Rmu_co8231441.1_g000001

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8231441.1
OG0000491
Physical Location & Seq
Forward (+)
17 .. 463
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8231441.1_g000001.1.cds

Sequence Viewer

Length: 447 bp
atgcttcaagctctgggtgacaccaagttgataagcttgagccaaaaaatgaagccagtggttcgcatctccaatacggccactagtcactttgttaaacagggggacccgctagatcagatgctcttcattataggaggccatattcaagtcaacggtataggacaggtcgcgatgagtttctatggaacagaaattctagagtgggtgtcatttaacacggggagatcttatcgtgatcctcttccttgctcgaccgaacttgtcgaaccatatagaggcaaattagaagcgcttgccctcaacgcttgggaattgttacattttctggaggacgatcaatttgacattaataatcatccggaagcgaagaagttggcagattcgtatcaaaaaaagaagttaacagatgcatgcgacaaaaataattatcatgaagaggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

148

Amino Acids

16.77

Weight (kDa)

5.48

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000491)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12100 FvH4_3g12110 FvH4_3g12111 FvH4_3g12120 FvH4_3g12120 FvH4_3g28952 FvH4_6g40660 FvH4_6g40661 FvH4_6g40960
rosa_chinensis RchiOBHm_Chr1g0340941 RchiOBHm_Chr2g0156041 RchiOBHm_Chr2g0156591 RchiOBHm_Chr5g0019791 RchiOBHm_Chr5g0019821
rosa_laevigata RLG00000007998 RLG00000020883 RLG00000020887 RLG00000020922 RLG00000029052 RLG00000032473 RLG00000032474 RLG00000032477 RLG00000032478
rosa_multiflora Rmu_co8231441.1_g000001 Rmu_co8352639.1_g000001 Rmu_co8510723.1_g000001 Rmu_sc0000344.1_g000022 Rmu_sc0000344.1_g000023 Rmu_sc0001145.1_g000015 Rmu_sc0001145.1_g000016 Rmu_sc0001211.1_g000087 Rmu_sc0001319.1_g000003 Rmu_sc0008321.1_g000001 Rmu_sc0011512.1_g000007 Rmu_sc0011922.1_g000003 Rmu_sc0011922.1_g000007 Rmu_ssc0000155.1_g000002 Rmu_ssc0000155.1_g000004
rosa_roxburghii Rroxscaffold_1G00058320 Rroxscaffold_1G00058340 Rroxscaffold_2G00092930 Rroxscaffold_2G00093240 Rroxscaffold_2G00093270 Rroxscaffold_4G00311560 Rroxscaffold_4G00311590 Rroxscaffold_5G00360130
rosa_rugosa Rorug01G0160700.1 Rorug02G0451400 Rorug02G0454400 Rorug02G0454400 Rorug02G0454500 Rorug02G0454600 Rorug05G0054100 Rorug05G0054200 Rorug05G0054300
rosa_samantha Rh1AG175400 Rh1BG143700 Rh1BG143800 Rh1CG163400 Rh1DG175300 Rh1DG175400 Rh1DG175500 Rh2AG518200 Rh2AG518300 Rh2BG529400 Rh2BG532700 Rh2BG533200 Rh2CG502900 Rh2CG503000 Rh2DG538500 Rh2DG538600 Rh2DG541600 Rh2DG542000 Rh4BG200000 Rh4BG200100 Rh5AG144500 Rh5AG144600 Rh5AG366400 Rh5BG143500 Rh5BG143700 Rh5CG155000 Rh5CG155300 Rh5DG143500 Rh7BG257300 Rh7BG257400 Rh7BG257500
rosa_wichuraiana Rw1G014680 Rw2G042670 Rw2G042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 195
AfeI AGCGCT 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 8, 149
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 2 cut(s) 11, 36
AluI AGCT 2 cut(s) 11, 36
AlwI GGATC 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 361
Aor51HI AGCGCT 1 cut(s) 294
AoxI GGCC 2 cut(s) 78, 139
ApoI RAATTY 1 cut(s) 195
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AseI ATTAAT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 93
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 84, 113, 200
BfoI RGCGCY 1 cut(s) 296
BglII AGATCT 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 107, 108
BmsI GCATC 3 cut(s) 75, 111, 400
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 387
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 387
BseAI TCCGGA 1 cut(s) 361
BseGI GGATG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 80, 141
BsiEI CGRYCG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 80, 141
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 4 cut(s) 115, 227, 238, 337
Bsp68I TCGCGA 1 cut(s) 173
BspACI CCGC 1 cut(s) 110
BspANI GGCC 2 cut(s) 80, 141
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 107, 108
BspPI GGATC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 56
BssMI GATC 4 cut(s) 115, 227, 238, 337
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 3 cut(s) 131, 249, 432
