) 787, 2245
SchI GAGTC 3 cut(s) 983, 1446, 1856
ScrFI CCNGG 7 cut(s) 35, 791, 1061, 1376, 1427, 1478, 2222
SfcI CTRYAG 1 cut(s) 1956
Sfr274I CTCGAG 2 cut(s) 631, 1700
SinI GGWCC 1 cut(s) 787
SlaI CTCGAG 2 cut(s) 631, 1700
SmiI ATTTAAAT 1 cut(s) 1093
SmiMI CAYNNNNRTG 1 cut(s) 1548
SmlI CTYRAG 4 cut(s) 590, 631, 1700, 1997
SmoI CTYRAG 4 cut(s) 590, 631, 1700, 1997
SpeI ACTAGT 1 cut(s) 2179
SphI GCATGC 1 cut(s) 1160
SsiI CCGC 5 cut(s) 266, 309, 954, 961, 2034
SspI AATATT 2 cut(s) 425, 1924
SspMI CTAG 6 cut(s) 225, 936, 1529, 1806, 2171, 2180
StyD4I CCNGG 7 cut(s) 33, 789, 1059, 1374, 1425, 1476, 2220
StyI CCWWGG 2 cut(s) 597, 1528
SwaI ATTTAAAT 1 cut(s) 1093
TaaI ACNGT 7 cut(s) 282, 744, 1260, 1311, 1413, 1464, 1489
TaiI ACGT 6 cut(s) 822, 1047, 1105, 1677, 1855, 2123
TaqI TCGA 7 cut(s) 201, 632, 641, 1051, 1440, 1701, 2052
TatI WGTACW 2 cut(s) 135, 373
Tru1I TTAA 6 cut(s) 57, 314, 450, 948, 1092, 1107
Tru9I TTAA 6 cut(s) 57, 314, 450, 948, 1092, 1107
TscAI CASTG 5 cut(s) 697, 740, 1348, 1467, 2048
TseFI GTSAC 2 cut(s) 187, 1848
TseI GCWGC 7 cut(s) 441, 500, 1133, 1136, 1210, 1809, 2288
Tsp45I GTSAC 2 cut(s) 187, 1848
TspDTI ATGAA 8 cut(s) 350, 388, 1044, 1507, 1535, 1759, 2078, 2138
TspGWI ACGGA 2 cut(s) 2242, 2284
TspRI CASTG 5 cut(s) 697, 740, 1348, 1467, 2048
VpaK11BI GGWCC 1 cut(s) 787
XagI CCTNNNNNAGG 1 cut(s) 1871
XapI RAATTY 6 cut(s) 486, 875, 944, 1088, 2047, 2065
XbaI TCTAGA 1 cut(s) 2170
XceI RCATGY 1 cut(s) 1160
XhoI CTCGAG 2 cut(s) 631, 1700
XmaJI CCTAGG 1 cut(s) 1528
XmiI GTMKAC 5 cut(s) 1287, 1338, 1389, 1440, 1491
XmnI GAANNNNTTC 1 cut(s) 1896
XspI CTAG 6 cut(s) 225, 936, 1529, 1806, 2171, 2180
ZraI GACGTC 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.