BstC8I GCNNGC 2 cut(s) 297, 415
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 173
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 4 cut(s) 118, 230, 241, 340
BstMBI GATC 4 cut(s) 115, 227, 238, 337
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 417
BstUI CGCG 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 2 cut(s) 80, 141
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 297, 415
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 2 cut(s) 414, 434
CviJI RGCY 6 cut(s) 11, 36, 42, 55, 80, 141
CviKI_1 RGCY 6 cut(s) 11, 36, 42, 55, 80, 141
DpnI GATC 4 cut(s) 117, 229, 240, 339
DpnII GATC 4 cut(s) 115, 227, 238, 337
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 131, 249, 432
EarI CTCTTC 3 cut(s) 131, 249, 432
Eco47I GGWCC 1 cut(s) 106
Eco47III AGCGCT 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 415
FaeI CATG 2 cut(s) 417, 437
FaiI YATR 8 cut(s) 134, 144, 161, 186, 274, 276, 415, 435
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 413, 433
FauI CCCGC 1 cut(s) 117
FokI GGATG 1 cut(s) 345
FspBI CTAG 3 cut(s) 84, 113, 200
GlaI GCGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 2 cut(s) 80, 141
HapII CCGG 1 cut(s) 362
HhaI GCGC 1 cut(s) 295
Hin1II CATG 2 cut(s) 417, 437
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 2 cut(s) 154, 405
HindII GTYRAC 2 cut(s) 154, 405
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 383
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 2 cut(s) 154, 405
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 6 cut(s) 172, 200, 236, 329, 362, 434
Hpy8I GTNNAC 2 cut(s) 154, 405
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 2 cut(s) 417, 437
HspAI GCGC 1 cut(s) 293
KflI GGGWCCC 1 cut(s) 106
Kpn2I TCCGGA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 405
Kzo9I GATC 4 cut(s) 115, 227, 238, 337
LguI GCTCTTC 1 cut(s) 131
LpnPI CCDG 5 cut(s) 69, 86, 152, 314, 375
LweI GCATC 3 cut(s) 75, 111, 400
MaeI CTAG 3 cut(s) 84, 113, 200
MaeIII GTNAC 3 cut(s) 17, 86, 318
MalI GATC 4 cut(s) 117, 229, 240, 339
MboI GATC 4 cut(s) 115, 227, 238, 337
MboII GAAGA 3 cut(s) 118, 236, 382
MflI RGATCY 1 cut(s) 227
MluCI AATT 5 cut(s) 195, 284, 314, 341, 427
MnlI CCTC 6 cut(s) 131, 252, 272, 311, 325, 433
Mph1103I ATGCAT 1 cut(s) 415
MroI TCCGGA 1 cut(s) 361
MseI TTAA 5 cut(s) 96, 216, 351, 404, 445
MspI CCGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 4 cut(s) 115, 227, 238, 337
NlaIII CATG 2 cut(s) 417, 437
NlaIV GGNNCC 2 cut(s) 107, 108
NmuCI GTSAC 2 cut(s) 17, 86
NruI TCGCGA 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 1 cut(s) 417
PaeI GCATGC 1 cut(s) 417
PagI TCATGA 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 106
PshBI ATTAAT 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 107, 108
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 1 cut(s) 227
RruI TCGCGA 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 5 cut(s) 96, 216, 351, 404, 445
Sau3AI GATC 4 cut(s) 115, 227, 238, 337
Sau96I GGNCC 1 cut(s) 106
SetI ASST 4 cut(s) 13, 38, 171, 444
SfaNI GCATC 3 cut(s) 75, 111, 400
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 417
Sse9I AATT 5 cut(s) 195, 284, 314, 341, 427
SsiI CCGC 1 cut(s) 110
SspMI CTAG 3 cut(s) 84, 113, 200
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 254, 267
TaqII GACCGA 1 cut(s) 272
TasI AATT 5 cut(s) 195, 284, 314, 341, 427
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 5 cut(s) 96, 216, 351, 404, 445
Tru9I TTAA 5 cut(s) 96, 216, 351, 404, 445
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 2 cut(s) 17, 86
Tsp45I GTSAC 2 cut(s) 17, 86
TspDTI ATGAA 2 cut(s) 65, 118
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 106
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 1 cut(s) 195
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 1 cut(s) 417
XspI CTAG 3 cut(s) 84, 113, 200
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.